Wall clock time and date at job start Tue Mar 31 2020 09:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47133 * 2 1 4 4 C 1.50693 * 109.47432 * 239.99867 * 2 1 3 5 5 H 1.08008 * 119.99840 * 237.61247 * 4 2 1 6 6 C 1.37870 * 120.00101 * 57.60737 * 4 2 1 7 7 N 1.31513 * 120.00408 * 6.35028 * 6 4 2 8 8 Si 1.86801 * 120.00169 * 186.34782 * 6 4 2 9 9 H 1.48501 * 109.47016 * 84.97536 * 8 6 4 10 10 H 1.48497 * 109.47587 * 204.97421 * 8 6 4 11 11 H 1.48497 * 109.47276 * 324.97956 * 8 6 4 12 12 C 1.53002 * 109.46915 * 119.99391 * 2 1 3 13 13 N 1.46897 * 109.47649 * 300.00627 * 12 2 1 14 14 C 1.46894 * 111.00152 * 179.97438 * 13 12 2 15 15 C 1.50705 * 109.47169 * 179.97438 * 14 13 12 16 16 C 1.38270 * 119.93904 * 90.00055 * 15 14 13 17 17 C 1.38149 * 120.05291 * 180.27417 * 16 15 14 18 18 C 1.38735 * 119.94228 * 359.45492 * 17 16 15 19 19 O 1.35899 * 120.05697 * 180.24973 * 18 17 16 20 20 C 1.42906 * 116.99660 * 0.27389 * 19 18 17 21 21 C 1.52997 * 109.46765 * 179.97438 * 20 19 18 22 22 C 1.52996 * 117.49837 * 243.74511 * 21 20 19 23 23 C 1.53000 * 117.49761 * 175.08632 * 21 20 19 24 24 C 1.38734 * 119.88925 * 0.52427 * 18 17 16 25 25 C 1.38149 * 119.94122 * 359.74524 * 24 18 17 26 26 H 1.08999 * 109.47342 * 305.10802 * 1 2 3 27 27 H 1.09000 * 109.47133 * 65.11392 * 1 2 3 28 28 H 1.08999 * 109.46985 * 185.10661 * 1 2 3 29 29 H 1.08999 * 109.46979 * 179.97438 * 3 2 1 30 30 H 1.08993 * 109.46852 * 300.00107 * 3 2 1 31 31 H 1.09003 * 109.46682 * 59.99611 * 3 2 1 32 32 H 0.96999 * 120.00658 * 180.02562 * 7 6 4 33 33 H 1.09006 * 109.47219 * 179.97438 * 12 2 1 34 34 H 1.09002 * 109.46891 * 60.00867 * 12 2 1 35 35 H 1.00902 * 111.00070 * 56.04548 * 13 12 2 36 36 H 1.09006 * 109.47303 * 59.99766 * 14 13 12 37 37 H 1.08998 * 109.47307 * 300.00005 * 14 13 12 38 38 H 1.07997 * 119.97639 * 359.97438 * 16 15 14 39 39 H 1.08001 * 120.02668 * 179.70229 * 17 16 15 40 40 H 1.09000 * 109.46942 * 299.99389 * 20 19 18 41 41 H 1.08994 * 109.47257 * 59.99853 * 20 19 18 42 42 H 1.08998 * 115.55292 * 29.41969 * 21 20 19 43 43 H 1.09002 * 117.49972 * 359.97438 * 22 21 20 44 44 H 1.09000 * 117.50280 * 145.02066 * 22 21 20 45 45 H 1.09002 * 117.50005 * 214.98018 * 23 21 20 46 46 H 1.09004 * 117.50080 * 359.97438 * 23 21 20 47 47 H 1.08000 * 120.03162 * 179.77422 * 24 18 17 48 48 H 1.07999 * 119.96790 * 179.97438 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6848 -1.5655 -1.1317 6 6 1.6591 -0.2689 -2.4820 7 7 0.9687 0.8433 -2.6082 8 14 2.1341 -1.2504 -3.9987 9 1 1.1294 -2.3188 -4.2316 10 1 2.1801 -0.3487 -5.1777 11 1 3.4705 -1.8642 -3.7927 12 6 2.0399 -0.7211 1.2493 13 7 1.5502 -0.0287 2.4487 14 6 2.0207 -0.6951 3.6704 15 6 1.5000 0.0423 4.8772 16 6 0.2828 -0.3113 5.4297 17 6 -0.1994 0.3668 6.5326 18 6 0.5440 1.3957 7.0925 19 8 0.0742 2.0609 8.1804 20 6 -1.1903 1.6440 8.6996 21 6 -1.5505 2.5017 9.9143 22 6 -1.6685 1.7965 11.2670 23 6 -2.9270 2.2875 10.5471 24 6 1.7652 1.7481 6.5364 25 6 2.2403 1.0706 5.4302 26 1 -0.3634 0.5910 0.8407 27 1 -0.3633 0.4325 -0.9322 28 1 -0.3633 -1.0236 0.0915 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 0.7058 1.1538 -3.4888 33 1 3.1300 -0.7216 1.2492 34 1 1.6767 -1.7488 1.2493 35 1 0.5436 0.0413 2.4402 36 1 3.1106 -0.6953 3.6874 37 1 1.6569 -1.7224 3.6870 38 1 -0.2937 -1.1149 4.9960 39 1 -1.1524 0.0935 6.9609 40 1 -1.9549 1.7617 7.9317 41 1 -1.1332 0.5974 8.9983 42 1 -1.1516 3.5160 9.9086 43 1 -1.4899 0.7215 11.2914 44 1 -1.3475 2.3470 12.1513 45 1 -3.4334 3.1609 10.9580 46 1 -3.5761 1.5359 10.0977 47 1 2.3441 2.5511 6.9682 48 1 3.1907 1.3449 4.9967 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459731223.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:22:39 Heat of formation + Delta-G solvation = -10.154296 kcal Electronic energy + Delta-G solvation = -23869.755118 eV Core-core repulsion = 20503.765788 eV Total energy + Delta-G solvation = -3365.989330 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.16304 -39.31749 -38.42968 -37.58193 -35.47958 -33.12835 -32.00077 -30.98149 -28.63861 -27.49063 -27.23643 -26.50395 -24.46519 -23.81126 -23.28655 -22.04123 -21.45646 -20.32482 -19.18937 -17.94000 -17.49999 -16.99729 -16.83112 -16.31804 -16.24630 -15.72744 -15.48908 -15.40477 -14.98631 -14.67788 -14.37517 -14.29896 -14.01546 -13.76800 -13.59642 -13.33153 -13.03950 -12.86729 -12.62420 -12.49559 -12.43814 -12.36460 -12.19555 -12.12950 -12.08049 -12.01071 -11.69793 -11.39220 -11.29493 -10.95016 -10.88837 -10.60374 -10.31513 -9.92154 -9.23084 -8.97504 -7.95439 -6.11842 0.42657 0.44545 1.43383 1.45161 1.53058 2.12243 2.47452 2.76764 2.86653 3.25923 3.63744 3.72582 3.87155 3.91211 3.93698 4.00226 4.07910 4.21093 4.26599 4.43567 4.47324 4.54987 4.56698 4.63448 4.69764 4.76426 4.77907 4.84837 4.90134 4.99090 5.04206 5.12596 5.18157 5.19264 5.21860 5.30437 5.32424 5.39545 5.45668 5.56069 5.71682 5.74676 5.77611 5.84392 6.18916 6.26584 6.35807 6.47244 6.51403 6.65238 6.97683 7.55225 9.02497 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.034019 B = 0.002162 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.861889 B =12950.655849 C =13191.703099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.058 3.942 3 C -0.105 4.105 4 C -0.524 4.524 5 H 0.046 0.954 6 C 0.020 3.980 7 N -0.903 5.903 8 Si 0.945 3.055 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.089 3.911 13 N -0.684 5.684 14 C 0.103 3.897 15 C -0.121 4.121 16 C -0.079 4.079 17 C -0.209 4.209 18 C 0.116 3.884 19 O -0.328 6.328 20 C 0.087 3.913 21 C -0.174 4.174 22 C -0.176 4.176 23 C -0.160 4.160 24 C -0.163 4.163 25 C -0.065 4.065 26 H 0.032 0.968 27 H 0.053 0.947 28 H 0.020 0.980 29 H 0.010 0.990 30 H 0.049 0.951 31 H 0.031 0.969 32 H 0.257 0.743 33 H 0.050 0.950 34 H 0.012 0.988 35 H 0.338 0.662 36 H 0.076 0.924 37 H 0.038 0.962 38 H 0.134 0.866 39 H 0.145 0.855 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.108 0.892 43 H 0.100 0.900 44 H 0.104 0.896 45 H 0.110 0.890 46 H 0.105 0.895 47 H 0.138 0.862 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.676 0.329 25.918 26.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.057 3.943 3 C -0.163 4.163 4 C -0.563 4.563 5 H 0.064 0.936 6 C -0.179 4.179 7 N -0.542 5.542 8 Si 0.771 3.229 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.198 1.198 12 C -0.039 4.039 13 N -0.315 5.315 14 C -0.026 4.026 15 C -0.122 4.122 16 C -0.098 4.098 17 C -0.228 4.228 18 C 0.071 3.929 19 O -0.242 6.242 20 C 0.012 3.988 21 C -0.193 4.193 22 C -0.213 4.213 23 C -0.197 4.197 24 C -0.181 4.181 25 C -0.084 4.084 26 H 0.051 0.949 27 H 0.072 0.928 28 H 0.039 0.961 29 H 0.029 0.971 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.030 0.970 35 H 0.156 0.844 36 H 0.095 0.905 37 H 0.056 0.944 38 H 0.152 0.848 39 H 0.162 0.838 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.126 0.874 43 H 0.119 0.881 44 H 0.122 0.878 45 H 0.128 0.872 46 H 0.124 0.876 47 H 0.155 0.845 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.157 1.054 25.883 26.412 hybrid contribution -0.353 -1.280 -1.252 1.825 sum -5.510 -0.227 24.631 25.241 Atomic orbital electron populations 1.21646 0.98232 0.97749 1.00322 1.18162 0.92375 0.92894 0.90830 1.21495 0.97053 0.98488 0.99287 1.21414 1.29421 1.13606 0.91871 0.93587 1.25555 0.95521 0.95621 1.01170 1.69982 1.39511 1.21391 1.23291 0.85786 0.78556 0.78769 0.79743 1.20395 1.21257 1.19834 1.21848 0.98419 0.93969 0.89708 1.60577 1.16368 1.53748 1.00838 1.20817 1.00277 0.94385 0.87085 1.19788 0.96135 0.98761 0.97510 1.21046 0.94831 0.99074 0.94855 1.21363 1.02090 0.99158 1.00172 1.19126 0.93909 0.92293 0.87578 1.86017 1.37908 1.57992 1.42285 1.22466 0.82996 0.98259 0.95043 1.22106 1.03023 1.00874 0.93256 1.23207 1.01883 1.01132 0.95044 1.23112 0.89901 1.04226 1.02436 1.20591 0.95553 1.03433 0.98555 1.20991 0.99971 0.93610 0.93786 0.94940 0.92787 0.96096 0.97116 0.93186 0.95020 0.93351 0.93144 0.97011 0.84352 0.90521 0.94424 0.84814 0.83752 0.91106 0.91004 0.87356 0.88137 0.87764 0.87187 0.87618 0.84451 0.84669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.73 7.82 71.98 0.56 -5.17 16 2 C 0.06 2.81 0.57 -52.93 -0.03 2.78 16 3 C -0.11 -5.23 8.12 71.98 0.58 -4.64 16 4 C -0.52 -28.35 8.01 25.60 0.20 -28.14 16 5 H 0.05 2.48 7.75 -2.91 -0.02 2.46 16 6 C 0.02 1.11 5.10 84.65 0.43 1.54 16 7 N -0.90 -50.74 9.38 21.44 0.20 -50.54 16 8 Si 0.94 43.45 29.54 68.60 2.03 45.48 16 9 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 10 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 11 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 12 C 0.09 3.67 4.59 86.30 0.40 4.07 16 13 N -0.68 -23.84 5.70 -517.93 -2.95 -26.80 16 14 C 0.10 2.92 5.81 85.56 0.50 3.42 16 15 C -0.12 -3.17 5.39 -19.85 -0.11 -3.28 16 16 C -0.08 -1.87 9.69 22.26 0.22 -1.65 16 17 C -0.21 -4.56 9.04 22.37 0.20 -4.35 16 18 C 0.12 2.77 6.69 22.51 0.15 2.92 16 19 O -0.33 -7.35 10.14 -92.41 -0.94 -8.28 16 20 C 0.09 1.38 5.02 71.98 0.36 1.74 16 21 C -0.17 -2.35 6.05 -10.80 -0.07 -2.42 16 22 C -0.18 -1.83 10.18 30.62 0.31 -1.52 16 23 C -0.16 -1.49 10.25 30.62 0.31 -1.18 16 24 C -0.16 -3.96 9.99 22.37 0.22 -3.74 16 25 C -0.07 -1.65 9.69 22.25 0.22 -1.43 16 26 H 0.03 1.36 6.84 -2.39 -0.02 1.34 16 27 H 0.05 2.86 6.01 -2.39 -0.01 2.84 16 28 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.05 2.73 6.03 -2.39 -0.01 2.72 16 31 H 0.03 1.44 7.60 -2.39 -0.02 1.42 16 32 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 33 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 34 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.34 11.74 6.88 -89.69 -0.62 11.13 16 36 H 0.08 2.14 8.08 -2.38 -0.02 2.12 16 37 H 0.04 1.01 8.08 -2.39 -0.02 0.99 16 38 H 0.13 2.73 8.06 -2.91 -0.02 2.71 16 39 H 0.14 2.41 6.30 -2.91 -0.02 2.39 16 40 H 0.07 1.04 7.65 -2.39 -0.02 1.02 16 41 H 0.07 0.98 7.41 -2.39 -0.02 0.96 16 42 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.10 0.96 8.03 -2.39 -0.02 0.94 16 44 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.11 0.81 8.14 -2.38 -0.02 0.79 16 47 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 48 H 0.14 3.20 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -59.79 382.38 3.11 -56.67 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: 0.31 Total: 24.52 kcal Atomic # 6 Polarization: -45.52 SS G_CDS: 4.47 Total: -41.05 kcal Atomic # 7 Polarization: -74.58 SS G_CDS: -2.75 Total: -77.34 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: -0.94 Total: -8.28 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -59.79 3.11 -56.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459731223.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.520 kcal (2) G-P(sol) polarization free energy of solvation -59.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds