Wall clock time and date at job start Tue Mar 31 2020 09:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47039 * 2 1 4 4 C 1.52997 * 109.47039 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47349 * 54.99850 * 4 3 2 6 6 C 1.52999 * 109.47154 * 175.00342 * 4 3 2 7 7 C 1.52999 * 109.47238 * 185.00016 * 6 4 3 8 8 N 1.46503 * 109.46956 * 294.99820 * 4 3 2 9 9 C 1.34779 * 119.99530 * 155.00013 * 8 4 3 10 10 O 1.21276 * 120.00591 * 0.02562 * 9 8 4 11 11 C 1.50709 * 119.99794 * 180.02562 * 9 8 4 12 12 C 1.52998 * 109.46911 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.46972 * 305.37269 * 12 11 9 14 14 C 1.50693 * 109.47495 * 65.37732 * 12 11 9 15 15 H 1.07996 * 120.00054 * 34.61535 * 14 12 11 16 16 C 1.37880 * 119.99837 * 214.62246 * 14 12 11 17 17 N 1.31516 * 120.00043 * 186.44542 * 16 14 12 18 18 Si 1.86796 * 120.00004 * 6.44270 * 16 14 12 19 19 H 1.48503 * 109.47217 * 85.01294 * 18 16 14 20 20 H 1.48505 * 109.46905 * 205.00914 * 18 16 14 21 21 H 1.48495 * 109.47400 * 325.00886 * 18 16 14 22 22 C 1.50699 * 109.46741 * 185.37676 * 12 11 9 23 23 C 1.38242 * 120.00072 * 296.35226 * 22 12 11 24 24 C 1.38235 * 119.99776 * 179.79136 * 23 22 12 25 25 C 1.38238 * 120.00185 * 0.43887 * 24 23 22 26 26 C 1.38232 * 119.99720 * 359.81729 * 25 24 23 27 27 C 1.38233 * 120.00396 * 359.97166 * 26 25 24 28 28 H 1.09002 * 109.47512 * 299.99933 * 1 2 3 29 29 H 1.09003 * 109.47575 * 59.99847 * 1 2 3 30 30 H 1.09004 * 109.47003 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47512 * 240.00067 * 2 1 3 32 32 H 1.08995 * 109.46976 * 120.00044 * 2 1 3 33 33 H 1.08999 * 109.46618 * 60.00137 * 3 2 1 34 34 H 1.08995 * 109.46867 * 300.00218 * 3 2 1 35 35 H 1.09003 * 109.46704 * 304.99997 * 6 4 3 36 36 H 1.08997 * 109.47264 * 64.99305 * 6 4 3 37 37 H 1.09002 * 109.47040 * 179.97438 * 7 6 4 38 38 H 1.09003 * 109.47258 * 299.99642 * 7 6 4 39 39 H 1.09003 * 109.46808 * 59.99878 * 7 6 4 40 40 H 0.96996 * 120.00572 * 335.00294 * 8 4 3 41 41 H 1.09003 * 109.46776 * 300.00372 * 11 9 8 42 42 H 1.08995 * 109.47071 * 60.00264 * 11 9 8 43 43 H 0.96996 * 120.00155 * 180.02562 * 17 16 14 44 44 H 1.07995 * 119.99616 * 0.02562 * 23 22 12 45 45 H 1.08000 * 119.99521 * 180.28176 * 24 23 22 46 46 H 1.07998 * 119.99361 * 179.83884 * 25 24 23 47 47 H 1.08005 * 119.99229 * 180.02562 * 26 25 24 48 48 H 1.08000 * 119.99887 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9329 0.8533 -0.8426 6 6 4.0799 2.8796 -0.1263 7 6 5.6047 2.8705 -0.2523 8 7 4.0588 0.8587 1.2509 9 6 5.2808 0.2921 1.2980 10 8 5.9759 0.2661 0.3046 11 6 5.7835 -0.3091 2.5854 12 6 7.1863 -0.8799 2.3680 13 1 7.1681 -1.5804 1.5331 14 6 8.1435 0.2428 2.0612 15 1 8.0133 1.2068 2.5303 16 6 9.1855 0.0392 1.1814 17 7 10.0934 0.9751 1.0096 18 14 9.3076 -1.5658 0.2336 19 1 8.4760 -1.4804 -0.9938 20 1 10.7228 -1.8115 -0.1435 21 1 8.8212 -2.6814 1.0845 22 6 7.6357 -1.5965 3.6152 23 6 7.8093 -0.8926 4.7923 24 6 8.2174 -1.5507 5.9374 25 6 8.4607 -2.9111 5.9032 26 6 8.2922 -3.6140 4.7249 27 6 7.8799 -2.9567 3.5809 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9563 -0.8899 35 1 3.6448 3.3433 -1.0116 36 1 3.7918 3.4461 0.7592 37 1 5.9679 3.8943 -0.3423 38 1 6.0397 2.4068 0.6330 39 1 5.8926 2.3040 -1.1380 40 1 3.5030 0.8798 2.0456 41 1 5.8202 0.4610 3.3559 42 1 5.1111 -1.1068 2.9007 43 1 10.8262 0.8320 0.3904 44 1 7.6224 0.1708 4.8181 45 1 8.3486 -1.0016 6.8580 46 1 8.7820 -3.4247 6.7973 47 1 8.4819 -4.6769 4.6984 48 1 7.7479 -3.5060 2.6604 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000475320824.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:10:33 Heat of formation + Delta-G solvation = -59.354884 kcal Electronic energy + Delta-G solvation = -25548.479521 eV Core-core repulsion = 22180.356693 eV Total energy + Delta-G solvation = -3368.122827 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -40.95203 -39.91310 -37.75131 -35.77189 -34.44677 -33.78398 -33.13311 -31.59476 -30.44261 -29.40023 -27.64506 -25.05768 -24.28830 -23.30193 -22.14264 -21.89364 -21.36829 -20.71680 -19.00045 -18.00510 -17.29820 -17.17482 -16.55683 -16.10898 -15.79835 -15.65965 -15.35318 -14.94094 -14.91382 -14.59020 -14.46257 -14.11646 -14.05394 -13.85876 -13.51458 -13.32196 -13.24590 -13.19139 -12.83952 -12.72423 -12.56235 -12.30946 -12.08735 -11.93518 -11.87073 -11.77826 -11.64341 -11.51465 -11.44990 -11.42672 -11.06047 -10.59999 -10.37072 -9.72419 -9.61144 -9.28620 -8.20314 -6.14862 0.69387 0.74602 1.30348 1.38434 1.40493 2.06603 2.42254 2.50921 3.09337 3.27668 3.70628 4.06684 4.12585 4.14915 4.19875 4.30424 4.32407 4.33947 4.40905 4.47228 4.50566 4.51793 4.65181 4.68722 4.83002 4.86529 4.87659 4.90285 4.92117 5.02584 5.06451 5.10929 5.17501 5.22743 5.28153 5.31687 5.38789 5.40701 5.42820 5.52033 5.57523 5.71003 5.77766 5.83859 5.85277 6.04428 6.35053 6.38498 6.83437 6.89720 7.48550 7.70781 8.96577 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.012865 B = 0.004822 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.884495 B = 5805.456091 C = 6903.059758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C -0.112 4.112 4 C 0.145 3.855 5 H 0.054 0.946 6 C -0.122 4.122 7 C -0.140 4.140 8 N -0.720 5.720 9 C 0.510 3.490 10 O -0.551 6.551 11 C -0.114 4.114 12 C 0.057 3.943 13 H 0.030 0.970 14 C -0.455 4.455 15 H 0.034 0.966 16 C 0.027 3.973 17 N -0.952 5.952 18 Si 0.919 3.081 19 H -0.289 1.289 20 H -0.301 1.301 21 H -0.233 1.233 22 C -0.062 4.062 23 C -0.119 4.119 24 C -0.125 4.125 25 C -0.141 4.141 26 C -0.125 4.125 27 C -0.154 4.154 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.041 0.959 38 H 0.036 0.964 39 H 0.028 0.972 40 H 0.409 0.591 41 H 0.092 0.908 42 H 0.100 0.900 43 H 0.256 0.744 44 H 0.109 0.891 45 H 0.139 0.861 46 H 0.146 0.854 47 H 0.139 0.861 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.722 -3.451 5.534 19.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.150 4.150 4 C 0.040 3.960 5 H 0.072 0.928 6 C -0.160 4.160 7 C -0.198 4.198 8 N -0.375 5.375 9 C 0.297 3.703 10 O -0.428 6.428 11 C -0.154 4.154 12 C 0.038 3.962 13 H 0.048 0.952 14 C -0.493 4.493 15 H 0.052 0.948 16 C -0.169 4.169 17 N -0.594 5.594 18 Si 0.747 3.253 19 H -0.216 1.216 20 H -0.229 1.229 21 H -0.156 1.156 22 C -0.062 4.062 23 C -0.137 4.137 24 C -0.143 4.143 25 C -0.159 4.159 26 C -0.142 4.142 27 C -0.172 4.172 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.047 0.953 40 H 0.246 0.754 41 H 0.110 0.890 42 H 0.118 0.882 43 H 0.065 0.935 44 H 0.127 0.873 45 H 0.157 0.843 46 H 0.164 0.836 47 H 0.157 0.843 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -18.075 -3.440 4.717 18.994 hybrid contribution 0.819 -0.221 -0.792 1.161 sum -17.255 -3.661 3.925 18.071 Atomic orbital electron populations 1.21738 0.94510 1.01844 1.02360 1.21516 0.96687 0.96472 1.01635 1.21829 0.91199 0.97693 1.04282 1.21010 0.94883 0.93191 0.86924 0.92753 1.21917 0.94240 0.96902 1.02973 1.21703 0.97563 0.99372 1.01122 1.45965 1.17256 1.60415 1.13856 1.20862 0.81003 0.77680 0.90751 1.90734 1.56227 1.57757 1.38043 1.21593 0.97413 1.01318 0.95116 1.17994 0.92447 0.94438 0.91312 0.95153 1.20722 1.09237 0.96193 1.23148 0.94756 1.25521 0.95317 0.98595 0.97452 1.70031 1.14479 1.36345 1.38516 0.86181 0.75524 0.83426 0.80156 1.21604 1.22851 1.15645 1.20516 0.96731 0.93308 0.95668 1.21001 1.00474 0.99437 0.92777 1.21396 0.99362 0.95287 0.98257 1.21328 1.01635 0.94365 0.98542 1.21326 0.99641 1.00593 0.92686 1.21249 1.02825 0.94426 0.98743 0.91806 0.92357 0.92824 0.93553 0.92181 0.89566 0.89460 0.89743 0.90671 0.93947 0.94502 0.95289 0.75448 0.89013 0.88180 0.93496 0.87259 0.84321 0.83611 0.84335 0.87507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 71.98 0.71 -1.21 16 2 C -0.13 -2.14 5.82 30.60 0.18 -1.96 16 3 C -0.11 -1.85 4.75 30.60 0.15 -1.71 16 4 C 0.14 3.69 2.26 44.99 0.10 3.79 16 5 H 0.05 1.75 7.58 -2.39 -0.02 1.73 16 6 C -0.12 -3.21 5.61 30.59 0.17 -3.04 16 7 C -0.14 -5.34 8.51 71.98 0.61 -4.72 16 8 N -0.72 -19.62 4.48 -442.53 -1.98 -21.61 16 9 C 0.51 19.43 6.15 87.66 0.54 19.97 16 10 O -0.55 -27.05 12.13 -3.02 -0.04 -27.09 16 11 C -0.11 -4.15 4.94 29.85 0.15 -4.00 16 12 C 0.06 2.63 1.28 -12.29 -0.02 2.62 16 13 H 0.03 1.49 4.78 -2.39 -0.01 1.48 16 14 C -0.46 -25.77 6.94 25.60 0.18 -25.59 16 15 H 0.03 2.14 8.06 -2.91 -0.02 2.12 16 16 C 0.03 1.67 5.47 84.65 0.46 2.13 16 17 N -0.95 -62.63 13.96 21.45 0.30 -62.33 16 18 Si 0.92 49.11 27.04 68.60 1.85 50.97 16 19 H -0.29 -16.06 7.11 99.48 0.71 -15.35 16 20 H -0.30 -16.05 7.11 99.48 0.71 -15.34 16 21 H -0.23 -11.19 5.15 99.48 0.51 -10.67 16 22 C -0.06 -2.54 4.77 -19.86 -0.09 -2.64 16 23 C -0.12 -4.50 8.87 22.27 0.20 -4.30 16 24 C -0.13 -3.88 10.05 22.27 0.22 -3.66 16 25 C -0.14 -3.98 10.05 22.27 0.22 -3.76 16 26 C -0.12 -3.85 10.05 22.27 0.22 -3.62 16 27 C -0.15 -5.82 9.13 22.27 0.20 -5.62 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.05 0.69 8.14 -2.38 -0.02 0.68 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.06 1.08 7.75 -2.39 -0.02 1.06 16 33 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.04 1.66 5.64 -2.39 -0.01 1.65 16 39 H 0.03 1.22 7.85 -2.39 -0.02 1.20 16 40 H 0.41 8.15 8.60 -92.71 -0.80 7.35 16 41 H 0.09 3.14 7.80 -2.39 -0.02 3.12 16 42 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 43 H 0.26 16.20 8.31 -92.71 -0.77 15.43 16 44 H 0.11 4.23 7.77 -2.91 -0.02 4.21 16 45 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 46 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 47 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 48 H 0.11 4.03 6.96 -2.91 -0.02 4.01 16 Total: -1.00 -76.64 378.22 4.27 -72.36 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: -0.07 Total: 25.03 kcal Atomic # 6 Polarization: -41.55 SS G_CDS: 4.21 Total: -37.34 kcal Atomic # 7 Polarization: -82.25 SS G_CDS: -1.68 Total: -83.94 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.04 Total: -27.09 kcal Atomic # 14 Polarization: 49.11 SS G_CDS: 1.85 Total: 50.97 kcal Total: -76.64 4.27 -72.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000475320824.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.009 kcal (2) G-P(sol) polarization free energy of solvation -76.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds