Wall clock time and date at job start Tue Mar 31 2020 09:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47197 * 2 1 4 4 C 1.52993 * 109.47371 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.47422 * 54.99894 * 4 3 2 6 6 C 1.53000 * 109.47221 * 174.99893 * 4 3 2 7 7 C 1.53004 * 109.47184 * 185.00129 * 6 4 3 8 8 N 1.46505 * 109.47246 * 295.00334 * 4 3 2 9 9 C 1.34777 * 120.00101 * 155.00422 * 8 4 3 10 10 O 1.21287 * 120.00093 * 359.97438 * 9 8 4 11 11 C 1.50695 * 119.99894 * 180.02562 * 9 8 4 12 12 C 1.53004 * 109.47201 * 179.97438 * 11 9 8 13 13 H 1.09007 * 109.46743 * 55.00023 * 12 11 9 14 14 C 1.50697 * 109.47091 * 295.00004 * 12 11 9 15 15 H 1.08000 * 119.99851 * 325.12114 * 14 12 11 16 16 C 1.37878 * 119.99863 * 145.12442 * 14 12 11 17 17 N 1.31517 * 119.99497 * 184.98572 * 16 14 12 18 18 Si 1.86798 * 120.00252 * 4.98874 * 16 14 12 19 19 H 1.48495 * 109.47318 * 84.72842 * 18 16 14 20 20 H 1.48502 * 109.46936 * 204.72783 * 18 16 14 21 21 H 1.48502 * 109.46834 * 324.72779 * 18 16 14 22 22 C 1.50698 * 109.47064 * 174.99375 * 12 11 9 23 23 C 1.38238 * 119.99623 * 64.69570 * 22 12 11 24 24 C 1.38232 * 119.99695 * 179.78427 * 23 22 12 25 25 C 1.38241 * 120.00154 * 0.43948 * 24 23 22 26 26 C 1.38239 * 119.99816 * 359.81684 * 25 24 23 27 27 C 1.38228 * 120.00058 * 359.96987 * 26 25 24 28 28 H 1.09004 * 109.47134 * 60.00493 * 1 2 3 29 29 H 1.09007 * 109.47019 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47483 * 299.99814 * 1 2 3 31 31 H 1.09003 * 109.47491 * 240.00189 * 2 1 3 32 32 H 1.09004 * 109.47134 * 119.99506 * 2 1 3 33 33 H 1.09003 * 109.46746 * 59.99733 * 3 2 1 34 34 H 1.09001 * 109.46917 * 300.00247 * 3 2 1 35 35 H 1.08998 * 109.47568 * 305.00367 * 6 4 3 36 36 H 1.08997 * 109.46985 * 65.00633 * 6 4 3 37 37 H 1.08997 * 109.46981 * 59.99859 * 7 6 4 38 38 H 1.08996 * 109.47174 * 180.02562 * 7 6 4 39 39 H 1.09001 * 109.46770 * 300.00121 * 7 6 4 40 40 H 0.96997 * 119.99672 * 334.99625 * 8 4 3 41 41 H 1.09000 * 109.46711 * 299.99392 * 11 9 8 42 42 H 1.08999 * 109.47405 * 59.98932 * 11 9 8 43 43 H 0.97003 * 119.99558 * 180.02562 * 17 16 14 44 44 H 1.07993 * 119.99950 * 359.97438 * 23 22 12 45 45 H 1.08002 * 120.00374 * 180.27485 * 24 23 22 46 46 H 1.07994 * 119.99935 * 179.83426 * 25 24 23 47 47 H 1.08000 * 120.00163 * 180.02562 * 26 25 24 48 48 H 1.07995 * 120.00319 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9337 0.8530 -0.8409 6 6 4.0800 2.8796 -0.1251 7 6 5.6049 2.8704 -0.2499 8 7 4.0578 0.8589 1.2527 9 6 5.2798 0.2925 1.3011 10 8 5.9755 0.2655 0.3079 11 6 5.7813 -0.3083 2.5889 12 6 7.1839 -0.8802 2.3727 13 1 7.8354 -0.1031 1.9728 14 6 7.1138 -2.0275 1.3982 15 1 6.2539 -2.6810 1.3944 16 6 8.1474 -2.2430 0.5115 17 7 8.0438 -3.1822 -0.4034 18 14 9.6948 -1.2013 0.6097 19 1 10.6192 -1.7816 1.6166 20 1 10.3605 -1.1774 -0.7176 21 1 9.3349 0.1833 1.0081 22 6 7.7347 -1.3702 3.6870 23 6 7.1288 -2.4280 4.3389 24 6 7.6367 -2.8804 5.5423 25 6 8.7450 -2.2692 6.0984 26 6 9.3476 -1.2080 5.4490 27 6 8.8424 -0.7584 4.2435 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.6457 3.3431 -1.0109 36 1 3.7913 3.4463 0.7601 37 1 5.8936 2.3036 -1.1350 38 1 5.9683 3.8942 -0.3390 39 1 6.0391 2.4069 0.6360 40 1 3.5013 0.8803 2.0469 41 1 5.8175 0.4620 3.3593 42 1 5.1086 -1.1059 2.9040 43 1 8.7712 -3.3340 -1.0270 44 1 6.2607 -2.9029 3.9065 45 1 7.1661 -3.7097 6.0495 46 1 9.1401 -2.6209 7.0399 47 1 10.2137 -0.7307 5.8832 48 1 9.3134 0.0704 3.7360 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000475320825.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:10:42 Heat of formation + Delta-G solvation = -39.877394 kcal Electronic energy + Delta-G solvation = -25514.736608 eV Core-core repulsion = 22147.458387 eV Total energy + Delta-G solvation = -3367.278220 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -39.50497 -38.51164 -36.50417 -34.08531 -33.39679 -32.04364 -31.52006 -30.20851 -29.07864 -28.28116 -25.82088 -23.99224 -22.67348 -21.87736 -21.06063 -20.84966 -20.03292 -19.11349 -16.92753 -16.55552 -16.03605 -15.84431 -14.97896 -14.67957 -14.55715 -14.22668 -13.96545 -13.85693 -13.41160 -13.15761 -12.93509 -12.69800 -12.54083 -12.38447 -12.31013 -12.18339 -11.96799 -11.81502 -11.61009 -11.25290 -11.08328 -10.97680 -10.77220 -10.65902 -10.51873 -10.49874 -10.45397 -10.31729 -9.82821 -9.57876 -9.04696 -8.84003 -8.45527 -8.34135 -8.22822 -7.80709 -5.95153 -3.91282 2.08660 2.14679 3.43636 3.47982 3.49035 3.58386 3.77671 4.52636 4.58899 4.67273 4.98992 5.00819 5.32027 5.34195 5.37484 5.43916 5.50376 5.51463 5.55398 5.65717 5.69135 5.76218 5.78409 5.80634 5.96935 6.00153 6.04559 6.07792 6.11500 6.14099 6.22332 6.24476 6.27165 6.34225 6.34812 6.46397 6.65025 6.71114 6.77851 6.84602 7.04246 7.09198 7.13816 7.27035 7.60111 7.73959 7.85067 8.16691 8.56525 9.03768 9.14427 9.69749 11.18173 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.013161 B = 0.004622 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.059601 B = 6057.160782 C = 6696.068730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.124 4.124 4 C 0.144 3.856 5 H 0.087 0.913 6 C -0.130 4.130 7 C -0.146 4.146 8 N -0.741 5.741 9 C 0.513 3.487 10 O -0.493 6.493 11 C -0.116 4.116 12 C 0.047 3.953 13 H 0.057 0.943 14 C -0.482 4.482 15 H 0.070 0.930 16 C 0.087 3.913 17 N -0.899 5.899 18 Si 0.870 3.130 19 H -0.278 1.278 20 H -0.292 1.292 21 H -0.261 1.261 22 C -0.039 4.039 23 C -0.102 4.102 24 C -0.126 4.126 25 C -0.150 4.150 26 C -0.124 4.124 27 C -0.141 4.141 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.038 0.962 39 H 0.061 0.939 40 H 0.390 0.610 41 H 0.065 0.935 42 H 0.081 0.919 43 H 0.261 0.739 44 H 0.120 0.880 45 H 0.110 0.890 46 H 0.108 0.892 47 H 0.108 0.892 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.497 9.500 6.870 15.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.161 4.161 4 C 0.039 3.961 5 H 0.105 0.895 6 C -0.169 4.169 7 C -0.204 4.204 8 N -0.396 5.396 9 C 0.300 3.700 10 O -0.365 6.365 11 C -0.157 4.157 12 C 0.028 3.972 13 H 0.075 0.925 14 C -0.519 4.519 15 H 0.088 0.912 16 C -0.115 4.115 17 N -0.537 5.537 18 Si 0.699 3.301 19 H -0.204 1.204 20 H -0.219 1.219 21 H -0.186 1.186 22 C -0.040 4.040 23 C -0.120 4.120 24 C -0.144 4.144 25 C -0.169 4.169 26 C -0.142 4.142 27 C -0.159 4.159 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.057 0.943 39 H 0.080 0.920 40 H 0.223 0.777 41 H 0.083 0.917 42 H 0.099 0.901 43 H 0.071 0.929 44 H 0.138 0.862 45 H 0.128 0.872 46 H 0.126 0.874 47 H 0.126 0.874 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.854 9.368 5.938 14.837 hybrid contribution 0.690 0.363 0.334 0.849 sum -9.164 9.731 6.272 14.765 Atomic orbital electron populations 1.21773 0.96190 1.01499 1.01354 1.21529 0.95235 0.96623 1.02965 1.21882 0.94577 0.97358 1.02332 1.20935 0.92512 0.93791 0.88844 0.89481 1.21936 0.97275 0.96569 1.01091 1.21816 0.94876 0.99940 1.03720 1.46190 1.18821 1.62118 1.12505 1.20699 0.80635 0.77299 0.91400 1.90749 1.55504 1.54179 1.36054 1.21638 1.00434 0.99680 0.93917 1.18297 0.91330 0.97626 0.89977 0.92468 1.20569 1.05559 1.11286 1.14513 0.91174 1.24851 0.97981 0.94417 0.94270 1.69889 1.32580 1.32948 1.18244 0.86969 0.83986 0.82085 0.77067 1.20359 1.21894 1.18637 1.20824 0.94029 0.93997 0.95112 1.20972 1.00533 0.96442 0.94033 1.21066 0.97033 0.99699 0.96638 1.20861 0.97764 0.98070 1.00158 1.20960 0.99618 0.97677 0.95989 1.21082 0.98076 1.00814 0.95958 0.93019 0.92854 0.93010 0.91762 0.91535 0.91837 0.91035 0.91992 0.92484 0.92034 0.94320 0.91967 0.77698 0.91657 0.90063 0.92920 0.86224 0.87180 0.87411 0.87359 0.87335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 37.16 0.37 -0.98 16 2 C -0.13 -1.36 5.82 -26.73 -0.16 -1.52 16 3 C -0.12 -1.25 4.75 -26.73 -0.13 -1.38 16 4 C 0.14 1.92 2.26 -67.93 -0.15 1.76 16 5 H 0.09 1.44 7.58 -51.93 -0.39 1.04 16 6 C -0.13 -1.63 5.61 -26.73 -0.15 -1.78 16 7 C -0.15 -2.28 8.52 37.16 0.32 -1.96 16 8 N -0.74 -10.53 4.48 -53.80 -0.24 -10.77 16 9 C 0.51 9.72 6.15 -10.99 -0.07 9.66 16 10 O -0.49 -11.64 12.12 5.55 0.07 -11.57 16 11 C -0.12 -2.14 4.96 -27.88 -0.14 -2.28 16 12 C 0.05 1.07 1.21 -92.92 -0.11 0.95 16 13 H 0.06 1.41 4.70 -51.93 -0.24 1.16 16 14 C -0.48 -13.17 6.87 -34.44 -0.24 -13.41 16 15 H 0.07 2.08 8.06 -52.49 -0.42 1.65 16 16 C 0.09 2.56 5.47 -17.82 -0.10 2.46 16 17 N -0.90 -28.17 13.96 55.43 0.77 -27.39 16 18 Si 0.87 22.88 27.15 -169.99 -4.62 18.26 16 19 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.29 -7.77 7.11 56.52 0.40 -7.36 16 21 H -0.26 -6.61 6.06 56.52 0.34 -6.27 16 22 C -0.04 -0.81 4.55 -104.62 -0.48 -1.29 16 23 C -0.10 -1.97 8.87 -39.58 -0.35 -2.32 16 24 C -0.13 -2.15 10.05 -39.58 -0.40 -2.55 16 25 C -0.15 -2.45 10.05 -39.58 -0.40 -2.85 16 26 C -0.12 -2.14 10.05 -39.58 -0.40 -2.54 16 27 C -0.14 -2.77 9.43 -39.58 -0.37 -3.14 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.77 7.75 -51.93 -0.40 0.37 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 1.08 7.85 -51.93 -0.41 0.67 16 38 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.06 1.11 5.65 -51.93 -0.29 0.81 16 40 H 0.39 4.40 8.60 -40.82 -0.35 4.05 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.08 1.41 7.86 -51.93 -0.41 1.00 16 43 H 0.26 7.80 8.31 -40.82 -0.34 7.47 16 44 H 0.12 2.29 7.80 -52.49 -0.41 1.88 16 45 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 46 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 47 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 48 H 0.11 2.07 7.95 -52.49 -0.42 1.65 16 LS Contribution 380.19 15.07 5.73 5.73 Total: -1.00 -32.59 380.19 -9.67 -42.26 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -8.44 Total: 6.65 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: -2.95 Total: -23.16 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.53 Total: -38.16 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.07 Total: -11.57 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -4.62 Total: 18.26 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.59 -9.67 -42.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000475320825.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.386 kcal (2) G-P(sol) polarization free energy of solvation -32.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds