Wall clock time and date at job start Tue Mar 31 2020 08:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47396 * 2 1 4 4 C 1.52991 * 109.47111 * 120.00525 * 2 1 3 5 5 H 1.09004 * 109.47272 * 306.51644 * 4 2 1 6 6 C 1.50698 * 109.47781 * 66.51697 * 4 2 1 7 7 O 1.21278 * 120.00062 * 111.37652 * 6 4 2 8 8 N 1.34776 * 119.99657 * 291.38010 * 6 4 2 9 9 C 1.46507 * 119.99685 * 175.62384 * 8 6 4 10 10 C 1.52998 * 109.46863 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.47306 * 299.99751 * 10 9 8 12 12 C 1.52997 * 109.47316 * 60.00195 * 10 9 8 13 13 C 1.50705 * 109.46907 * 180.02562 * 10 9 8 14 14 H 1.08001 * 120.00115 * 2.63835 * 13 10 9 15 15 C 1.37878 * 120.00039 * 182.63604 * 13 10 9 16 16 N 1.31514 * 120.00341 * 190.38651 * 15 13 10 17 17 Si 1.86802 * 120.00004 * 10.39184 * 15 13 10 18 18 H 1.48496 * 109.47367 * 91.60506 * 17 15 13 19 19 H 1.48495 * 109.47233 * 211.61320 * 17 15 13 20 20 H 1.48511 * 109.46771 * 331.60667 * 17 15 13 21 21 C 1.50702 * 109.47306 * 186.52093 * 4 2 1 22 22 C 1.38234 * 120.00480 * 119.99383 * 21 4 2 23 23 C 1.38227 * 120.00169 * 180.02562 * 22 21 4 24 24 C 1.38246 * 120.00169 * 359.95830 * 23 22 21 25 25 C 1.38231 * 119.99465 * 359.97438 * 24 23 22 26 26 C 1.38236 * 119.99591 * 299.97697 * 21 4 2 27 27 H 1.09004 * 109.46772 * 300.83346 * 1 2 3 28 28 H 1.08999 * 109.47634 * 60.82705 * 1 2 3 29 29 H 1.09002 * 109.47479 * 180.83132 * 1 2 3 30 30 H 1.09008 * 109.46707 * 240.00116 * 2 1 3 31 31 H 1.09003 * 109.46952 * 300.00403 * 3 2 1 32 32 H 1.08998 * 109.47165 * 60.00252 * 3 2 1 33 33 H 1.08996 * 109.47246 * 180.02562 * 3 2 1 34 34 H 0.97002 * 120.00458 * 355.62535 * 8 6 4 35 35 H 1.09003 * 109.47138 * 299.99888 * 9 8 6 36 36 H 1.09001 * 109.46840 * 60.00009 * 9 8 6 37 37 H 1.09005 * 109.46914 * 70.80545 * 11 10 9 38 38 H 1.08998 * 109.47223 * 190.80522 * 11 10 9 39 39 H 1.08996 * 109.47424 * 310.80642 * 11 10 9 40 40 H 1.09003 * 109.47294 * 59.99770 * 12 10 9 41 41 H 1.08997 * 109.47369 * 179.97438 * 12 10 9 42 42 H 1.09000 * 109.47262 * 299.99459 * 12 10 9 43 43 H 0.96996 * 120.00364 * 180.02562 * 16 15 13 44 44 H 1.07999 * 119.99644 * 359.97438 * 22 21 4 45 45 H 1.08003 * 120.00595 * 179.97438 * 23 22 21 46 46 H 1.07995 * 119.99730 * 179.72207 * 24 23 22 47 47 H 1.08007 * 120.00058 * 179.97438 * 25 24 23 48 48 H 1.08004 * 120.00225 * 359.97438 * 26 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.5845 -0.2793 2.1353 6 6 1.6737 -2.1810 1.1711 7 8 2.5403 -3.0167 1.0245 8 7 0.3831 -2.5578 1.2643 9 6 0.0169 -3.9660 1.0928 10 6 -1.4976 -4.1212 1.2452 11 6 -1.9210 -3.6502 2.6379 12 6 -2.2061 -3.2771 0.1839 13 6 -1.8742 -5.5698 1.0693 14 1 -1.1059 -6.3122 0.9114 15 6 -3.1996 -5.9474 1.1101 16 7 -3.5190 -7.2221 1.1624 17 14 -4.5419 -4.6483 1.0910 18 1 -4.9535 -4.3825 -0.3108 19 1 -5.7113 -5.1334 1.8669 20 1 -4.0275 -3.3962 1.7018 21 6 3.5383 -0.5831 1.3325 22 6 4.1158 0.0339 2.4264 23 6 5.4901 0.1611 2.5025 24 6 6.2872 -0.3296 1.4852 25 6 5.7098 -0.9479 0.3920 26 6 4.3353 -1.0739 0.3152 27 1 -0.3633 0.5268 0.8825 28 1 -0.3634 0.5009 -0.8973 29 1 -0.3634 -1.0275 0.0149 30 1 1.8933 -0.5139 -0.8901 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 3.1300 1.4424 -0.0005 34 1 -0.3034 -1.8967 1.4450 35 1 0.3181 -4.3015 0.1004 36 1 0.5220 -4.5674 1.8486 37 1 -1.8266 -2.5660 2.6990 38 1 -2.9575 -3.9353 2.8183 39 1 -1.2808 -4.1135 3.3885 40 1 -1.9045 -3.6127 -0.8083 41 1 -3.2850 -3.3881 0.2921 42 1 -1.9338 -2.2294 0.3115 43 1 -4.4515 -7.4877 1.1907 44 1 3.4931 0.4174 3.2211 45 1 5.9414 0.6436 3.3570 46 1 7.3606 -0.2262 1.5426 47 1 6.3324 -1.3310 -0.4031 48 1 3.8842 -1.5566 -0.5392 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457996577.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:44:06 Heat of formation + Delta-G solvation = -27.060196 kcal Electronic energy + Delta-G solvation = -25789.293210 eV Core-core repulsion = 22422.570785 eV Total energy + Delta-G solvation = -3366.722425 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 5.16 seconds Orbital eigenvalues (eV) -41.61703 -39.79861 -38.36278 -36.98546 -34.97253 -33.40164 -32.30080 -31.69332 -29.06529 -28.09383 -27.73603 -27.22430 -26.54042 -23.58235 -22.79408 -21.89813 -21.08759 -20.56988 -18.42091 -18.00311 -17.80044 -17.01634 -16.73983 -16.49273 -15.97073 -15.64230 -15.42394 -15.14068 -14.92124 -14.67884 -14.52077 -14.23083 -14.16860 -13.89278 -13.78545 -13.57301 -13.41056 -13.21565 -12.96018 -12.88528 -12.40490 -12.38734 -12.16723 -12.00993 -11.93344 -11.88126 -11.75608 -11.60201 -11.50875 -11.06096 -10.73126 -10.65333 -10.33059 -9.94029 -9.72097 -9.54683 -8.29450 -6.33366 0.48161 0.58923 1.37148 1.38031 1.50889 1.68077 2.31357 2.35230 2.98805 3.07155 3.57276 3.72879 3.93170 4.04218 4.13183 4.18908 4.22760 4.31407 4.32143 4.37926 4.42347 4.47865 4.66569 4.70923 4.77227 4.79721 4.84201 4.85221 4.87160 4.94038 5.01112 5.04963 5.08155 5.15547 5.20106 5.21913 5.26827 5.40645 5.43346 5.48702 5.54111 5.62240 5.68248 5.72470 5.77039 5.78800 6.17824 6.29682 6.64559 6.72757 7.31713 7.33483 8.87952 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.025064 B = 0.003623 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.878122 B = 7725.673266 C = 8282.119377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.076 4.076 3 C -0.137 4.137 4 C -0.057 4.057 5 H 0.126 0.874 6 C 0.509 3.491 7 O -0.581 6.581 8 N -0.710 5.710 9 C 0.156 3.844 10 C 0.028 3.972 11 C -0.140 4.140 12 C -0.148 4.148 13 C -0.516 4.516 14 H 0.024 0.976 15 C 0.013 3.987 16 N -0.951 5.951 17 Si 0.943 3.057 18 H -0.284 1.284 19 H -0.314 1.314 20 H -0.193 1.193 21 C -0.072 4.072 22 C -0.121 4.121 23 C -0.128 4.128 24 C -0.128 4.128 25 C -0.138 4.138 26 C -0.103 4.103 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.049 0.951 34 H 0.412 0.588 35 H 0.040 0.960 36 H 0.036 0.964 37 H 0.067 0.933 38 H 0.045 0.955 39 H 0.039 0.961 40 H 0.045 0.955 41 H 0.038 0.962 42 H 0.076 0.924 43 H 0.264 0.736 44 H 0.141 0.859 45 H 0.146 0.854 46 H 0.141 0.859 47 H 0.128 0.872 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.985 24.487 1.027 27.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.095 4.095 3 C -0.194 4.194 4 C -0.078 4.078 5 H 0.143 0.857 6 C 0.297 3.703 7 O -0.461 6.461 8 N -0.364 5.364 9 C 0.032 3.968 10 C 0.027 3.973 11 C -0.198 4.198 12 C -0.205 4.205 13 C -0.555 4.555 14 H 0.042 0.958 15 C -0.184 4.184 16 N -0.590 5.590 17 Si 0.771 3.229 18 H -0.211 1.211 19 H -0.244 1.244 20 H -0.117 1.117 21 C -0.073 4.073 22 C -0.139 4.139 23 C -0.146 4.146 24 C -0.145 4.145 25 C -0.156 4.156 26 C -0.121 4.121 27 H 0.100 0.900 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.252 0.748 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.056 0.944 42 H 0.094 0.906 43 H 0.073 0.927 44 H 0.159 0.841 45 H 0.163 0.837 46 H 0.159 0.841 47 H 0.146 0.854 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 12.461 23.764 0.921 26.849 hybrid contribution -0.985 -0.865 -0.322 1.350 sum 11.476 22.899 0.599 25.621 Atomic orbital electron populations 1.22280 0.93737 1.02699 1.04150 1.20999 0.96702 0.97079 0.94733 1.21772 1.00850 0.93731 1.03021 1.20493 0.93702 0.90771 1.02858 0.85656 1.21116 0.82062 0.91824 0.75340 1.90687 1.49539 1.55107 1.50767 1.46378 1.08300 1.09942 1.71795 1.21023 0.95575 0.81161 0.99058 1.18646 0.90989 0.93895 0.93776 1.22222 1.00715 0.99809 0.97026 1.22369 0.99138 0.99592 0.99395 1.21058 0.92525 0.92361 1.49516 0.95773 1.25924 1.01409 0.97283 0.93768 1.70102 1.18704 1.18231 1.51985 0.86387 0.76676 0.81718 0.78093 1.21105 1.24379 1.11669 1.19391 0.93598 0.98992 0.95313 1.21297 0.95861 0.99452 0.97261 1.21419 0.93502 1.00193 0.99471 1.21435 1.00948 0.98218 0.93933 1.21343 0.94612 1.00139 0.99497 1.20964 0.94325 0.98067 0.98728 0.89990 0.90854 0.92612 0.92460 0.91552 0.90972 0.93160 0.74751 0.94187 0.94553 0.91432 0.93584 0.94146 0.93580 0.94393 0.90564 0.92713 0.84106 0.83657 0.84100 0.85361 0.88173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 8.40 71.98 0.60 -2.12 16 2 C -0.08 -1.39 2.23 -10.80 -0.02 -1.42 16 3 C -0.14 -1.94 8.85 71.98 0.64 -1.31 16 4 C -0.06 -1.24 2.02 -12.29 -0.02 -1.27 16 5 H 0.13 2.05 7.87 -2.39 -0.02 2.03 16 6 C 0.51 15.89 6.89 87.66 0.60 16.49 16 7 O -0.58 -23.63 14.82 -3.02 -0.04 -23.67 16 8 N -0.71 -21.56 3.81 -463.05 -1.76 -23.33 16 9 C 0.16 6.27 4.48 86.38 0.39 6.66 16 10 C 0.03 1.18 0.50 -52.93 -0.03 1.15 16 11 C -0.14 -5.22 7.44 71.98 0.54 -4.68 16 12 C -0.15 -5.40 7.48 71.98 0.54 -4.86 16 13 C -0.52 -28.64 8.62 25.60 0.22 -28.42 16 14 H 0.02 1.53 7.99 -2.91 -0.02 1.51 16 15 C 0.01 0.74 5.36 84.65 0.45 1.19 16 16 N -0.95 -59.42 13.96 21.45 0.30 -59.12 16 17 Si 0.94 42.08 22.82 68.60 1.57 43.65 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 19 H -0.31 -14.52 7.11 99.48 0.71 -13.81 16 20 H -0.19 -7.10 4.43 99.48 0.44 -6.66 16 21 C -0.07 -1.70 2.95 -19.87 -0.06 -1.76 16 22 C -0.12 -2.36 9.67 22.27 0.22 -2.14 16 23 C -0.13 -2.28 10.05 22.27 0.22 -2.05 16 24 C -0.13 -2.41 10.05 22.27 0.22 -2.18 16 25 C -0.14 -3.12 10.05 22.27 0.22 -2.89 16 26 C -0.10 -2.69 7.81 22.27 0.17 -2.52 16 27 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 1.10 3.81 -2.39 -0.01 1.09 16 30 H 0.06 1.27 7.63 -2.38 -0.02 1.25 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.05 0.83 6.95 -2.39 -0.02 0.81 16 34 H 0.41 9.95 4.24 -92.71 -0.39 9.56 16 35 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.07 1.90 7.16 -2.38 -0.02 1.88 16 38 H 0.05 1.80 4.32 -2.39 -0.01 1.79 16 39 H 0.04 1.54 8.10 -2.39 -0.02 1.52 16 40 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.04 1.43 2.24 -2.39 -0.01 1.43 16 42 H 0.08 2.08 5.59 -2.39 -0.01 2.07 16 43 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 44 H 0.14 2.03 7.95 -2.91 -0.02 2.01 16 45 H 0.15 1.75 8.06 -2.91 -0.02 1.72 16 46 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 47 H 0.13 2.48 8.06 -2.91 -0.02 2.45 16 48 H 0.10 2.92 7.40 -2.91 -0.02 2.89 16 Total: -1.00 -72.84 357.63 5.25 -67.59 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: 0.29 Total: 27.02 kcal Atomic # 6 Polarization: -37.04 SS G_CDS: 4.91 Total: -32.13 kcal Atomic # 7 Polarization: -80.98 SS G_CDS: -1.47 Total: -82.45 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.04 Total: -23.67 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 1.57 Total: 43.65 kcal Total: -72.84 5.25 -67.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457996577.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.527 kcal (2) G-P(sol) polarization free energy of solvation -72.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.16 seconds