Wall clock time and date at job start Tue Mar 31 2020 09:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35901 * 116.99937 * 2 1 4 4 C 1.38764 * 120.17341 * 359.97438 * 3 2 1 5 5 C 1.37832 * 119.71104 * 180.12526 * 4 3 2 6 6 C 1.39015 * 120.61656 * 359.97416 * 5 4 3 7 7 C 1.37659 * 119.76653 * 359.87810 * 6 5 4 8 8 C 1.38426 * 120.17691 * 179.97438 * 3 2 1 9 9 C 1.50647 * 122.55317 * 180.28116 * 7 6 5 10 10 C 1.52733 * 110.59486 * 342.43091 * 9 7 6 11 11 C 1.53329 * 108.36652 * 51.06357 * 10 9 7 12 12 C 1.50650 * 117.65194 * 179.72426 * 6 5 4 13 13 H 1.08998 * 109.25227 * 282.80273 * 12 6 5 14 14 N 1.46902 * 109.25157 * 42.26890 * 12 6 5 15 15 C 1.46905 * 110.99562 * 210.34329 * 14 12 6 16 16 C 1.52999 * 109.46642 * 185.27739 * 15 14 12 17 17 C 1.53005 * 109.46991 * 60.00552 * 16 15 14 18 18 C 1.52998 * 109.47864 * 300.00462 * 16 15 14 19 19 C 1.50698 * 109.47059 * 179.97438 * 16 15 14 20 20 H 1.08003 * 120.00274 * 354.17250 * 19 16 15 21 21 C 1.37880 * 120.00211 * 174.16520 * 19 16 15 22 22 N 1.31515 * 120.00432 * 209.43075 * 21 19 16 23 23 Si 1.86800 * 119.99606 * 29.43513 * 21 19 16 24 24 H 1.48502 * 109.46927 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47281 * 299.99804 * 23 21 19 26 26 H 1.48497 * 109.47276 * 59.99959 * 23 21 19 27 27 H 1.08993 * 109.47524 * 300.00362 * 1 2 3 28 28 H 1.09004 * 109.46900 * 60.00124 * 1 2 3 29 29 H 1.08994 * 109.46772 * 179.97438 * 1 2 3 30 30 H 1.07993 * 120.14262 * 0.14543 * 4 3 2 31 31 H 1.07998 * 119.68923 * 179.97438 * 5 4 3 32 32 H 1.08007 * 119.74565 * 359.95355 * 8 3 2 33 33 H 1.08998 * 109.25128 * 222.14062 * 9 7 6 34 34 H 1.09001 * 109.25021 * 102.71811 * 9 7 6 35 35 H 1.08997 * 109.68266 * 291.34613 * 10 9 7 36 36 H 1.09000 * 109.71325 * 170.80547 * 10 9 7 37 37 H 1.09004 * 109.68053 * 170.33395 * 11 10 9 38 38 H 1.09004 * 109.68491 * 49.77847 * 11 10 9 39 39 H 1.00894 * 110.99873 * 334.29839 * 14 12 6 40 40 H 1.09003 * 109.46882 * 65.28535 * 15 14 12 41 41 H 1.08992 * 109.47390 * 305.27833 * 15 14 12 42 42 H 1.08996 * 109.47391 * 175.55652 * 17 16 15 43 43 H 1.09000 * 109.46769 * 295.55922 * 17 16 15 44 44 H 1.09001 * 109.47034 * 55.55776 * 17 16 15 45 45 H 1.09005 * 109.46657 * 305.46463 * 18 16 15 46 46 H 1.09002 * 109.47036 * 65.45726 * 18 16 15 47 47 H 1.08996 * 109.47482 * 185.46046 * 18 16 15 48 48 H 0.97001 * 119.99535 * 355.00118 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2937 2.3769 -0.0005 5 6 1.9293 3.6000 -0.0031 6 6 3.3174 3.6765 -0.0047 7 6 4.0655 2.5209 -0.0011 8 6 3.4281 1.2876 0.0005 9 6 5.5720 2.5306 0.0037 10 6 6.1018 3.8966 -0.4276 11 6 5.4060 4.9726 0.4145 12 6 3.9420 5.0473 -0.0140 13 1 3.8828 5.4625 -1.0200 14 7 3.2097 5.9196 0.9139 15 6 3.2487 7.3175 0.4639 16 6 2.5919 8.2110 1.5180 17 6 3.3489 8.0798 2.8411 18 6 1.1375 7.7798 1.7176 19 6 2.6325 9.6450 1.0568 20 1 3.1636 9.9071 0.1536 21 6 1.9914 10.6227 1.7877 22 7 1.5165 11.6902 1.1839 23 14 1.7975 10.4311 3.6357 24 1 1.0789 11.6098 4.1829 25 1 1.0217 9.1988 3.9268 26 1 3.1382 10.3326 4.2665 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.2150 2.3264 0.0014 31 1 1.3435 4.5072 -0.0040 32 1 4.0151 0.3810 0.0017 33 1 5.9384 1.7692 -0.6848 34 1 5.9296 2.3074 1.0089 35 1 5.8836 4.0584 -1.4832 36 1 7.1786 3.9416 -0.2642 37 1 5.8869 5.9366 0.2485 38 1 5.4666 4.7086 1.4704 39 1 2.2586 5.6042 1.0321 40 1 2.7094 7.4109 -0.4787 41 1 4.2848 7.6246 0.3218 42 1 2.9306 8.7744 3.5695 43 1 3.2534 7.0603 3.2148 44 1 4.4021 8.3112 2.6817 45 1 0.6233 7.7804 0.7565 46 1 1.1111 6.7767 2.1432 47 1 0.6422 8.4752 2.3953 48 1 1.6802 11.8251 0.2373 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459736243.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:28:09 Heat of formation + Delta-G solvation = -14.990097 kcal Electronic energy + Delta-G solvation = -25476.003504 eV Core-core repulsion = 22109.804478 eV Total energy + Delta-G solvation = -3366.199026 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.62164 -38.92463 -36.95953 -35.35117 -34.06606 -31.83083 -30.60110 -29.72869 -28.39150 -26.99467 -26.11691 -24.97902 -24.01413 -23.21516 -22.38414 -21.35052 -19.49223 -18.75447 -17.84110 -16.80512 -16.45320 -16.02541 -15.90589 -15.37632 -14.71901 -14.52812 -14.35486 -14.17901 -13.60547 -13.39220 -13.17370 -12.96990 -12.91101 -12.58414 -12.40012 -12.22543 -12.08996 -12.02049 -11.85552 -11.53975 -11.27193 -11.12299 -10.87810 -10.85655 -10.55955 -10.33806 -10.18757 -9.97342 -9.85384 -9.77937 -8.91134 -8.84029 -8.72069 -8.30657 -7.93077 -7.72247 -6.46907 -3.98169 1.23779 1.35187 3.08618 3.42635 3.48270 3.62690 3.70303 4.52180 4.55028 4.62327 4.66493 4.76381 4.86725 4.91209 5.00428 5.06608 5.14753 5.21157 5.23094 5.25786 5.43321 5.48166 5.58289 5.71281 5.81713 5.88900 5.93410 5.98767 6.03185 6.11190 6.17409 6.25366 6.37058 6.39160 6.45477 6.58059 6.62126 6.69447 6.70607 6.73620 6.92218 7.00102 7.08429 7.25348 7.45512 7.58828 7.65311 7.88849 8.35398 8.41072 8.96232 9.65724 10.92453 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.018142 B = 0.003705 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.975059 B = 7555.152996 C = 8529.879498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.121 3.879 4 C -0.205 4.205 5 C -0.079 4.079 6 C -0.103 4.103 7 C -0.030 4.030 8 C -0.156 4.156 9 C -0.079 4.079 10 C -0.120 4.120 11 C -0.106 4.106 12 C 0.129 3.871 13 H 0.051 0.949 14 N -0.684 5.684 15 C 0.085 3.915 16 C 0.049 3.951 17 C -0.134 4.134 18 C -0.143 4.143 19 C -0.609 4.609 20 H 0.053 0.947 21 C 0.038 3.962 22 N -0.895 5.895 23 Si 1.060 2.940 24 H -0.303 1.303 25 H -0.277 1.277 26 H -0.288 1.288 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.127 0.873 31 H 0.124 0.876 32 H 0.127 0.873 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.337 0.663 40 H 0.018 0.982 41 H 0.061 0.939 42 H 0.029 0.971 43 H 0.039 0.961 44 H 0.041 0.959 45 H 0.036 0.964 46 H 0.025 0.975 47 H 0.053 0.947 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.737 -22.596 -2.997 22.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.076 3.924 4 C -0.223 4.223 5 C -0.097 4.097 6 C -0.104 4.104 7 C -0.031 4.031 8 C -0.175 4.175 9 C -0.116 4.116 10 C -0.158 4.158 11 C -0.144 4.144 12 C 0.019 3.981 13 H 0.068 0.932 14 N -0.318 5.318 15 C -0.044 4.044 16 C 0.048 3.952 17 C -0.190 4.190 18 C -0.200 4.200 19 C -0.647 4.647 20 H 0.071 0.929 21 C -0.168 4.168 22 N -0.528 5.528 23 Si 0.894 3.106 24 H -0.231 1.231 25 H -0.205 1.205 26 H -0.216 1.216 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.116 0.884 30 H 0.145 0.855 31 H 0.142 0.858 32 H 0.145 0.855 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.158 0.842 40 H 0.036 0.964 41 H 0.079 0.921 42 H 0.048 0.952 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.055 0.945 46 H 0.044 0.956 47 H 0.072 0.928 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.659 -21.981 -1.257 22.177 hybrid contribution -0.330 -0.554 -2.146 2.240 sum 2.330 -22.535 -3.403 22.909 Atomic orbital electron populations 1.23031 0.78509 1.03718 1.01470 1.86038 1.21286 1.27080 1.89023 1.18871 0.92302 0.84004 0.97219 1.21115 0.99921 0.92233 1.09073 1.20972 0.94193 0.97238 0.97311 1.19705 0.93010 0.94868 1.02835 1.19355 0.95592 0.91178 0.96980 1.20340 0.91275 0.97997 1.07869 1.20492 0.90499 0.98388 1.02238 1.21570 0.99822 0.94213 1.00165 1.21546 0.93840 0.98544 1.00444 1.20277 0.94292 0.88604 0.94894 0.93156 1.60795 1.19840 1.02943 1.48189 1.22037 1.00073 0.85626 0.96622 1.18352 0.90648 0.94753 0.91469 1.22124 0.99914 0.98465 0.98544 1.22224 0.99420 0.98273 1.00094 1.21740 1.39719 0.91404 1.11827 0.92860 1.25704 0.91912 0.93729 1.05496 1.70897 1.35929 1.32665 1.13279 0.84019 0.75945 0.74462 0.76138 1.23150 1.20475 1.21600 0.92592 0.92715 0.88403 0.85550 0.85790 0.85505 0.90838 0.90263 0.91858 0.91287 0.91468 0.90754 0.84161 0.96401 0.92077 0.95230 0.94167 0.93935 0.94480 0.95578 0.92815 0.92181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.82 101.05 0.99 1.20 16 2 O -0.32 -3.61 10.50 -19.43 -0.20 -3.81 16 3 C 0.12 1.49 6.68 -39.32 -0.26 1.22 16 4 C -0.20 -2.47 9.04 -39.54 -0.36 -2.83 16 5 C -0.08 -1.05 8.78 -39.44 -0.35 -1.39 16 6 C -0.10 -1.41 5.55 -104.57 -0.58 -1.99 16 7 C -0.03 -0.37 5.73 -104.64 -0.60 -0.97 16 8 C -0.16 -1.87 9.55 -39.29 -0.38 -2.25 16 9 C -0.08 -0.79 5.67 -28.05 -0.16 -0.95 16 10 C -0.12 -1.25 5.98 -26.70 -0.16 -1.41 16 11 C -0.11 -1.39 5.49 -26.70 -0.15 -1.53 16 12 C 0.13 1.88 2.53 -69.03 -0.17 1.71 16 13 H 0.05 0.77 7.77 -51.93 -0.40 0.37 16 14 N -0.68 -11.59 5.53 -108.13 -0.60 -12.19 16 15 C 0.08 1.71 4.33 -3.82 -0.02 1.69 16 16 C 0.05 1.14 0.57 -155.66 -0.09 1.05 16 17 C -0.13 -2.98 7.76 37.16 0.29 -2.69 16 18 C -0.14 -3.15 7.66 37.16 0.28 -2.86 16 19 C -0.61 -16.92 8.41 -34.44 -0.29 -17.21 16 20 H 0.05 1.59 7.99 -52.48 -0.42 1.17 16 21 C 0.04 1.09 5.06 -17.82 -0.09 1.00 16 22 N -0.89 -27.38 13.70 55.43 0.76 -26.62 16 23 Si 1.06 26.27 23.52 -169.99 -4.00 22.27 16 24 H -0.30 -7.63 7.11 56.52 0.40 -7.22 16 25 H -0.28 -6.39 5.73 56.52 0.32 -6.06 16 26 H -0.29 -6.83 6.70 56.52 0.38 -6.45 16 27 H 0.06 0.39 7.67 -51.93 -0.40 -0.01 16 28 H 0.05 0.37 7.67 -51.93 -0.40 -0.03 16 29 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.13 1.26 6.33 -52.49 -0.33 0.93 16 31 H 0.12 1.63 6.62 -52.49 -0.35 1.29 16 32 H 0.13 1.31 8.05 -52.48 -0.42 0.89 16 33 H 0.07 0.62 8.12 -51.93 -0.42 0.19 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.93 7.87 -51.93 -0.41 0.52 16 38 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 39 H 0.34 5.59 4.42 -39.29 -0.17 5.42 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 1.26 7.82 -51.93 -0.41 0.85 16 42 H 0.03 0.68 2.28 -51.93 -0.12 0.56 16 43 H 0.04 0.82 7.75 -51.93 -0.40 0.41 16 44 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.03 0.50 6.99 -51.93 -0.36 0.13 16 47 H 0.05 1.26 4.40 -51.93 -0.23 1.03 16 48 H 0.27 8.14 8.73 -40.82 -0.36 7.78 16 LS Contribution 356.92 15.07 5.38 5.38 Total: -1.00 -30.49 356.92 -8.62 -39.11 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -7.87 Total: 4.07 kcal Atomic # 6 Polarization: -26.13 SS G_CDS: -2.08 Total: -28.21 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.16 Total: -38.81 kcal Atomic # 8 Polarization: -3.61 SS G_CDS: -0.20 Total: -3.81 kcal Atomic # 14 Polarization: 26.27 SS G_CDS: -4.00 Total: 22.27 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.49 -8.62 -39.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459736243.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.123 kcal (2) G-P(sol) polarization free energy of solvation -30.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds