Wall clock time and date at job start Tue Mar 31 2020 09:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47039 * 2 1 4 4 C 1.52997 * 109.47039 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47349 * 54.99850 * 4 3 2 6 6 C 1.52999 * 109.47154 * 175.00342 * 4 3 2 7 7 C 1.52999 * 109.47238 * 185.00016 * 6 4 3 8 8 N 1.46503 * 109.46956 * 294.99820 * 4 3 2 9 9 C 1.34779 * 119.99530 * 155.00013 * 8 4 3 10 10 O 1.21276 * 120.00591 * 0.02562 * 9 8 4 11 11 C 1.50709 * 119.99794 * 180.02562 * 9 8 4 12 12 C 1.52998 * 109.46911 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.46972 * 305.37269 * 12 11 9 14 14 C 1.50693 * 109.47495 * 65.37732 * 12 11 9 15 15 H 1.07996 * 120.00054 * 34.61535 * 14 12 11 16 16 C 1.37880 * 119.99837 * 214.62246 * 14 12 11 17 17 N 1.31516 * 120.00043 * 186.44542 * 16 14 12 18 18 Si 1.86796 * 120.00004 * 6.44270 * 16 14 12 19 19 H 1.48503 * 109.47217 * 85.01294 * 18 16 14 20 20 H 1.48505 * 109.46905 * 205.00914 * 18 16 14 21 21 H 1.48495 * 109.47400 * 325.00886 * 18 16 14 22 22 C 1.50699 * 109.46741 * 185.37676 * 12 11 9 23 23 C 1.38242 * 120.00072 * 296.35226 * 22 12 11 24 24 C 1.38235 * 119.99776 * 179.79136 * 23 22 12 25 25 C 1.38238 * 120.00185 * 0.43887 * 24 23 22 26 26 C 1.38232 * 119.99720 * 359.81729 * 25 24 23 27 27 C 1.38233 * 120.00396 * 359.97166 * 26 25 24 28 28 H 1.09002 * 109.47512 * 299.99933 * 1 2 3 29 29 H 1.09003 * 109.47575 * 59.99847 * 1 2 3 30 30 H 1.09004 * 109.47003 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47512 * 240.00067 * 2 1 3 32 32 H 1.08995 * 109.46976 * 120.00044 * 2 1 3 33 33 H 1.08999 * 109.46618 * 60.00137 * 3 2 1 34 34 H 1.08995 * 109.46867 * 300.00218 * 3 2 1 35 35 H 1.09003 * 109.46704 * 304.99997 * 6 4 3 36 36 H 1.08997 * 109.47264 * 64.99305 * 6 4 3 37 37 H 1.09002 * 109.47040 * 179.97438 * 7 6 4 38 38 H 1.09003 * 109.47258 * 299.99642 * 7 6 4 39 39 H 1.09003 * 109.46808 * 59.99878 * 7 6 4 40 40 H 0.96996 * 120.00572 * 335.00294 * 8 4 3 41 41 H 1.09003 * 109.46776 * 300.00372 * 11 9 8 42 42 H 1.08995 * 109.47071 * 60.00264 * 11 9 8 43 43 H 0.96996 * 120.00155 * 180.02562 * 17 16 14 44 44 H 1.07995 * 119.99616 * 0.02562 * 23 22 12 45 45 H 1.08000 * 119.99521 * 180.28176 * 24 23 22 46 46 H 1.07998 * 119.99361 * 179.83884 * 25 24 23 47 47 H 1.08005 * 119.99229 * 180.02562 * 26 25 24 48 48 H 1.08000 * 119.99887 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9329 0.8533 -0.8426 6 6 4.0799 2.8796 -0.1263 7 6 5.6047 2.8705 -0.2523 8 7 4.0588 0.8587 1.2509 9 6 5.2808 0.2921 1.2980 10 8 5.9759 0.2661 0.3046 11 6 5.7835 -0.3091 2.5854 12 6 7.1863 -0.8799 2.3680 13 1 7.1681 -1.5804 1.5331 14 6 8.1435 0.2428 2.0612 15 1 8.0133 1.2068 2.5303 16 6 9.1855 0.0392 1.1814 17 7 10.0934 0.9751 1.0096 18 14 9.3076 -1.5658 0.2336 19 1 8.4760 -1.4804 -0.9938 20 1 10.7228 -1.8115 -0.1435 21 1 8.8212 -2.6814 1.0845 22 6 7.6357 -1.5965 3.6152 23 6 7.8093 -0.8926 4.7923 24 6 8.2174 -1.5507 5.9374 25 6 8.4607 -2.9111 5.9032 26 6 8.2922 -3.6140 4.7249 27 6 7.8799 -2.9567 3.5809 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9563 -0.8899 35 1 3.6448 3.3433 -1.0116 36 1 3.7918 3.4461 0.7592 37 1 5.9679 3.8943 -0.3423 38 1 6.0397 2.4068 0.6330 39 1 5.8926 2.3040 -1.1380 40 1 3.5030 0.8798 2.0456 41 1 5.8202 0.4610 3.3559 42 1 5.1111 -1.1068 2.9007 43 1 10.8262 0.8320 0.3904 44 1 7.6224 0.1708 4.8181 45 1 8.3486 -1.0016 6.8580 46 1 8.7820 -3.4247 6.7973 47 1 8.4819 -4.6769 4.6984 48 1 7.7479 -3.5060 2.6604 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000475320824.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:10:37 Heat of formation + Delta-G solvation = -40.689050 kcal Electronic energy + Delta-G solvation = -25547.670110 eV Core-core repulsion = 22180.356693 eV Total energy + Delta-G solvation = -3367.313416 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 3.69 seconds Orbital eigenvalues (eV) -39.52199 -38.49053 -36.53252 -34.08675 -33.42812 -32.01225 -31.48696 -30.18434 -29.05603 -28.27247 -25.82213 -23.94807 -22.64027 -21.86815 -21.08156 -20.82272 -20.03785 -19.11565 -16.92768 -16.54397 -16.06376 -15.83385 -14.95584 -14.71578 -14.55858 -14.19974 -13.94841 -13.81388 -13.40095 -13.25805 -12.76641 -12.70650 -12.52958 -12.39683 -12.30688 -12.20812 -11.91054 -11.78927 -11.58831 -11.18225 -11.00526 -10.89846 -10.73346 -10.73072 -10.52031 -10.44064 -10.33372 -10.30522 -9.83303 -9.57929 -9.15168 -8.82758 -8.42868 -8.34405 -8.18246 -7.78909 -5.95295 -3.91400 2.12116 2.17286 3.45702 3.49676 3.54844 3.55919 3.76358 4.55224 4.61449 4.64225 4.90588 4.95473 5.32938 5.33676 5.40808 5.43025 5.53861 5.54848 5.58032 5.64141 5.71205 5.72312 5.77846 5.85145 5.94278 5.97679 6.03897 6.04409 6.11722 6.20017 6.22262 6.26817 6.32122 6.35966 6.46711 6.62869 6.67792 6.72841 6.86318 7.02111 7.07399 7.13485 7.16559 7.30048 7.60642 7.75281 7.85591 8.14164 8.56231 9.03774 9.11073 9.70455 11.17519 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.012865 B = 0.004822 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.884495 B = 5805.456091 C = 6903.059758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.125 4.125 4 C 0.146 3.854 5 H 0.084 0.916 6 C -0.130 4.130 7 C -0.146 4.146 8 N -0.741 5.741 9 C 0.513 3.487 10 O -0.496 6.496 11 C -0.119 4.119 12 C 0.057 3.943 13 H 0.049 0.951 14 C -0.484 4.484 15 H 0.070 0.930 16 C 0.087 3.913 17 N -0.899 5.899 18 Si 0.872 3.128 19 H -0.273 1.273 20 H -0.298 1.298 21 H -0.262 1.262 22 C -0.037 4.037 23 C -0.102 4.102 24 C -0.128 4.128 25 C -0.150 4.150 26 C -0.127 4.127 27 C -0.137 4.137 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.037 0.963 38 H 0.074 0.926 39 H 0.056 0.944 40 H 0.391 0.609 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.261 0.739 44 H 0.119 0.881 45 H 0.109 0.891 46 H 0.107 0.893 47 H 0.107 0.893 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.075 -2.012 3.124 16.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.163 4.163 4 C 0.041 3.959 5 H 0.102 0.898 6 C -0.169 4.169 7 C -0.203 4.203 8 N -0.396 5.396 9 C 0.300 3.700 10 O -0.368 6.368 11 C -0.159 4.159 12 C 0.037 3.963 13 H 0.067 0.933 14 C -0.521 4.521 15 H 0.088 0.912 16 C -0.115 4.115 17 N -0.536 5.536 18 Si 0.701 3.299 19 H -0.199 1.199 20 H -0.225 1.225 21 H -0.187 1.187 22 C -0.038 4.038 23 C -0.120 4.120 24 C -0.146 4.146 25 C -0.168 4.168 26 C -0.145 4.145 27 C -0.155 4.155 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.093 0.907 39 H 0.075 0.925 40 H 0.224 0.776 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.137 0.863 45 H 0.128 0.872 46 H 0.125 0.875 47 H 0.126 0.874 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -15.355 -1.984 2.257 15.646 hybrid contribution 0.078 -0.687 -0.168 0.711 sum -15.277 -2.670 2.089 15.649 Atomic orbital electron populations 1.21779 0.96138 1.01427 1.01539 1.21526 0.95314 0.96817 1.02589 1.21899 0.94709 0.97160 1.02517 1.20927 0.92263 0.94196 0.88542 0.89815 1.21955 0.97905 0.96126 1.00925 1.21806 0.93930 1.00237 1.04340 1.46200 1.18679 1.62148 1.12575 1.20721 0.80122 0.77773 0.91386 1.90743 1.54358 1.55364 1.36331 1.21681 0.99127 1.00118 0.94984 1.18113 0.91210 0.96249 0.90702 0.93334 1.20541 1.09756 0.96264 1.25549 0.91184 1.24859 0.94847 0.96016 0.95815 1.69897 1.13055 1.34182 1.36484 0.86946 0.76260 0.85151 0.81560 1.19855 1.22475 1.18693 1.20762 0.94627 0.92389 0.96033 1.20955 0.99280 0.99674 0.92055 1.21048 1.00860 0.94514 0.98161 1.20852 1.03765 0.94708 0.97508 1.20961 1.01110 0.98963 0.93429 1.21151 1.01869 0.94825 0.97624 0.92884 0.92949 0.92946 0.92011 0.91656 0.91687 0.90977 0.92278 0.92506 0.94365 0.90719 0.92486 0.77647 0.89972 0.91606 0.92935 0.86326 0.87246 0.87478 0.87439 0.87078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.84 16 2 C -0.12 -1.19 5.82 -26.73 -0.16 -1.35 16 3 C -0.12 -1.20 4.75 -26.73 -0.13 -1.33 16 4 C 0.15 1.92 2.26 -67.93 -0.15 1.76 16 5 H 0.08 1.31 7.58 -51.93 -0.39 0.91 16 6 C -0.13 -1.79 5.61 -26.73 -0.15 -1.94 16 7 C -0.15 -2.64 8.51 37.16 0.32 -2.33 16 8 N -0.74 -10.36 4.48 -53.81 -0.24 -10.60 16 9 C 0.51 9.57 6.15 -10.98 -0.07 9.50 16 10 O -0.50 -11.52 12.13 5.56 0.07 -11.46 16 11 C -0.12 -2.16 4.94 -27.88 -0.14 -2.30 16 12 C 0.06 1.27 1.28 -92.93 -0.12 1.15 16 13 H 0.05 1.17 4.78 -51.93 -0.25 0.92 16 14 C -0.48 -13.07 6.94 -34.44 -0.24 -13.30 16 15 H 0.07 2.05 8.06 -52.49 -0.42 1.63 16 16 C 0.09 2.53 5.47 -17.82 -0.10 2.43 16 17 N -0.90 -27.89 13.96 55.43 0.77 -27.12 16 18 Si 0.87 22.81 27.04 -169.99 -4.60 18.22 16 19 H -0.27 -7.32 7.11 56.52 0.40 -6.92 16 20 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 21 H -0.26 -6.37 5.15 56.52 0.29 -6.08 16 22 C -0.04 -0.78 4.77 -104.62 -0.50 -1.28 16 23 C -0.10 -1.98 8.87 -39.58 -0.35 -2.33 16 24 C -0.13 -2.19 10.05 -39.58 -0.40 -2.58 16 25 C -0.15 -2.46 10.05 -39.58 -0.40 -2.86 16 26 C -0.13 -2.19 10.05 -39.59 -0.40 -2.59 16 27 C -0.14 -2.70 9.13 -39.58 -0.36 -3.06 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.65 7.75 -51.93 -0.40 0.25 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.07 1.60 5.64 -51.93 -0.29 1.31 16 39 H 0.06 1.13 7.85 -51.93 -0.41 0.72 16 40 H 0.39 4.32 8.60 -40.82 -0.35 3.97 16 41 H 0.08 1.41 7.80 -51.93 -0.41 1.01 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 44 H 0.12 2.28 7.77 -52.49 -0.41 1.87 16 45 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 46 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 47 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 48 H 0.11 2.17 6.96 -52.49 -0.37 1.81 16 LS Contribution 378.22 15.07 5.70 5.70 Total: -1.00 -32.19 378.22 -9.70 -41.89 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -8.44 Total: 6.60 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: -2.97 Total: -23.23 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.53 Total: -37.73 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.07 Total: -11.46 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.60 Total: 18.22 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.19 -9.70 -41.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000475320824.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.204 kcal (2) G-P(sol) polarization free energy of solvation -32.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.70 seconds