Wall clock time and date at job start Tue Mar 31 2020 09:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35892 * 117.00106 * 2 1 4 4 C 1.38760 * 120.17542 * 359.97438 * 3 2 1 5 5 C 1.37834 * 119.71050 * 179.91750 * 4 3 2 6 6 C 1.38961 * 120.62675 * 0.02562 * 5 4 3 7 7 C 1.37713 * 119.77271 * 0.17283 * 6 5 4 8 8 C 1.38427 * 120.17217 * 179.97438 * 3 2 1 9 9 C 1.50633 * 122.57172 * 179.68658 * 7 6 5 10 10 C 1.52732 * 110.59489 * 17.53111 * 9 7 6 11 11 C 1.53338 * 108.36921 * 308.93464 * 10 9 7 12 12 C 1.50658 * 117.68601 * 180.22539 * 6 5 4 13 13 H 1.08995 * 109.21959 * 77.23647 * 12 6 5 14 14 N 1.46905 * 109.25258 * 317.79348 * 12 6 5 15 15 C 1.46891 * 110.99806 * 153.35584 * 14 12 6 16 16 C 1.53002 * 109.47093 * 174.45567 * 15 14 12 17 17 C 1.53004 * 109.47072 * 299.99669 * 16 15 14 18 18 C 1.52995 * 109.46914 * 59.99756 * 16 15 14 19 19 C 1.50705 * 109.47024 * 179.97438 * 16 15 14 20 20 H 1.08001 * 119.99991 * 354.65858 * 19 16 15 21 21 C 1.37880 * 119.99555 * 174.66238 * 19 16 15 22 22 N 1.31513 * 119.99803 * 199.57484 * 21 19 16 23 23 Si 1.86801 * 120.00211 * 19.57932 * 21 19 16 24 24 H 1.48502 * 109.47304 * 84.23783 * 23 21 19 25 25 H 1.48498 * 109.47026 * 204.23808 * 23 21 19 26 26 H 1.48504 * 109.47013 * 324.23736 * 23 21 19 27 27 H 1.08998 * 109.47422 * 300.00354 * 1 2 3 28 28 H 1.09007 * 109.46944 * 60.00119 * 1 2 3 29 29 H 1.08993 * 109.47575 * 179.97438 * 1 2 3 30 30 H 1.07990 * 120.14625 * 359.89480 * 4 3 2 31 31 H 1.07997 * 119.68756 * 180.02562 * 5 4 3 32 32 H 1.08000 * 119.74635 * 0.02562 * 8 3 2 33 33 H 1.09008 * 109.25155 * 257.24581 * 9 7 6 34 34 H 1.09000 * 109.22585 * 137.80303 * 9 7 6 35 35 H 1.09000 * 109.69006 * 189.21754 * 10 9 7 36 36 H 1.08995 * 109.68546 * 68.65098 * 10 9 7 37 37 H 1.09000 * 109.68182 * 310.22725 * 11 10 9 38 38 H 1.08994 * 109.68230 * 189.66526 * 11 10 9 39 39 H 1.00896 * 110.99481 * 29.39826 * 14 12 6 40 40 H 1.09005 * 109.47167 * 294.45137 * 15 14 12 41 41 H 1.08999 * 109.47536 * 54.45063 * 15 14 12 42 42 H 1.09000 * 109.46934 * 67.42838 * 17 16 15 43 43 H 1.09001 * 109.47248 * 187.42861 * 17 16 15 44 44 H 1.08996 * 109.47064 * 307.42984 * 17 16 15 45 45 H 1.09000 * 109.47802 * 60.00487 * 18 16 15 46 46 H 1.09011 * 109.47026 * 179.97438 * 18 16 15 47 47 H 1.08999 * 109.47208 * 299.99993 * 18 16 15 48 48 H 0.97001 * 120.00139 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2938 2.3769 -0.0005 5 6 1.9295 3.5998 0.0012 6 6 3.3170 3.6765 0.0029 7 6 4.0657 2.5206 -0.0007 8 6 3.4281 1.2874 0.0005 9 6 5.5720 2.5302 -0.0060 10 6 6.1021 3.8965 0.4239 11 6 5.4062 4.9719 -0.4190 12 6 3.9424 5.0471 0.0100 13 1 3.8834 5.4632 1.0157 14 7 3.2097 5.9186 -0.9183 15 6 3.3233 7.3274 -0.5184 16 6 2.6678 8.2134 -1.5797 17 6 3.3714 8.0061 -2.9225 18 6 1.1905 7.8390 -1.7148 19 6 2.7838 9.6587 -1.1690 20 1 3.1979 9.9146 -0.2049 21 6 2.3612 10.6543 -2.0241 22 7 2.7936 11.8860 -1.8641 23 14 1.1742 10.2539 -3.4098 24 1 -0.2177 10.2812 -2.8929 25 1 1.3200 11.2596 -4.4926 26 1 1.4767 8.9023 -3.9456 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 0.2151 2.3264 -0.0027 31 1 1.3437 4.5071 0.0012 32 1 4.0150 0.3808 0.0005 33 1 5.9293 2.3061 -1.0112 34 1 5.9382 1.7694 0.6834 35 1 7.1788 3.9410 0.2596 36 1 5.8843 4.0593 1.4794 37 1 5.4663 4.7069 -1.4746 38 1 5.8872 5.9359 -0.2540 39 1 2.2427 5.6396 -0.9892 40 1 2.8221 7.4751 0.4383 41 1 4.3758 7.5941 -0.4220 42 1 3.1758 6.9963 -3.2831 43 1 2.9945 8.7295 -3.6455 44 1 4.4449 8.1450 -2.7953 45 1 0.6892 7.9867 -0.7582 46 1 0.7233 8.4705 -2.4706 47 1 1.1063 6.7936 -2.0116 48 1 2.4960 12.5865 -2.4654 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459736244.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:28:12 Heat of formation + Delta-G solvation = -7.203994 kcal Electronic energy + Delta-G solvation = -25470.459362 eV Core-core repulsion = 22104.597967 eV Total energy + Delta-G solvation = -3365.861395 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.61335 -38.92187 -37.00309 -35.34675 -34.05544 -31.80189 -30.63139 -29.72931 -28.39957 -26.98677 -26.14402 -25.13257 -24.34444 -23.25243 -22.37636 -21.36176 -19.46727 -18.71815 -17.83789 -16.45868 -16.24073 -15.95850 -15.88779 -15.46777 -14.98401 -14.53261 -14.32853 -14.07507 -13.58282 -13.35825 -13.21737 -12.95674 -12.81602 -12.70301 -12.49458 -12.31411 -12.08545 -12.06210 -11.94293 -11.73059 -11.26086 -11.13656 -10.86350 -10.83724 -10.55094 -10.35551 -10.19508 -10.02081 -9.94226 -9.73295 -9.01214 -8.83314 -8.53953 -8.27531 -8.26348 -7.71765 -6.08770 -4.00405 1.24374 1.36044 3.08783 3.33095 3.43067 3.45575 3.63397 4.46466 4.55671 4.62292 4.67773 4.77273 4.86705 4.90666 5.01623 5.07289 5.16191 5.20792 5.24356 5.24847 5.44363 5.49510 5.59851 5.72350 5.83306 5.89948 5.95301 5.99264 6.04846 6.12265 6.15227 6.26102 6.30748 6.39661 6.47079 6.55962 6.63404 6.64954 6.71172 6.80048 6.87399 6.99502 7.10960 7.25750 7.46174 7.55443 7.65413 7.87750 7.96219 8.57111 8.98800 9.60241 11.04662 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.018395 B = 0.003739 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.809912 B = 7486.886502 C = 8626.707512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.120 3.880 4 C -0.205 4.205 5 C -0.078 4.078 6 C -0.101 4.101 7 C -0.030 4.030 8 C -0.156 4.156 9 C -0.080 4.080 10 C -0.120 4.120 11 C -0.107 4.107 12 C 0.130 3.870 13 H 0.050 0.950 14 N -0.684 5.684 15 C 0.084 3.916 16 C 0.044 3.956 17 C -0.128 4.128 18 C -0.147 4.147 19 C -0.517 4.517 20 H 0.070 0.930 21 C 0.078 3.922 22 N -0.891 5.891 23 Si 0.871 3.129 24 H -0.288 1.288 25 H -0.304 1.304 26 H -0.240 1.240 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.097 0.903 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.127 0.873 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.336 0.664 40 H 0.019 0.981 41 H 0.066 0.934 42 H 0.033 0.967 43 H 0.043 0.957 44 H 0.040 0.960 45 H 0.043 0.957 46 H 0.040 0.960 47 H 0.031 0.969 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.040 -22.938 4.375 23.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.076 3.924 4 C -0.224 4.224 5 C -0.097 4.097 6 C -0.102 4.102 7 C -0.031 4.031 8 C -0.175 4.175 9 C -0.116 4.116 10 C -0.158 4.158 11 C -0.145 4.145 12 C 0.020 3.980 13 H 0.068 0.932 14 N -0.318 5.318 15 C -0.045 4.045 16 C 0.043 3.957 17 C -0.186 4.186 18 C -0.204 4.204 19 C -0.554 4.554 20 H 0.088 0.912 21 C -0.125 4.125 22 N -0.528 5.528 23 Si 0.703 3.297 24 H -0.215 1.215 25 H -0.233 1.233 26 H -0.166 1.166 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.116 0.884 30 H 0.144 0.856 31 H 0.142 0.858 32 H 0.145 0.855 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.157 0.843 40 H 0.038 0.962 41 H 0.085 0.915 42 H 0.052 0.948 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.058 0.942 47 H 0.050 0.950 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.550 -22.886 3.869 23.217 hybrid contribution -1.815 0.212 0.049 1.828 sum -1.265 -22.674 3.918 23.044 Atomic orbital electron populations 1.23028 0.78538 1.03704 1.01442 1.86036 1.21260 1.27108 1.89032 1.18868 0.92307 0.83997 0.97266 1.21107 0.99883 0.92260 1.09164 1.20943 0.94195 0.97178 0.97361 1.19675 0.92991 0.94830 1.02711 1.19374 0.95612 0.91171 0.96924 1.20343 0.91268 0.98013 1.07853 1.20496 0.90479 0.98430 1.02241 1.21571 0.99857 0.94163 1.00165 1.21552 0.93776 0.98672 1.00468 1.20262 0.94284 0.88658 0.94797 0.93233 1.60772 1.17651 1.03379 1.49966 1.22025 1.00634 0.85224 0.96576 1.18425 0.90416 0.94607 0.92257 1.22109 0.99772 0.98634 0.98042 1.22328 0.99982 0.98037 1.00097 1.20838 1.42486 0.87996 1.04129 0.91205 1.24934 0.95851 0.94861 0.96814 1.70026 1.41993 1.01799 1.39011 0.87571 0.81682 0.78191 0.82286 1.21525 1.23283 1.16573 0.92715 0.92629 0.88420 0.85599 0.85819 0.85520 0.90262 0.90848 0.91261 0.91827 0.90731 0.91303 0.84296 0.96236 0.91533 0.94768 0.93782 0.94113 0.93825 0.94182 0.95012 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.82 101.05 0.99 1.20 16 2 O -0.32 -3.57 10.50 -19.40 -0.20 -3.77 16 3 C 0.12 1.46 6.68 -39.32 -0.26 1.20 16 4 C -0.21 -2.43 9.04 -39.54 -0.36 -2.78 16 5 C -0.08 -1.01 8.83 -39.46 -0.35 -1.36 16 6 C -0.10 -1.36 5.56 -104.57 -0.58 -1.94 16 7 C -0.03 -0.37 5.74 -104.63 -0.60 -0.97 16 8 C -0.16 -1.85 9.55 -39.29 -0.38 -2.23 16 9 C -0.08 -0.79 5.67 -28.05 -0.16 -0.95 16 10 C -0.12 -1.24 5.98 -26.69 -0.16 -1.40 16 11 C -0.11 -1.39 5.40 -26.70 -0.14 -1.54 16 12 C 0.13 1.85 2.52 -69.02 -0.17 1.67 16 13 H 0.05 0.73 7.83 -51.93 -0.41 0.33 16 14 N -0.68 -11.31 5.57 -108.12 -0.60 -11.91 16 15 C 0.08 1.63 4.34 -3.83 -0.02 1.62 16 16 C 0.04 1.00 0.57 -155.66 -0.09 0.91 16 17 C -0.13 -2.87 7.54 37.16 0.28 -2.59 16 18 C -0.15 -3.12 7.51 37.15 0.28 -2.84 16 19 C -0.52 -14.22 8.60 -34.44 -0.30 -14.52 16 20 H 0.07 2.08 7.99 -52.49 -0.42 1.66 16 21 C 0.08 2.22 5.25 -17.82 -0.09 2.13 16 22 N -0.89 -27.19 13.96 55.43 0.77 -26.42 16 23 Si 0.87 21.69 22.95 -169.99 -3.90 17.78 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.30 -7.72 7.11 56.52 0.40 -7.31 16 26 H -0.24 -5.57 4.58 56.52 0.26 -5.32 16 27 H 0.05 0.36 7.67 -51.93 -0.40 -0.04 16 28 H 0.06 0.38 7.67 -51.93 -0.40 -0.02 16 29 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.13 1.22 6.33 -52.49 -0.33 0.89 16 31 H 0.12 1.55 6.55 -52.49 -0.34 1.21 16 32 H 0.13 1.30 8.05 -52.49 -0.42 0.88 16 33 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 34 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 37 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 38 H 0.07 0.95 7.63 -51.93 -0.40 0.55 16 39 H 0.34 5.38 4.33 -39.29 -0.17 5.21 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 1.34 7.51 -51.93 -0.39 0.95 16 42 H 0.03 0.70 7.84 -51.93 -0.41 0.29 16 43 H 0.04 1.04 3.84 -51.93 -0.20 0.84 16 44 H 0.04 0.90 8.13 -51.93 -0.42 0.48 16 45 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.04 0.90 2.74 -51.92 -0.14 0.76 16 47 H 0.03 0.58 6.70 -51.93 -0.35 0.23 16 48 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 354.49 15.07 5.34 5.34 Total: -1.00 -30.65 354.49 -8.55 -39.20 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -7.85 Total: 4.16 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: -2.10 Total: -24.38 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.17 Total: -38.33 kcal Atomic # 8 Polarization: -3.57 SS G_CDS: -0.20 Total: -3.77 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -3.90 Total: 17.78 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.65 -8.55 -39.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459736244.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.997 kcal (2) G-P(sol) polarization free energy of solvation -30.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds