Wall clock time and date at job start Tue Mar 31 2020 09:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47133 * 2 1 4 4 C 1.50693 * 109.47432 * 239.99867 * 2 1 3 5 5 H 1.08008 * 119.99840 * 237.61247 * 4 2 1 6 6 C 1.37870 * 120.00101 * 57.60737 * 4 2 1 7 7 N 1.31513 * 120.00408 * 6.35028 * 6 4 2 8 8 Si 1.86801 * 120.00169 * 186.34782 * 6 4 2 9 9 H 1.48501 * 109.47016 * 84.97536 * 8 6 4 10 10 H 1.48497 * 109.47587 * 204.97421 * 8 6 4 11 11 H 1.48497 * 109.47276 * 324.97956 * 8 6 4 12 12 C 1.53002 * 109.46915 * 119.99391 * 2 1 3 13 13 N 1.46897 * 109.47649 * 300.00627 * 12 2 1 14 14 C 1.46894 * 111.00152 * 179.97438 * 13 12 2 15 15 C 1.50705 * 109.47169 * 179.97438 * 14 13 12 16 16 C 1.38270 * 119.93904 * 90.00055 * 15 14 13 17 17 C 1.38149 * 120.05291 * 180.27417 * 16 15 14 18 18 C 1.38735 * 119.94228 * 359.45492 * 17 16 15 19 19 O 1.35899 * 120.05697 * 180.24973 * 18 17 16 20 20 C 1.42906 * 116.99660 * 0.27389 * 19 18 17 21 21 C 1.52997 * 109.46765 * 179.97438 * 20 19 18 22 22 C 1.52996 * 117.49837 * 243.74511 * 21 20 19 23 23 C 1.53000 * 117.49761 * 175.08632 * 21 20 19 24 24 C 1.38734 * 119.88925 * 0.52427 * 18 17 16 25 25 C 1.38149 * 119.94122 * 359.74524 * 24 18 17 26 26 H 1.08999 * 109.47342 * 305.10802 * 1 2 3 27 27 H 1.09000 * 109.47133 * 65.11392 * 1 2 3 28 28 H 1.08999 * 109.46985 * 185.10661 * 1 2 3 29 29 H 1.08999 * 109.46979 * 179.97438 * 3 2 1 30 30 H 1.08993 * 109.46852 * 300.00107 * 3 2 1 31 31 H 1.09003 * 109.46682 * 59.99611 * 3 2 1 32 32 H 0.96999 * 120.00658 * 180.02562 * 7 6 4 33 33 H 1.09006 * 109.47219 * 179.97438 * 12 2 1 34 34 H 1.09002 * 109.46891 * 60.00867 * 12 2 1 35 35 H 1.00902 * 111.00070 * 56.04548 * 13 12 2 36 36 H 1.09006 * 109.47303 * 59.99766 * 14 13 12 37 37 H 1.08998 * 109.47307 * 300.00005 * 14 13 12 38 38 H 1.07997 * 119.97639 * 359.97438 * 16 15 14 39 39 H 1.08001 * 120.02668 * 179.70229 * 17 16 15 40 40 H 1.09000 * 109.46942 * 299.99389 * 20 19 18 41 41 H 1.08994 * 109.47257 * 59.99853 * 20 19 18 42 42 H 1.08998 * 115.55292 * 29.41969 * 21 20 19 43 43 H 1.09002 * 117.49972 * 359.97438 * 22 21 20 44 44 H 1.09000 * 117.50280 * 145.02066 * 22 21 20 45 45 H 1.09002 * 117.50005 * 214.98018 * 23 21 20 46 46 H 1.09004 * 117.50080 * 359.97438 * 23 21 20 47 47 H 1.08000 * 120.03162 * 179.77422 * 24 18 17 48 48 H 1.07999 * 119.96790 * 179.97438 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6848 -1.5655 -1.1317 6 6 1.6591 -0.2689 -2.4820 7 7 0.9687 0.8433 -2.6082 8 14 2.1341 -1.2504 -3.9987 9 1 1.1294 -2.3188 -4.2316 10 1 2.1801 -0.3487 -5.1777 11 1 3.4705 -1.8642 -3.7927 12 6 2.0399 -0.7211 1.2493 13 7 1.5502 -0.0287 2.4487 14 6 2.0207 -0.6951 3.6704 15 6 1.5000 0.0423 4.8772 16 6 0.2828 -0.3113 5.4297 17 6 -0.1994 0.3668 6.5326 18 6 0.5440 1.3957 7.0925 19 8 0.0742 2.0609 8.1804 20 6 -1.1903 1.6440 8.6996 21 6 -1.5505 2.5017 9.9143 22 6 -1.6685 1.7965 11.2670 23 6 -2.9270 2.2875 10.5471 24 6 1.7652 1.7481 6.5364 25 6 2.2403 1.0706 5.4302 26 1 -0.3634 0.5910 0.8407 27 1 -0.3633 0.4325 -0.9322 28 1 -0.3633 -1.0236 0.0915 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 0.7058 1.1538 -3.4888 33 1 3.1300 -0.7216 1.2492 34 1 1.6767 -1.7488 1.2493 35 1 0.5436 0.0413 2.4402 36 1 3.1106 -0.6953 3.6874 37 1 1.6569 -1.7224 3.6870 38 1 -0.2937 -1.1149 4.9960 39 1 -1.1524 0.0935 6.9609 40 1 -1.9549 1.7617 7.9317 41 1 -1.1332 0.5974 8.9983 42 1 -1.1516 3.5160 9.9086 43 1 -1.4899 0.7215 11.2914 44 1 -1.3475 2.3470 12.1513 45 1 -3.4334 3.1609 10.9580 46 1 -3.5761 1.5359 10.0977 47 1 2.3441 2.5511 6.9682 48 1 3.1907 1.3449 4.9967 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459731223.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:22:40 Heat of formation + Delta-G solvation = 3.099234 kcal Electronic energy + Delta-G solvation = -23869.180401 eV Core-core repulsion = 20503.765788 eV Total energy + Delta-G solvation = -3365.414614 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.27517 -38.40081 -37.21420 -36.49802 -33.91009 -31.39882 -31.03594 -29.70505 -27.85747 -25.53902 -25.28747 -25.05704 -23.06849 -22.88502 -22.80054 -21.08748 -20.76836 -18.43713 -18.32595 -16.72458 -16.09708 -15.97485 -15.46582 -15.40412 -14.82844 -14.56546 -14.44619 -14.14079 -13.98304 -13.41136 -13.14625 -12.97428 -12.85235 -12.40753 -12.10811 -12.00362 -11.87103 -11.71091 -11.33190 -11.23668 -11.04133 -11.00388 -10.93149 -10.76084 -10.61415 -10.54163 -10.35813 -10.17436 -10.01237 -9.36379 -9.06430 -8.96617 -8.62453 -8.26240 -8.11409 -7.64639 -5.89402 -3.99372 1.37831 1.43674 2.85983 3.32703 3.37308 3.39417 3.41910 3.76855 4.28450 4.40227 4.45909 4.54128 4.73457 4.77817 4.88582 4.94068 5.00823 5.14358 5.17551 5.19704 5.35275 5.37505 5.41789 5.43359 5.59592 5.63336 5.75846 5.77741 5.92935 6.08421 6.27495 6.32324 6.38411 6.41475 6.74895 6.75697 6.78812 6.89307 7.11032 7.18702 7.34153 7.43086 7.51162 7.74891 7.78636 7.85283 7.99796 8.22870 8.38818 8.58711 9.01906 9.65095 11.10810 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.034019 B = 0.002162 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.861889 B =12950.655849 C =13191.703099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.068 3.932 3 C -0.119 4.119 4 C -0.506 4.506 5 H 0.052 0.948 6 C 0.064 3.936 7 N -0.883 5.883 8 Si 0.888 3.112 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.075 3.925 13 N -0.681 5.681 14 C 0.098 3.902 15 C -0.107 4.107 16 C -0.076 4.076 17 C -0.209 4.209 18 C 0.122 3.878 19 O -0.315 6.315 20 C 0.092 3.908 21 C -0.157 4.157 22 C -0.177 4.177 23 C -0.171 4.171 24 C -0.152 4.152 25 C -0.058 4.058 26 H 0.013 0.987 27 H 0.082 0.918 28 H 0.017 0.983 29 H 0.017 0.983 30 H 0.076 0.924 31 H 0.019 0.981 32 H 0.258 0.742 33 H 0.056 0.944 34 H 0.013 0.987 35 H 0.338 0.662 36 H 0.075 0.925 37 H 0.029 0.971 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.117 0.883 43 H 0.096 0.904 44 H 0.098 0.902 45 H 0.100 0.900 46 H 0.097 0.903 47 H 0.128 0.872 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.957 0.998 24.514 25.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.068 3.932 3 C -0.177 4.177 4 C -0.545 4.545 5 H 0.070 0.930 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.716 3.284 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.054 4.054 13 N -0.312 5.312 14 C -0.031 4.031 15 C -0.107 4.107 16 C -0.095 4.095 17 C -0.228 4.228 18 C 0.077 3.923 19 O -0.229 6.229 20 C 0.016 3.984 21 C -0.175 4.175 22 C -0.214 4.214 23 C -0.208 4.208 24 C -0.171 4.171 25 C -0.076 4.076 26 H 0.032 0.968 27 H 0.100 0.900 28 H 0.036 0.964 29 H 0.037 0.963 30 H 0.094 0.906 31 H 0.038 0.962 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.031 0.969 35 H 0.156 0.844 36 H 0.093 0.907 37 H 0.047 0.953 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.135 0.865 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.119 0.881 46 H 0.115 0.885 47 H 0.146 0.854 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.436 1.726 24.460 24.918 hybrid contribution -0.549 -1.533 -0.917 1.869 sum -4.986 0.193 23.543 24.066 Atomic orbital electron populations 1.21815 0.98626 0.97545 1.01097 1.18098 0.92020 0.93180 0.89941 1.21665 0.97763 0.98132 1.00129 1.21095 1.29357 1.13536 0.90489 0.93001 1.24890 0.95325 0.94781 0.98649 1.69847 1.38913 1.20484 1.22938 0.86686 0.78813 0.80040 0.82855 1.20819 1.21376 1.20139 1.22188 0.98986 0.94365 0.89812 1.60657 1.16410 1.53510 1.00669 1.20838 1.00153 0.94032 0.88082 1.19850 0.95268 0.98102 0.97500 1.20857 0.95149 0.98757 0.94708 1.21132 1.01357 0.99734 1.00576 1.18949 0.93834 0.92182 0.87362 1.86021 1.36514 1.57763 1.42610 1.22256 0.84156 0.97422 0.94517 1.22114 1.01198 1.01228 0.92926 1.23116 1.01753 1.00907 0.95588 1.23008 0.90444 1.03786 1.03520 1.20415 0.95088 1.03074 0.98515 1.20882 0.99675 0.93583 0.93507 0.96802 0.89971 0.96409 0.96346 0.90574 0.96174 0.93187 0.92510 0.96901 0.84358 0.90704 0.95295 0.86080 0.85937 0.91551 0.91993 0.86534 0.88537 0.88397 0.88128 0.88462 0.85411 0.85093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 7.82 37.16 0.29 -2.88 16 2 C 0.07 1.66 0.57 -155.66 -0.09 1.57 16 3 C -0.12 -2.95 8.12 37.16 0.30 -2.65 16 4 C -0.51 -13.68 8.01 -34.45 -0.28 -13.95 16 5 H 0.05 1.40 7.75 -52.48 -0.41 0.99 16 6 C 0.06 1.76 5.10 -17.82 -0.09 1.67 16 7 N -0.88 -24.61 9.38 55.43 0.52 -24.09 16 8 Si 0.89 21.19 29.54 -169.99 -5.02 16.16 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.07 1.57 4.59 -3.82 -0.02 1.55 16 13 N -0.68 -12.31 5.70 -115.06 -0.66 -12.97 16 14 C 0.10 1.46 5.81 -4.98 -0.03 1.43 16 15 C -0.11 -1.47 5.39 -104.60 -0.56 -2.03 16 16 C -0.08 -0.96 9.69 -39.60 -0.38 -1.35 16 17 C -0.21 -2.48 9.04 -39.43 -0.36 -2.84 16 18 C 0.12 1.53 6.69 -39.21 -0.26 1.27 16 19 O -0.32 -3.71 10.14 -19.42 -0.20 -3.91 16 20 C 0.09 0.80 5.02 37.16 0.19 0.99 16 21 C -0.16 -1.16 6.05 -90.62 -0.55 -1.71 16 22 C -0.18 -1.08 10.18 -26.70 -0.27 -1.35 16 23 C -0.17 -0.97 10.25 -26.69 -0.27 -1.24 16 24 C -0.15 -1.92 9.99 -39.43 -0.39 -2.32 16 25 C -0.06 -0.76 9.69 -39.61 -0.38 -1.15 16 26 H 0.01 0.29 6.84 -51.93 -0.36 -0.07 16 27 H 0.08 2.17 6.01 -51.93 -0.31 1.86 16 28 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.08 2.06 6.03 -51.93 -0.31 1.75 16 31 H 0.02 0.46 7.60 -51.93 -0.39 0.06 16 32 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.34 6.14 6.88 -39.29 -0.27 5.87 16 36 H 0.07 1.09 8.08 -51.93 -0.42 0.67 16 37 H 0.03 0.42 8.08 -51.93 -0.42 0.00 16 38 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 39 H 0.12 1.18 6.30 -52.49 -0.33 0.85 16 40 H 0.07 0.55 7.65 -51.93 -0.40 0.15 16 41 H 0.06 0.49 7.41 -51.93 -0.38 0.10 16 42 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.10 0.55 8.03 -51.93 -0.42 0.14 16 44 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 48 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 382.38 15.07 5.76 5.76 Total: -1.00 -28.56 382.38 -10.96 -39.52 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -8.21 Total: 4.50 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: -3.16 Total: -24.98 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: -0.14 Total: -37.06 kcal Atomic # 8 Polarization: -3.71 SS G_CDS: -0.20 Total: -3.91 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -28.56 -10.96 -39.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459731223.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.622 kcal (2) G-P(sol) polarization free energy of solvation -28.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds