Wall clock time and date at job start Tue Mar 31 2020 08:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46511 * 2 1 4 4 C 1.53001 * 109.47346 * 119.99854 * 2 1 3 5 5 C 1.52998 * 109.46826 * 174.21994 * 4 2 1 6 6 N 1.46498 * 109.46835 * 174.10141 * 5 4 2 7 7 C 1.34781 * 119.99897 * 173.11689 * 6 5 4 8 8 O 1.21590 * 120.00270 * 359.97438 * 7 6 5 9 9 C 1.47644 * 119.99757 * 179.97438 * 7 6 5 10 10 C 1.40009 * 119.89730 * 0.24634 * 9 7 6 11 11 C 1.36318 * 120.10406 * 180.25754 * 10 9 7 12 12 C 1.40884 * 119.89247 * 359.47384 * 11 10 9 13 13 C 1.41111 * 120.10396 * 180.30100 * 12 11 10 14 14 H 1.08000 * 120.00418 * 149.75448 * 13 12 11 15 15 C 1.40232 * 119.99714 * 329.75416 * 13 12 11 16 16 N 1.30640 * 120.00016 * 350.11458 * 15 13 12 17 17 Si 1.86807 * 119.99797 * 170.11636 * 15 13 12 18 18 H 1.48501 * 109.47024 * 60.00065 * 17 15 13 19 19 H 1.48499 * 109.46873 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46901 * 299.99872 * 17 15 13 21 21 C 1.40884 * 119.79592 * 0.27466 * 12 11 10 22 22 C 1.36318 * 119.88833 * 0.02562 * 21 12 11 23 23 C 1.53003 * 109.46660 * 54.21913 * 4 2 1 24 24 C 1.53003 * 109.47116 * 61.10635 * 23 4 2 25 25 C 1.53001 * 109.46651 * 181.10271 * 23 4 2 26 26 H 1.08994 * 109.47295 * 59.82248 * 1 2 3 27 27 H 1.08998 * 109.46492 * 179.82726 * 1 2 3 28 28 H 1.09004 * 109.46801 * 299.82003 * 1 2 3 29 29 H 1.09000 * 109.47391 * 240.00619 * 2 1 3 30 30 H 1.09005 * 109.47013 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.47768 * 300.00193 * 3 2 1 32 32 H 1.09004 * 109.47487 * 60.00420 * 3 2 1 33 33 H 1.09000 * 109.47181 * 294.22084 * 4 2 1 34 34 H 1.08994 * 109.47534 * 54.09418 * 5 4 2 35 35 H 1.09009 * 109.47130 * 294.09449 * 5 4 2 36 36 H 0.96997 * 120.00085 * 353.10434 * 6 5 4 37 37 H 1.07996 * 119.95007 * 0.02918 * 10 9 7 38 38 H 1.08001 * 120.05200 * 179.74541 * 11 10 9 39 39 H 0.97002 * 119.99711 * 179.97438 * 16 15 13 40 40 H 1.07993 * 120.05661 * 180.02562 * 21 12 11 41 41 H 1.08001 * 119.94261 * 179.97438 * 22 21 12 42 42 H 1.08993 * 109.47631 * 301.10162 * 23 4 2 43 43 H 1.09003 * 109.47092 * 68.94873 * 24 23 4 44 44 H 1.08994 * 109.46916 * 188.95038 * 24 23 4 45 45 H 1.09004 * 109.46975 * 308.94689 * 24 23 4 46 46 H 1.08999 * 109.47447 * 53.30436 * 25 23 4 47 47 H 1.09004 * 109.47142 * 173.30674 * 25 23 4 48 48 H 1.09002 * 109.47459 * 293.30516 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5632 -0.8482 1.1786 6 7 4.0650 -1.4106 2.4348 7 6 5.3659 -1.7430 2.5521 8 8 6.1229 -1.5766 1.6153 9 6 5.8718 -2.3093 3.8183 10 6 4.9972 -2.5049 4.8940 11 6 5.4608 -3.0226 6.0668 12 6 6.8200 -3.3713 6.1917 13 6 7.3034 -3.9134 7.4015 14 1 8.1320 -4.6060 7.3900 15 6 6.7078 -3.5528 8.6188 16 7 5.8405 -2.5766 8.6577 17 14 7.1547 -4.4684 10.1846 18 1 8.6104 -4.3278 10.4419 19 1 6.3935 -3.8987 11.3254 20 1 6.8156 -5.9060 10.0312 21 6 7.6952 -3.1776 5.1047 22 6 7.2237 -2.6536 3.9380 23 6 1.4149 -2.1157 1.3240 24 6 1.8253 -2.9253 0.0923 25 6 1.9036 -2.8265 2.5876 26 1 -0.3633 0.5165 -0.8883 27 1 -0.3632 -1.0277 -0.0031 28 1 -0.3633 0.5111 0.8916 29 1 1.8934 -0.5137 -0.8900 30 1 3.1299 1.4427 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 1.7637 -0.1511 2.1362 34 1 4.0029 0.1364 1.0199 35 1 3.8351 -1.5050 0.3522 36 1 3.4611 -1.5436 3.1821 37 1 3.9544 -2.2418 4.7958 38 1 4.7862 -3.1692 6.8974 39 1 5.4283 -2.3275 9.4997 40 1 8.7378 -3.4438 5.1957 41 1 7.8938 -2.5043 3.1043 42 1 0.3291 -2.0259 1.3545 43 1 2.8905 -3.1511 0.1443 44 1 1.2577 -3.8553 0.0632 45 1 1.6202 -2.3461 -0.8081 46 1 1.7171 -2.1940 3.4555 47 1 1.3693 -3.7695 2.7037 48 1 2.9726 -3.0226 2.5039 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000469820573.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:58 Heat of formation + Delta-G solvation = -41.557778 kcal Electronic energy + Delta-G solvation = -25133.662580 eV Core-core repulsion = 21766.311493 eV Total energy + Delta-G solvation = -3367.351087 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 5.79 seconds Orbital eigenvalues (eV) -39.88459 -38.32285 -36.96234 -34.31270 -33.79788 -33.01973 -30.38065 -29.45263 -28.53716 -27.42629 -27.00307 -25.86398 -23.59781 -21.63975 -21.25367 -20.84745 -19.80613 -18.70865 -17.49546 -16.79993 -16.02355 -15.68837 -15.30944 -14.84049 -14.44623 -14.11901 -13.95164 -13.68469 -13.46503 -13.18002 -12.93771 -12.76386 -12.61167 -12.43480 -12.29003 -12.07460 -11.95844 -11.87399 -11.70633 -11.54618 -11.38697 -11.25557 -11.24339 -10.98492 -10.89930 -10.60465 -10.43484 -10.38034 -10.12670 -10.00245 -9.52336 -9.41339 -8.93658 -8.35970 -7.71545 -7.46443 -6.94843 -4.60136 2.23830 2.95728 2.96180 2.99136 3.02586 3.77134 3.85349 3.91458 4.55496 4.61593 4.63761 4.72994 4.92311 5.13674 5.21847 5.36195 5.43144 5.46926 5.54559 5.57422 5.60251 5.69742 5.70873 5.76641 5.86272 5.91247 5.93052 5.99191 6.03357 6.05437 6.09222 6.14055 6.25910 6.30369 6.31995 6.41518 6.49070 6.77489 6.86739 6.97371 7.08539 7.14329 7.45865 7.65315 7.79367 7.87186 8.09608 8.26960 8.42296 8.65727 8.76031 9.10596 9.97410 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.022924 B = 0.003083 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.156403 B = 9078.551636 C = 9558.032451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.152 4.152 4 C -0.092 4.092 5 C 0.124 3.876 6 N -0.741 5.741 7 C 0.567 3.433 8 O -0.576 6.576 9 C -0.277 4.277 10 C -0.067 4.067 11 C -0.169 4.169 12 C 0.130 3.870 13 C -0.448 4.448 14 H 0.083 0.917 15 C 0.073 3.927 16 N -0.784 5.784 17 Si 0.916 3.084 18 H -0.263 1.263 19 H -0.276 1.276 20 H -0.262 1.262 21 C -0.234 4.234 22 C -0.026 4.026 23 C -0.090 4.090 24 C -0.152 4.152 25 C -0.175 4.175 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.402 0.598 37 H 0.088 0.912 38 H 0.121 0.879 39 H 0.285 0.715 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.050 0.950 45 H 0.056 0.944 46 H 0.053 0.947 47 H 0.053 0.947 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.601 2.806 -9.328 15.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 C -0.209 4.209 4 C -0.111 4.111 5 C 0.000 4.000 6 N -0.397 5.397 7 C 0.361 3.639 8 O -0.458 6.458 9 C -0.281 4.281 10 C -0.086 4.086 11 C -0.188 4.188 12 C 0.127 3.873 13 C -0.477 4.477 14 H 0.101 0.899 15 C -0.147 4.147 16 N -0.408 5.408 17 Si 0.740 3.260 18 H -0.188 1.188 19 H -0.201 1.201 20 H -0.186 1.186 21 C -0.253 4.253 22 C -0.045 4.045 23 C -0.108 4.108 24 C -0.209 4.209 25 C -0.232 4.232 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.241 0.759 37 H 0.106 0.894 38 H 0.139 0.861 39 H 0.096 0.904 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.233 3.078 -9.813 15.229 hybrid contribution -0.201 -0.261 1.208 1.252 sum -11.434 2.817 -8.604 14.584 Atomic orbital electron populations 1.21902 0.95193 1.01915 1.01536 1.21092 0.95723 0.96014 0.97964 1.21930 1.01581 0.95839 1.01578 1.21523 0.94591 0.96278 0.98699 1.21341 0.92301 0.98644 0.87738 1.46497 1.10649 1.66668 1.15928 1.18619 0.80791 0.76389 0.88096 1.90629 1.56691 1.56984 1.41526 1.18974 0.95612 1.19329 0.94205 1.20497 0.96378 0.98193 0.93536 1.21011 0.96006 1.05374 0.96441 1.17796 0.91087 0.86650 0.91790 1.19772 1.14435 1.22956 0.90514 0.89917 1.26048 0.93313 0.93815 1.01523 1.69698 1.20857 1.21173 1.29093 0.86229 0.79827 0.80538 0.79423 1.18759 1.20123 1.18618 1.20791 0.98431 1.10725 0.95380 1.20378 0.93512 0.94383 0.96242 1.21164 0.99844 0.94085 0.95708 1.21962 1.02016 0.99504 0.97437 1.22452 1.04001 1.00137 0.96655 0.92938 0.92179 0.92740 0.90703 0.92150 0.92845 0.92689 0.90707 0.92358 0.91390 0.75859 0.89431 0.86085 0.90367 0.88338 0.88084 0.91005 0.92120 0.93043 0.92485 0.92788 0.92835 0.89690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.68 37.16 0.32 -0.84 16 2 C -0.09 -0.81 2.03 -90.62 -0.18 -0.99 16 3 C -0.15 -1.37 8.97 37.16 0.33 -1.04 16 4 C -0.09 -0.98 1.52 -90.62 -0.14 -1.12 16 5 C 0.12 1.73 4.69 -4.04 -0.02 1.71 16 6 N -0.74 -12.31 3.41 -61.31 -0.21 -12.52 16 7 C 0.57 12.04 7.76 -12.42 -0.10 11.95 16 8 O -0.58 -13.77 16.30 5.29 0.09 -13.68 16 9 C -0.28 -6.31 5.89 -104.73 -0.62 -6.93 16 10 C -0.07 -1.47 9.47 -39.61 -0.38 -1.85 16 11 C -0.17 -4.13 8.59 -39.27 -0.34 -4.46 16 12 C 0.13 3.31 5.54 -106.81 -0.59 2.72 16 13 C -0.45 -11.21 9.05 -37.74 -0.34 -11.55 16 14 H 0.08 1.97 7.87 -52.49 -0.41 1.56 16 15 C 0.07 1.71 5.26 -17.31 -0.09 1.62 16 16 N -0.78 -18.96 10.88 55.56 0.60 -18.35 16 17 Si 0.92 17.51 29.57 -169.99 -5.03 12.48 16 18 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 19 H -0.28 -5.15 7.11 56.52 0.40 -4.74 16 20 H -0.26 -4.96 7.11 56.52 0.40 -4.55 16 21 C -0.23 -5.67 9.73 -39.27 -0.38 -6.06 16 22 C -0.03 -0.61 9.52 -39.61 -0.38 -0.99 16 23 C -0.09 -0.93 2.26 -90.62 -0.21 -1.13 16 24 C -0.15 -1.59 8.44 37.16 0.31 -1.27 16 25 C -0.18 -2.09 7.54 37.16 0.28 -1.81 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.46 6.32 -51.93 -0.33 0.13 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.69 6.57 -51.93 -0.34 0.35 16 30 H 0.06 0.60 6.47 -51.93 -0.34 0.27 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.85 6.34 -51.93 -0.33 0.52 16 35 H 0.07 1.01 6.27 -51.92 -0.33 0.69 16 36 H 0.40 6.12 3.55 -40.82 -0.15 5.97 16 37 H 0.09 1.65 6.37 -52.49 -0.33 1.31 16 38 H 0.12 3.00 6.29 -52.49 -0.33 2.67 16 39 H 0.29 6.26 8.29 -40.82 -0.34 5.92 16 40 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 41 H 0.10 2.32 7.63 -52.49 -0.40 1.92 16 42 H 0.07 0.67 6.27 -51.93 -0.33 0.34 16 43 H 0.06 0.75 6.74 -51.93 -0.35 0.40 16 44 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.53 6.16 -51.93 -0.32 0.21 16 46 H 0.05 0.61 7.48 -51.93 -0.39 0.22 16 47 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.08 1.22 5.47 -51.93 -0.28 0.93 16 LS Contribution 365.58 15.07 5.51 5.51 Total: -1.00 -27.63 365.58 -9.01 -36.64 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -7.47 Total: 11.97 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: -2.51 Total: -22.05 kcal Atomic # 7 Polarization: -31.27 SS G_CDS: 0.40 Total: -30.87 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: 0.09 Total: -13.68 kcal Atomic # 14 Polarization: 17.51 SS G_CDS: -5.03 Total: 12.48 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -27.63 -9.01 -36.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000469820573.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.918 kcal (2) G-P(sol) polarization free energy of solvation -27.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.79 seconds