Wall clock time and date at job start Tue Mar 31 2020 09:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35892 * 117.00106 * 2 1 4 4 C 1.38760 * 120.17542 * 359.97438 * 3 2 1 5 5 C 1.37834 * 119.71050 * 179.91750 * 4 3 2 6 6 C 1.38961 * 120.62675 * 0.02562 * 5 4 3 7 7 C 1.37713 * 119.77271 * 0.17283 * 6 5 4 8 8 C 1.38427 * 120.17217 * 179.97438 * 3 2 1 9 9 C 1.50633 * 122.57172 * 179.68658 * 7 6 5 10 10 C 1.52732 * 110.59489 * 17.53111 * 9 7 6 11 11 C 1.53338 * 108.36921 * 308.93464 * 10 9 7 12 12 C 1.50658 * 117.68601 * 180.22539 * 6 5 4 13 13 H 1.08995 * 109.21959 * 77.23647 * 12 6 5 14 14 N 1.46905 * 109.25258 * 317.79348 * 12 6 5 15 15 C 1.46891 * 110.99806 * 153.35584 * 14 12 6 16 16 C 1.53002 * 109.47093 * 174.45567 * 15 14 12 17 17 C 1.53004 * 109.47072 * 299.99669 * 16 15 14 18 18 C 1.52995 * 109.46914 * 59.99756 * 16 15 14 19 19 C 1.50705 * 109.47024 * 179.97438 * 16 15 14 20 20 H 1.08001 * 119.99991 * 354.65858 * 19 16 15 21 21 C 1.37880 * 119.99555 * 174.66238 * 19 16 15 22 22 N 1.31513 * 119.99803 * 199.57484 * 21 19 16 23 23 Si 1.86801 * 120.00211 * 19.57932 * 21 19 16 24 24 H 1.48502 * 109.47304 * 84.23783 * 23 21 19 25 25 H 1.48498 * 109.47026 * 204.23808 * 23 21 19 26 26 H 1.48504 * 109.47013 * 324.23736 * 23 21 19 27 27 H 1.08998 * 109.47422 * 300.00354 * 1 2 3 28 28 H 1.09007 * 109.46944 * 60.00119 * 1 2 3 29 29 H 1.08993 * 109.47575 * 179.97438 * 1 2 3 30 30 H 1.07990 * 120.14625 * 359.89480 * 4 3 2 31 31 H 1.07997 * 119.68756 * 180.02562 * 5 4 3 32 32 H 1.08000 * 119.74635 * 0.02562 * 8 3 2 33 33 H 1.09008 * 109.25155 * 257.24581 * 9 7 6 34 34 H 1.09000 * 109.22585 * 137.80303 * 9 7 6 35 35 H 1.09000 * 109.69006 * 189.21754 * 10 9 7 36 36 H 1.08995 * 109.68546 * 68.65098 * 10 9 7 37 37 H 1.09000 * 109.68182 * 310.22725 * 11 10 9 38 38 H 1.08994 * 109.68230 * 189.66526 * 11 10 9 39 39 H 1.00896 * 110.99481 * 29.39826 * 14 12 6 40 40 H 1.09005 * 109.47167 * 294.45137 * 15 14 12 41 41 H 1.08999 * 109.47536 * 54.45063 * 15 14 12 42 42 H 1.09000 * 109.46934 * 67.42838 * 17 16 15 43 43 H 1.09001 * 109.47248 * 187.42861 * 17 16 15 44 44 H 1.08996 * 109.47064 * 307.42984 * 17 16 15 45 45 H 1.09000 * 109.47802 * 60.00487 * 18 16 15 46 46 H 1.09011 * 109.47026 * 179.97438 * 18 16 15 47 47 H 1.08999 * 109.47208 * 299.99993 * 18 16 15 48 48 H 0.97001 * 120.00139 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2938 2.3769 -0.0005 5 6 1.9295 3.5998 0.0012 6 6 3.3170 3.6765 0.0029 7 6 4.0657 2.5206 -0.0007 8 6 3.4281 1.2874 0.0005 9 6 5.5720 2.5302 -0.0060 10 6 6.1021 3.8965 0.4239 11 6 5.4062 4.9719 -0.4190 12 6 3.9424 5.0471 0.0100 13 1 3.8834 5.4632 1.0157 14 7 3.2097 5.9186 -0.9183 15 6 3.3233 7.3274 -0.5184 16 6 2.6678 8.2134 -1.5797 17 6 3.3714 8.0061 -2.9225 18 6 1.1905 7.8390 -1.7148 19 6 2.7838 9.6587 -1.1690 20 1 3.1979 9.9146 -0.2049 21 6 2.3612 10.6543 -2.0241 22 7 2.7936 11.8860 -1.8641 23 14 1.1742 10.2539 -3.4098 24 1 -0.2177 10.2812 -2.8929 25 1 1.3200 11.2596 -4.4926 26 1 1.4767 8.9023 -3.9456 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 0.2151 2.3264 -0.0027 31 1 1.3437 4.5071 0.0012 32 1 4.0150 0.3808 0.0005 33 1 5.9293 2.3061 -1.0112 34 1 5.9382 1.7694 0.6834 35 1 7.1788 3.9410 0.2596 36 1 5.8843 4.0593 1.4794 37 1 5.4663 4.7069 -1.4746 38 1 5.8872 5.9359 -0.2540 39 1 2.2427 5.6396 -0.9892 40 1 2.8221 7.4751 0.4383 41 1 4.3758 7.5941 -0.4220 42 1 3.1758 6.9963 -3.2831 43 1 2.9945 8.7295 -3.6455 44 1 4.4449 8.1450 -2.7953 45 1 0.6892 7.9867 -0.7582 46 1 0.7233 8.4705 -2.4706 47 1 1.1063 6.7936 -2.0116 48 1 2.4960 12.5865 -2.4654 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459736244.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:28:11 Heat of formation + Delta-G solvation = -25.759001 kcal Electronic energy + Delta-G solvation = -25471.263968 eV Core-core repulsion = 22104.597967 eV Total energy + Delta-G solvation = -3366.666001 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.51708 -39.86654 -38.53680 -36.38822 -35.33992 -33.74629 -31.77959 -30.62929 -29.40281 -27.93383 -27.67604 -27.06397 -25.97100 -24.22589 -23.29184 -22.42075 -20.62342 -20.30369 -18.67744 -18.08301 -17.51662 -17.29440 -16.85847 -16.62886 -16.33377 -15.54115 -15.46271 -15.19673 -14.83448 -14.69446 -14.62402 -14.39510 -14.08452 -13.94196 -13.75830 -13.63627 -13.61528 -13.21854 -12.99353 -12.83757 -12.59656 -12.30394 -12.13391 -11.96364 -11.91059 -11.77868 -11.69181 -11.57323 -11.29863 -11.25210 -10.99517 -10.50026 -10.28048 -9.70937 -9.41526 -8.88269 -8.30457 -6.25299 0.35277 0.42791 1.35893 1.39473 1.49000 2.37109 2.37209 2.71214 3.05342 3.37814 3.70247 3.75870 3.88994 4.08011 4.21786 4.22758 4.26395 4.31742 4.39308 4.40639 4.42874 4.47989 4.60001 4.61189 4.61841 4.74021 4.85089 4.86229 4.89931 4.99492 5.03594 5.05417 5.07722 5.13254 5.15832 5.18494 5.22956 5.32476 5.37019 5.45899 5.49895 5.63134 5.71601 5.77870 5.82672 5.89924 6.21918 6.36919 6.45539 6.58852 6.80121 7.38433 8.86836 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.018395 B = 0.003739 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.809912 B = 7486.886502 C = 8626.707512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.333 6.333 3 C 0.116 3.884 4 C -0.209 4.209 5 C -0.090 4.090 6 C -0.120 4.120 7 C -0.032 4.032 8 C -0.164 4.164 9 C -0.078 4.078 10 C -0.113 4.113 11 C -0.106 4.106 12 C 0.132 3.868 13 H 0.040 0.960 14 N -0.680 5.680 15 C 0.099 3.901 16 C 0.039 3.961 17 C -0.122 4.122 18 C -0.145 4.145 19 C -0.518 4.518 20 H 0.028 0.972 21 C 0.022 3.978 22 N -0.943 5.943 23 Si 0.929 3.071 24 H -0.283 1.283 25 H -0.312 1.312 26 H -0.208 1.208 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.120 0.880 30 H 0.145 0.855 31 H 0.124 0.876 32 H 0.142 0.858 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.054 0.946 39 H 0.340 0.660 40 H 0.012 0.988 41 H 0.052 0.948 42 H 0.057 0.943 43 H 0.032 0.968 44 H 0.032 0.968 45 H 0.045 0.955 46 H 0.030 0.970 47 H 0.064 0.936 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.833 -26.313 3.637 26.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.247 6.247 3 C 0.070 3.930 4 C -0.227 4.227 5 C -0.108 4.108 6 C -0.120 4.120 7 C -0.033 4.033 8 C -0.183 4.183 9 C -0.114 4.114 10 C -0.151 4.151 11 C -0.144 4.144 12 C 0.023 3.977 13 H 0.058 0.942 14 N -0.314 5.314 15 C -0.030 4.030 16 C 0.038 3.962 17 C -0.180 4.180 18 C -0.202 4.202 19 C -0.557 4.557 20 H 0.047 0.953 21 C -0.176 4.176 22 N -0.582 5.582 23 Si 0.758 3.242 24 H -0.210 1.210 25 H -0.241 1.241 26 H -0.132 1.132 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.138 0.862 30 H 0.162 0.838 31 H 0.141 0.859 32 H 0.160 0.840 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.162 0.838 40 H 0.030 0.970 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.051 0.949 44 H 0.051 0.949 45 H 0.064 0.936 46 H 0.049 0.951 47 H 0.082 0.918 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.249 -26.303 3.139 26.491 hybrid contribution -1.541 1.204 0.390 1.994 sum -1.790 -25.099 3.528 25.409 Atomic orbital electron populations 1.23314 0.76668 1.05505 1.02069 1.86027 1.23245 1.26639 1.88796 1.19066 0.92696 0.84489 0.96707 1.21293 1.00934 0.91753 1.08725 1.21034 0.94184 0.97727 0.97881 1.19632 0.93412 0.94455 1.04550 1.19605 0.96750 0.90823 0.96128 1.20580 0.91598 0.98454 1.07625 1.20552 0.89078 0.98519 1.03293 1.21539 1.00616 0.93483 0.99478 1.21529 0.93234 0.99066 1.00558 1.20256 0.94749 0.88954 0.93757 0.94179 1.60715 1.18237 1.01814 1.50612 1.21674 0.99283 0.86850 0.95239 1.18416 0.92309 0.92129 0.93335 1.22021 0.99142 0.99535 0.97264 1.22237 0.98009 0.99808 1.00107 1.21178 1.41119 0.91011 1.02344 0.95335 1.25749 0.97393 0.94558 0.99863 1.70162 1.43995 1.03153 1.40891 0.86630 0.79230 0.79294 0.79059 1.21002 1.24125 1.13159 0.91966 0.92065 0.86179 0.83751 0.85864 0.84017 0.89427 0.88726 0.89487 0.91890 0.91460 0.92702 0.83772 0.97020 0.92905 0.92421 0.94916 0.94921 0.93627 0.95103 0.91752 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.82 113.37 1.11 1.34 16 2 O -0.33 -6.61 10.50 -92.34 -0.97 -7.58 16 3 C 0.12 2.55 6.68 22.44 0.15 2.70 16 4 C -0.21 -4.48 9.04 22.30 0.20 -4.27 16 5 C -0.09 -2.17 8.83 22.35 0.20 -1.98 16 6 C -0.12 -3.03 5.56 -19.83 -0.11 -3.14 16 7 C -0.03 -0.72 5.74 -19.87 -0.11 -0.83 16 8 C -0.16 -3.51 9.55 22.46 0.21 -3.29 16 9 C -0.08 -1.34 5.67 29.74 0.17 -1.17 16 10 C -0.11 -2.13 5.98 30.62 0.18 -1.95 16 11 C -0.11 -2.67 5.40 30.62 0.17 -2.51 16 12 C 0.13 3.67 2.52 44.06 0.11 3.78 16 13 H 0.04 1.19 7.83 -2.39 -0.02 1.17 16 14 N -0.68 -21.69 5.57 -496.00 -2.76 -24.45 16 15 C 0.10 3.86 4.34 86.31 0.37 4.23 16 16 C 0.04 1.75 0.57 -52.93 -0.03 1.72 16 17 C -0.12 -5.28 7.54 71.98 0.54 -4.74 16 18 C -0.14 -5.79 7.51 71.98 0.54 -5.25 16 19 C -0.52 -29.26 8.60 25.60 0.22 -29.04 16 20 H 0.03 1.79 7.99 -2.91 -0.02 1.77 16 21 C 0.02 1.28 5.25 84.66 0.44 1.73 16 22 N -0.94 -59.47 13.96 21.45 0.30 -59.17 16 23 Si 0.93 44.56 22.95 68.60 1.57 46.14 16 24 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 25 H -0.31 -15.29 7.11 99.48 0.71 -14.59 16 26 H -0.21 -8.87 4.58 99.48 0.46 -8.41 16 27 H 0.06 0.66 7.67 -2.39 -0.02 0.64 16 28 H 0.06 0.67 7.67 -2.38 -0.02 0.65 16 29 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.14 2.43 6.33 -2.92 -0.02 2.41 16 31 H 0.12 2.90 6.55 -2.91 -0.02 2.88 16 32 H 0.14 2.51 8.05 -2.91 -0.02 2.49 16 33 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.09 1.26 8.12 -2.39 -0.02 1.24 16 35 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 37 H 0.07 1.79 8.10 -2.39 -0.02 1.77 16 38 H 0.05 1.51 7.63 -2.39 -0.02 1.49 16 39 H 0.34 10.25 4.33 -89.70 -0.39 9.86 16 40 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 41 H 0.05 2.19 7.51 -2.39 -0.02 2.17 16 42 H 0.06 2.20 7.84 -2.39 -0.02 2.19 16 43 H 0.03 1.47 3.84 -2.39 -0.01 1.46 16 44 H 0.03 1.42 8.13 -2.39 -0.02 1.40 16 45 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.03 1.29 2.74 -2.38 -0.01 1.28 16 47 H 0.06 2.15 6.70 -2.39 -0.02 2.14 16 48 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -67.29 354.49 2.82 -64.46 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: 0.31 Total: 23.26 kcal Atomic # 6 Polarization: -47.05 SS G_CDS: 4.37 Total: -42.67 kcal Atomic # 7 Polarization: -81.16 SS G_CDS: -2.46 Total: -83.62 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -0.97 Total: -7.58 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.57 Total: 46.14 kcal Total: -67.29 2.82 -64.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459736244.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.705 kcal (2) G-P(sol) polarization free energy of solvation -67.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds