Wall clock time and date at job start Tue Mar 31 2020 09:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35901 * 116.99937 * 2 1 4 4 C 1.38764 * 120.17341 * 359.97438 * 3 2 1 5 5 C 1.37832 * 119.71104 * 180.12526 * 4 3 2 6 6 C 1.39015 * 120.61656 * 359.97416 * 5 4 3 7 7 C 1.37659 * 119.76653 * 359.87810 * 6 5 4 8 8 C 1.38426 * 120.17691 * 179.97438 * 3 2 1 9 9 C 1.50647 * 122.55317 * 180.28116 * 7 6 5 10 10 C 1.52733 * 110.59486 * 342.43091 * 9 7 6 11 11 C 1.53329 * 108.36652 * 51.06357 * 10 9 7 12 12 C 1.50650 * 117.65194 * 179.72426 * 6 5 4 13 13 H 1.08998 * 109.25227 * 282.80273 * 12 6 5 14 14 N 1.46902 * 109.25157 * 42.26890 * 12 6 5 15 15 C 1.46905 * 110.99562 * 210.34329 * 14 12 6 16 16 C 1.52999 * 109.46642 * 185.27739 * 15 14 12 17 17 C 1.53005 * 109.46991 * 60.00552 * 16 15 14 18 18 C 1.52998 * 109.47864 * 300.00462 * 16 15 14 19 19 C 1.50698 * 109.47059 * 179.97438 * 16 15 14 20 20 H 1.08003 * 120.00274 * 354.17250 * 19 16 15 21 21 C 1.37880 * 120.00211 * 174.16520 * 19 16 15 22 22 N 1.31515 * 120.00432 * 209.43075 * 21 19 16 23 23 Si 1.86800 * 119.99606 * 29.43513 * 21 19 16 24 24 H 1.48502 * 109.46927 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47281 * 299.99804 * 23 21 19 26 26 H 1.48497 * 109.47276 * 59.99959 * 23 21 19 27 27 H 1.08993 * 109.47524 * 300.00362 * 1 2 3 28 28 H 1.09004 * 109.46900 * 60.00124 * 1 2 3 29 29 H 1.08994 * 109.46772 * 179.97438 * 1 2 3 30 30 H 1.07993 * 120.14262 * 0.14543 * 4 3 2 31 31 H 1.07998 * 119.68923 * 179.97438 * 5 4 3 32 32 H 1.08007 * 119.74565 * 359.95355 * 8 3 2 33 33 H 1.08998 * 109.25128 * 222.14062 * 9 7 6 34 34 H 1.09001 * 109.25021 * 102.71811 * 9 7 6 35 35 H 1.08997 * 109.68266 * 291.34613 * 10 9 7 36 36 H 1.09000 * 109.71325 * 170.80547 * 10 9 7 37 37 H 1.09004 * 109.68053 * 170.33395 * 11 10 9 38 38 H 1.09004 * 109.68491 * 49.77847 * 11 10 9 39 39 H 1.00894 * 110.99873 * 334.29839 * 14 12 6 40 40 H 1.09003 * 109.46882 * 65.28535 * 15 14 12 41 41 H 1.08992 * 109.47390 * 305.27833 * 15 14 12 42 42 H 1.08996 * 109.47391 * 175.55652 * 17 16 15 43 43 H 1.09000 * 109.46769 * 295.55922 * 17 16 15 44 44 H 1.09001 * 109.47034 * 55.55776 * 17 16 15 45 45 H 1.09005 * 109.46657 * 305.46463 * 18 16 15 46 46 H 1.09002 * 109.47036 * 65.45726 * 18 16 15 47 47 H 1.08996 * 109.47482 * 185.46046 * 18 16 15 48 48 H 0.97001 * 119.99535 * 355.00118 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2937 2.3769 -0.0005 5 6 1.9293 3.6000 -0.0031 6 6 3.3174 3.6765 -0.0047 7 6 4.0655 2.5209 -0.0011 8 6 3.4281 1.2876 0.0005 9 6 5.5720 2.5306 0.0037 10 6 6.1018 3.8966 -0.4276 11 6 5.4060 4.9726 0.4145 12 6 3.9420 5.0473 -0.0140 13 1 3.8828 5.4625 -1.0200 14 7 3.2097 5.9196 0.9139 15 6 3.2487 7.3175 0.4639 16 6 2.5919 8.2110 1.5180 17 6 3.3489 8.0798 2.8411 18 6 1.1375 7.7798 1.7176 19 6 2.6325 9.6450 1.0568 20 1 3.1636 9.9071 0.1536 21 6 1.9914 10.6227 1.7877 22 7 1.5165 11.6902 1.1839 23 14 1.7975 10.4311 3.6357 24 1 1.0789 11.6098 4.1829 25 1 1.0217 9.1988 3.9268 26 1 3.1382 10.3326 4.2665 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.2150 2.3264 0.0014 31 1 1.3435 4.5072 -0.0040 32 1 4.0151 0.3810 0.0017 33 1 5.9384 1.7692 -0.6848 34 1 5.9296 2.3074 1.0089 35 1 5.8836 4.0584 -1.4832 36 1 7.1786 3.9416 -0.2642 37 1 5.8869 5.9366 0.2485 38 1 5.4666 4.7086 1.4704 39 1 2.2586 5.6042 1.0321 40 1 2.7094 7.4109 -0.4787 41 1 4.2848 7.6246 0.3218 42 1 2.9306 8.7744 3.5695 43 1 3.2534 7.0603 3.2148 44 1 4.4021 8.3112 2.6817 45 1 0.6233 7.7804 0.7565 46 1 1.1111 6.7767 2.1432 47 1 0.6422 8.4752 2.3953 48 1 1.6802 11.8251 0.2373 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459736243.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:28:08 Heat of formation + Delta-G solvation = -33.248189 kcal Electronic energy + Delta-G solvation = -25476.795234 eV Core-core repulsion = 22109.804478 eV Total energy + Delta-G solvation = -3366.990756 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.54829 -39.88595 -38.53038 -36.41472 -35.39644 -33.76588 -31.77860 -30.64792 -29.42352 -27.95927 -27.68758 -26.78356 -25.77686 -24.24566 -23.31365 -22.44065 -20.75340 -20.35517 -18.82903 -18.65935 -17.33595 -17.25978 -16.71423 -16.56232 -16.35956 -15.76392 -15.52546 -15.24685 -14.75010 -14.69429 -14.42321 -14.40432 -14.03300 -13.97094 -13.77379 -13.65957 -13.50399 -13.21866 -13.00539 -12.86087 -12.56927 -12.27477 -12.12576 -11.95334 -11.86952 -11.76882 -11.71470 -11.61539 -11.34690 -11.29136 -10.92289 -10.56566 -10.14511 -9.73787 -9.47469 -8.91872 -8.75272 -6.26962 0.32188 0.39502 1.44681 1.51169 1.74760 2.35039 2.46674 2.68059 3.02151 3.35419 3.66738 3.72559 3.85840 4.05451 4.18730 4.20479 4.23071 4.29416 4.37316 4.38170 4.38898 4.45056 4.58179 4.59175 4.60364 4.72631 4.82055 4.83796 4.91950 4.93480 4.97916 5.01901 5.04830 5.09888 5.13214 5.18740 5.21170 5.30655 5.34303 5.42721 5.47217 5.61481 5.68140 5.79186 5.85435 6.04694 6.11678 6.28263 6.42941 6.54460 6.66972 7.44978 8.62431 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.018142 B = 0.003705 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.975059 B = 7555.152996 C = 8529.879498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.332 6.332 3 C 0.117 3.883 4 C -0.208 4.208 5 C -0.092 4.092 6 C -0.122 4.122 7 C -0.031 4.031 8 C -0.163 4.163 9 C -0.077 4.077 10 C -0.113 4.113 11 C -0.104 4.104 12 C 0.131 3.869 13 H 0.038 0.962 14 N -0.678 5.678 15 C 0.100 3.900 16 C 0.042 3.958 17 C -0.129 4.129 18 C -0.138 4.138 19 C -0.611 4.611 20 H 0.015 0.985 21 C -0.009 4.009 22 N -0.929 5.929 23 Si 1.094 2.906 24 H -0.311 1.311 25 H -0.245 1.245 26 H -0.270 1.270 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.121 0.879 30 H 0.144 0.856 31 H 0.119 0.881 32 H 0.144 0.856 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.060 0.940 36 H 0.088 0.912 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.340 0.660 40 H 0.001 0.999 41 H 0.051 0.949 42 H 0.025 0.975 43 H 0.063 0.937 44 H 0.038 0.962 45 H 0.030 0.970 46 H 0.058 0.942 47 H 0.040 0.960 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.035 -25.914 -1.696 26.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.246 6.246 3 C 0.072 3.928 4 C -0.227 4.227 5 C -0.110 4.110 6 C -0.123 4.123 7 C -0.032 4.032 8 C -0.181 4.181 9 C -0.114 4.114 10 C -0.151 4.151 11 C -0.142 4.142 12 C 0.022 3.978 13 H 0.055 0.945 14 N -0.311 5.311 15 C -0.029 4.029 16 C 0.041 3.959 17 C -0.186 4.186 18 C -0.195 4.195 19 C -0.649 4.649 20 H 0.033 0.967 21 C -0.209 4.209 22 N -0.564 5.564 23 Si 0.921 3.079 24 H -0.240 1.240 25 H -0.170 1.170 26 H -0.197 1.197 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.139 0.861 30 H 0.162 0.838 31 H 0.137 0.863 32 H 0.162 0.838 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.162 0.838 40 H 0.020 0.980 41 H 0.069 0.931 42 H 0.043 0.957 43 H 0.082 0.918 44 H 0.057 0.943 45 H 0.049 0.951 46 H 0.077 0.923 47 H 0.059 0.941 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.964 -25.337 0.028 25.510 hybrid contribution -0.430 0.406 -2.672 2.737 sum 2.535 -24.931 -2.644 25.199 Atomic orbital electron populations 1.23317 0.76661 1.05548 1.02046 1.86031 1.23240 1.26548 1.88767 1.19064 0.92721 0.84439 0.96612 1.21285 1.00929 0.91755 1.08713 1.21028 0.94266 0.97651 0.98082 1.19656 0.93337 0.94565 1.04724 1.19600 0.96832 0.90738 0.96030 1.20593 0.91548 0.98492 1.07491 1.20557 0.88925 0.98504 1.03425 1.21542 1.00697 0.93514 0.99386 1.21522 0.92960 0.99050 1.00683 1.20287 0.94998 0.88878 0.93681 0.94459 1.60757 1.20282 1.01419 1.48684 1.21678 0.98788 0.87393 0.95008 1.18359 0.92201 0.92411 0.92938 1.22037 0.99373 0.99777 0.97396 1.22124 0.97949 0.99700 0.99761 1.22006 1.38336 0.94348 1.10163 0.96713 1.26979 0.91623 0.93138 1.09135 1.71023 1.38529 1.34298 1.12528 0.83631 0.77248 0.75505 0.71522 1.23989 1.17009 1.19663 0.92053 0.92059 0.86078 0.83826 0.86316 0.83812 0.88653 0.89220 0.92081 0.89299 0.92722 0.91214 0.83827 0.98044 0.93064 0.95655 0.91765 0.94256 0.95106 0.92313 0.94103 0.93735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.82 113.37 1.11 1.34 16 2 O -0.33 -6.67 10.50 -92.44 -0.97 -7.64 16 3 C 0.12 2.62 6.68 22.44 0.15 2.77 16 4 C -0.21 -4.66 9.04 22.30 0.20 -4.46 16 5 C -0.09 -2.34 8.78 22.36 0.20 -2.14 16 6 C -0.12 -3.18 5.55 -19.83 -0.11 -3.29 16 7 C -0.03 -0.70 5.73 -19.88 -0.11 -0.82 16 8 C -0.16 -3.50 9.55 22.46 0.21 -3.28 16 9 C -0.08 -1.32 5.67 29.74 0.17 -1.15 16 10 C -0.11 -2.12 5.98 30.62 0.18 -1.93 16 11 C -0.10 -2.62 5.49 30.61 0.17 -2.45 16 12 C 0.13 3.74 2.53 44.06 0.11 3.85 16 13 H 0.04 1.16 7.77 -2.39 -0.02 1.14 16 14 N -0.68 -22.37 5.53 -496.00 -2.74 -25.11 16 15 C 0.10 4.08 4.33 86.30 0.37 4.45 16 16 C 0.04 1.94 0.57 -52.93 -0.03 1.91 16 17 C -0.13 -5.49 7.76 71.98 0.56 -4.93 16 18 C -0.14 -5.89 7.66 71.98 0.55 -5.34 16 19 C -0.61 -34.78 8.41 25.60 0.22 -34.57 16 20 H 0.01 0.92 7.99 -2.91 -0.02 0.90 16 21 C -0.01 -0.52 5.06 84.66 0.43 -0.09 16 22 N -0.93 -58.69 13.70 21.45 0.29 -58.40 16 23 Si 1.09 52.19 23.52 68.60 1.61 53.80 16 24 H -0.31 -15.19 7.11 99.48 0.71 -14.48 16 25 H -0.24 -10.39 5.73 99.48 0.57 -9.82 16 26 H -0.27 -12.02 6.70 99.48 0.67 -11.35 16 27 H 0.06 0.70 7.67 -2.39 -0.02 0.68 16 28 H 0.06 0.68 7.67 -2.38 -0.02 0.67 16 29 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.14 2.57 6.33 -2.91 -0.02 2.55 16 31 H 0.12 3.06 6.62 -2.91 -0.02 3.04 16 32 H 0.14 2.53 8.05 -2.91 -0.02 2.50 16 33 H 0.10 1.25 8.12 -2.39 -0.02 1.23 16 34 H 0.09 1.38 8.14 -2.39 -0.02 1.37 16 35 H 0.06 1.17 8.10 -2.39 -0.02 1.15 16 36 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.05 1.49 7.87 -2.38 -0.02 1.47 16 38 H 0.07 1.82 8.10 -2.38 -0.02 1.80 16 39 H 0.34 10.83 4.42 -89.70 -0.40 10.44 16 40 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 41 H 0.05 2.16 7.82 -2.39 -0.02 2.14 16 42 H 0.03 1.10 2.28 -2.39 -0.01 1.09 16 43 H 0.06 2.41 7.75 -2.39 -0.02 2.39 16 44 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 46 H 0.06 2.10 6.99 -2.39 -0.02 2.09 16 47 H 0.04 1.83 4.40 -2.39 -0.01 1.82 16 48 H 0.25 16.20 8.73 -92.71 -0.81 15.39 16 Total: -1.00 -67.00 356.92 2.91 -64.10 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 0.33 Total: 23.38 kcal Atomic # 6 Polarization: -54.50 SS G_CDS: 4.38 Total: -50.12 kcal Atomic # 7 Polarization: -81.06 SS G_CDS: -2.45 Total: -83.51 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: -0.97 Total: -7.64 kcal Atomic # 14 Polarization: 52.19 SS G_CDS: 1.61 Total: 53.80 kcal Total: -67.00 2.91 -64.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459736243.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.848 kcal (2) G-P(sol) polarization free energy of solvation -67.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds