Wall clock time and date at job start Tue Mar 31 2020 08:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46511 * 2 1 4 4 C 1.53001 * 109.47346 * 119.99854 * 2 1 3 5 5 C 1.52998 * 109.46826 * 174.21994 * 4 2 1 6 6 N 1.46498 * 109.46835 * 174.10141 * 5 4 2 7 7 C 1.34781 * 119.99897 * 173.11689 * 6 5 4 8 8 O 1.21590 * 120.00270 * 359.97438 * 7 6 5 9 9 C 1.47644 * 119.99757 * 179.97438 * 7 6 5 10 10 C 1.40009 * 119.89730 * 0.24634 * 9 7 6 11 11 C 1.36318 * 120.10406 * 180.25754 * 10 9 7 12 12 C 1.40884 * 119.89247 * 359.47384 * 11 10 9 13 13 C 1.41111 * 120.10396 * 180.30100 * 12 11 10 14 14 H 1.08000 * 120.00418 * 149.75448 * 13 12 11 15 15 C 1.40232 * 119.99714 * 329.75416 * 13 12 11 16 16 N 1.30640 * 120.00016 * 350.11458 * 15 13 12 17 17 Si 1.86807 * 119.99797 * 170.11636 * 15 13 12 18 18 H 1.48501 * 109.47024 * 60.00065 * 17 15 13 19 19 H 1.48499 * 109.46873 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46901 * 299.99872 * 17 15 13 21 21 C 1.40884 * 119.79592 * 0.27466 * 12 11 10 22 22 C 1.36318 * 119.88833 * 0.02562 * 21 12 11 23 23 C 1.53003 * 109.46660 * 54.21913 * 4 2 1 24 24 C 1.53003 * 109.47116 * 61.10635 * 23 4 2 25 25 C 1.53001 * 109.46651 * 181.10271 * 23 4 2 26 26 H 1.08994 * 109.47295 * 59.82248 * 1 2 3 27 27 H 1.08998 * 109.46492 * 179.82726 * 1 2 3 28 28 H 1.09004 * 109.46801 * 299.82003 * 1 2 3 29 29 H 1.09000 * 109.47391 * 240.00619 * 2 1 3 30 30 H 1.09005 * 109.47013 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.47768 * 300.00193 * 3 2 1 32 32 H 1.09004 * 109.47487 * 60.00420 * 3 2 1 33 33 H 1.09000 * 109.47181 * 294.22084 * 4 2 1 34 34 H 1.08994 * 109.47534 * 54.09418 * 5 4 2 35 35 H 1.09009 * 109.47130 * 294.09449 * 5 4 2 36 36 H 0.96997 * 120.00085 * 353.10434 * 6 5 4 37 37 H 1.07996 * 119.95007 * 0.02918 * 10 9 7 38 38 H 1.08001 * 120.05200 * 179.74541 * 11 10 9 39 39 H 0.97002 * 119.99711 * 179.97438 * 16 15 13 40 40 H 1.07993 * 120.05661 * 180.02562 * 21 12 11 41 41 H 1.08001 * 119.94261 * 179.97438 * 22 21 12 42 42 H 1.08993 * 109.47631 * 301.10162 * 23 4 2 43 43 H 1.09003 * 109.47092 * 68.94873 * 24 23 4 44 44 H 1.08994 * 109.46916 * 188.95038 * 24 23 4 45 45 H 1.09004 * 109.46975 * 308.94689 * 24 23 4 46 46 H 1.08999 * 109.47447 * 53.30436 * 25 23 4 47 47 H 1.09004 * 109.47142 * 173.30674 * 25 23 4 48 48 H 1.09002 * 109.47459 * 293.30516 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5632 -0.8482 1.1786 6 7 4.0650 -1.4106 2.4348 7 6 5.3659 -1.7430 2.5521 8 8 6.1229 -1.5766 1.6153 9 6 5.8718 -2.3093 3.8183 10 6 4.9972 -2.5049 4.8940 11 6 5.4608 -3.0226 6.0668 12 6 6.8200 -3.3713 6.1917 13 6 7.3034 -3.9134 7.4015 14 1 8.1320 -4.6060 7.3900 15 6 6.7078 -3.5528 8.6188 16 7 5.8405 -2.5766 8.6577 17 14 7.1547 -4.4684 10.1846 18 1 8.6104 -4.3278 10.4419 19 1 6.3935 -3.8987 11.3254 20 1 6.8156 -5.9060 10.0312 21 6 7.6952 -3.1776 5.1047 22 6 7.2237 -2.6536 3.9380 23 6 1.4149 -2.1157 1.3240 24 6 1.8253 -2.9253 0.0923 25 6 1.9036 -2.8265 2.5876 26 1 -0.3633 0.5165 -0.8883 27 1 -0.3632 -1.0277 -0.0031 28 1 -0.3633 0.5111 0.8916 29 1 1.8934 -0.5137 -0.8900 30 1 3.1299 1.4427 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 1.7637 -0.1511 2.1362 34 1 4.0029 0.1364 1.0199 35 1 3.8351 -1.5050 0.3522 36 1 3.4611 -1.5436 3.1821 37 1 3.9544 -2.2418 4.7958 38 1 4.7862 -3.1692 6.8974 39 1 5.4283 -2.3275 9.4997 40 1 8.7378 -3.4438 5.1957 41 1 7.8938 -2.5043 3.1043 42 1 0.3291 -2.0259 1.3545 43 1 2.8905 -3.1511 0.1443 44 1 1.2577 -3.8553 0.0632 45 1 1.6202 -2.3461 -0.8081 46 1 1.7171 -2.1940 3.4555 47 1 1.3693 -3.7695 2.7037 48 1 2.9726 -3.0226 2.5039 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000469820573.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:54 Heat of formation + Delta-G solvation = -53.564492 kcal Electronic energy + Delta-G solvation = -25134.183230 eV Core-core repulsion = 21766.311493 eV Total energy + Delta-G solvation = -3367.871737 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.22107 -39.71053 -38.68323 -35.63828 -35.44414 -34.10886 -32.11981 -31.31699 -29.71505 -28.28214 -27.82260 -27.51378 -24.85155 -23.28563 -22.76611 -21.96687 -21.33641 -19.82533 -19.33715 -18.21195 -17.31783 -17.16271 -16.82349 -15.83746 -15.77679 -15.54470 -15.36450 -15.05673 -14.83130 -14.62546 -14.36053 -13.86906 -13.78955 -13.66457 -13.48780 -13.36591 -13.28025 -13.00274 -12.93981 -12.83420 -12.63106 -12.58876 -12.36427 -12.30925 -12.05719 -11.76083 -11.71228 -11.38386 -11.31822 -11.22022 -11.15370 -11.00589 -10.66201 -9.82278 -9.57829 -9.32008 -8.72249 -6.49425 0.43027 1.13005 1.40173 1.44837 1.52185 2.14119 2.19944 2.44528 2.81672 3.66944 3.70422 3.74799 3.86817 4.17087 4.26896 4.27704 4.32686 4.43187 4.43633 4.47064 4.51775 4.67676 4.73915 4.80926 4.84506 4.90980 4.95122 4.98439 5.04750 5.05608 5.08466 5.12308 5.14781 5.19620 5.25916 5.29630 5.34809 5.39269 5.47290 5.52716 5.59159 5.63226 5.66812 5.81040 5.93908 5.99546 6.23718 6.54963 6.71891 6.79045 6.88616 7.45370 8.22628 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.022924 B = 0.003083 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.156403 B = 9078.551636 C = 9558.032451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.152 4.152 4 C -0.083 4.083 5 C 0.122 3.878 6 N -0.720 5.720 7 C 0.565 3.435 8 O -0.607 6.607 9 C -0.285 4.285 10 C -0.056 4.056 11 C -0.187 4.187 12 C 0.103 3.897 13 C -0.480 4.480 14 H 0.084 0.916 15 C 0.036 3.964 16 N -0.810 5.810 17 Si 0.989 3.011 18 H -0.261 1.261 19 H -0.265 1.265 20 H -0.258 1.258 21 C -0.247 4.247 22 C -0.037 4.037 23 C -0.085 4.085 24 C -0.150 4.150 25 C -0.177 4.177 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.045 0.955 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.410 0.590 37 H 0.120 0.880 38 H 0.115 0.885 39 H 0.295 0.705 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.094 0.906 43 H 0.034 0.966 44 H 0.059 0.941 45 H 0.069 0.931 46 H 0.060 0.940 47 H 0.059 0.941 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.798 3.065 -9.083 16.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.104 4.104 3 C -0.210 4.210 4 C -0.102 4.102 5 C -0.001 4.001 6 N -0.376 5.376 7 C 0.358 3.642 8 O -0.492 6.492 9 C -0.290 4.290 10 C -0.075 4.075 11 C -0.206 4.206 12 C 0.100 3.900 13 C -0.508 4.508 14 H 0.102 0.898 15 C -0.182 4.182 16 N -0.434 5.434 17 Si 0.809 3.191 18 H -0.185 1.185 19 H -0.189 1.189 20 H -0.182 1.182 21 C -0.266 4.266 22 C -0.056 4.056 23 C -0.103 4.103 24 C -0.207 4.207 25 C -0.235 4.235 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.251 0.749 37 H 0.138 0.862 38 H 0.133 0.867 39 H 0.106 0.894 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.112 0.888 43 H 0.053 0.947 44 H 0.078 0.922 45 H 0.088 0.912 46 H 0.079 0.921 47 H 0.079 0.921 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.472 3.352 -9.580 16.867 hybrid contribution 0.444 -0.295 1.037 1.166 sum -13.028 3.057 -8.543 15.877 Atomic orbital electron populations 1.21875 0.93647 1.02462 1.02210 1.21074 0.96877 0.95654 0.96839 1.21931 1.00636 0.96059 1.02337 1.21496 0.91738 0.96991 0.99979 1.21527 0.94819 0.97777 0.85999 1.46388 1.09035 1.64982 1.17178 1.18452 0.82085 0.76509 0.87113 1.90608 1.57895 1.58483 1.42238 1.19259 0.95536 1.18916 0.95243 1.20710 0.97818 0.96652 0.92337 1.21033 0.95690 1.06776 0.97124 1.18140 0.91889 0.87451 0.92502 1.20045 1.15443 1.23874 0.91419 0.89808 1.26881 0.92846 0.94193 1.04263 1.69731 1.21307 1.21861 1.30523 0.85137 0.79563 0.79137 0.75262 1.18512 1.18898 1.18190 1.20930 0.98849 1.11294 0.95576 1.20521 0.94321 0.94615 0.96157 1.21170 1.00976 0.93399 0.94805 1.21942 1.00432 1.00234 0.98128 1.22439 1.02227 1.00976 0.97840 0.91967 0.91671 0.92448 0.90766 0.93625 0.91612 0.92465 0.90171 0.92825 0.92307 0.74883 0.86215 0.86739 0.89435 0.87707 0.87943 0.88801 0.94657 0.92214 0.91182 0.92086 0.92148 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.68 71.98 0.62 -1.16 16 2 C -0.09 -1.35 2.03 -10.79 -0.02 -1.37 16 3 C -0.15 -2.46 8.97 71.98 0.65 -1.82 16 4 C -0.08 -1.61 1.52 -10.79 -0.02 -1.62 16 5 C 0.12 3.33 4.69 86.38 0.41 3.74 16 6 N -0.72 -23.55 3.41 -466.15 -1.59 -25.14 16 7 C 0.57 24.19 7.76 86.73 0.67 24.87 16 8 O -0.61 -29.53 16.30 -4.00 -0.07 -29.59 16 9 C -0.29 -13.17 5.89 -19.93 -0.12 -13.28 16 10 C -0.06 -2.48 9.47 22.25 0.21 -2.27 16 11 C -0.19 -9.27 8.59 22.47 0.19 -9.07 16 12 C 0.10 5.40 5.54 -21.28 -0.12 5.28 16 13 C -0.48 -24.45 9.05 23.46 0.21 -24.24 16 14 H 0.08 4.09 7.87 -2.91 -0.02 4.06 16 15 C 0.04 1.67 5.26 85.35 0.45 2.11 16 16 N -0.81 -39.16 10.88 21.87 0.24 -38.92 16 17 Si 0.99 35.33 29.57 68.60 2.03 37.36 16 18 H -0.26 -9.16 7.11 99.48 0.71 -8.46 16 19 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 20 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 21 C -0.25 -12.38 9.73 22.47 0.22 -12.16 16 22 C -0.04 -1.80 9.52 22.25 0.21 -1.58 16 23 C -0.09 -1.57 2.26 -10.79 -0.02 -1.59 16 24 C -0.15 -2.88 8.44 71.98 0.61 -2.27 16 25 C -0.18 -3.91 7.54 71.98 0.54 -3.37 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 0.75 6.32 -2.39 -0.02 0.73 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 1.20 6.57 -2.39 -0.02 1.18 16 30 H 0.04 0.87 6.47 -2.38 -0.02 0.85 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.05 1.55 6.34 -2.39 -0.02 1.53 16 35 H 0.06 1.75 6.27 -2.38 -0.01 1.74 16 36 H 0.41 11.97 3.55 -92.71 -0.33 11.64 16 37 H 0.12 4.36 6.37 -2.91 -0.02 4.34 16 38 H 0.11 5.76 6.29 -2.91 -0.02 5.75 16 39 H 0.29 12.76 8.29 -92.71 -0.77 11.99 16 40 H 0.10 4.93 8.06 -2.91 -0.02 4.91 16 41 H 0.10 4.86 7.63 -2.91 -0.02 4.84 16 42 H 0.09 1.39 6.27 -2.39 -0.02 1.38 16 43 H 0.03 0.85 6.74 -2.39 -0.02 0.84 16 44 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.07 1.15 6.16 -2.38 -0.01 1.13 16 46 H 0.06 1.24 7.48 -2.39 -0.02 1.22 16 47 H 0.06 1.24 8.14 -2.38 -0.02 1.23 16 48 H 0.06 1.59 5.47 -2.39 -0.01 1.58 16 Total: -1.00 -60.42 365.58 5.94 -54.49 By element: Atomic # 1 Polarization: 40.98 SS G_CDS: 0.63 Total: 41.61 kcal Atomic # 6 Polarization: -44.50 SS G_CDS: 4.70 Total: -39.80 kcal Atomic # 7 Polarization: -62.71 SS G_CDS: -1.35 Total: -64.06 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -0.07 Total: -29.59 kcal Atomic # 14 Polarization: 35.33 SS G_CDS: 2.03 Total: 37.36 kcal Total: -60.42 5.94 -54.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000469820573.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.921 kcal (2) G-P(sol) polarization free energy of solvation -60.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds