Wall clock time and date at job start Tue Mar 31 2020 09:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47197 * 2 1 4 4 C 1.52993 * 109.47371 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.47422 * 54.99894 * 4 3 2 6 6 C 1.53000 * 109.47221 * 174.99893 * 4 3 2 7 7 C 1.53004 * 109.47184 * 185.00129 * 6 4 3 8 8 N 1.46505 * 109.47246 * 295.00334 * 4 3 2 9 9 C 1.34777 * 120.00101 * 155.00422 * 8 4 3 10 10 O 1.21287 * 120.00093 * 359.97438 * 9 8 4 11 11 C 1.50695 * 119.99894 * 180.02562 * 9 8 4 12 12 C 1.53004 * 109.47201 * 179.97438 * 11 9 8 13 13 H 1.09007 * 109.46743 * 55.00023 * 12 11 9 14 14 C 1.50697 * 109.47091 * 295.00004 * 12 11 9 15 15 H 1.08000 * 119.99851 * 325.12114 * 14 12 11 16 16 C 1.37878 * 119.99863 * 145.12442 * 14 12 11 17 17 N 1.31517 * 119.99497 * 184.98572 * 16 14 12 18 18 Si 1.86798 * 120.00252 * 4.98874 * 16 14 12 19 19 H 1.48495 * 109.47318 * 84.72842 * 18 16 14 20 20 H 1.48502 * 109.46936 * 204.72783 * 18 16 14 21 21 H 1.48502 * 109.46834 * 324.72779 * 18 16 14 22 22 C 1.50698 * 109.47064 * 174.99375 * 12 11 9 23 23 C 1.38238 * 119.99623 * 64.69570 * 22 12 11 24 24 C 1.38232 * 119.99695 * 179.78427 * 23 22 12 25 25 C 1.38241 * 120.00154 * 0.43948 * 24 23 22 26 26 C 1.38239 * 119.99816 * 359.81684 * 25 24 23 27 27 C 1.38228 * 120.00058 * 359.96987 * 26 25 24 28 28 H 1.09004 * 109.47134 * 60.00493 * 1 2 3 29 29 H 1.09007 * 109.47019 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47483 * 299.99814 * 1 2 3 31 31 H 1.09003 * 109.47491 * 240.00189 * 2 1 3 32 32 H 1.09004 * 109.47134 * 119.99506 * 2 1 3 33 33 H 1.09003 * 109.46746 * 59.99733 * 3 2 1 34 34 H 1.09001 * 109.46917 * 300.00247 * 3 2 1 35 35 H 1.08998 * 109.47568 * 305.00367 * 6 4 3 36 36 H 1.08997 * 109.46985 * 65.00633 * 6 4 3 37 37 H 1.08997 * 109.46981 * 59.99859 * 7 6 4 38 38 H 1.08996 * 109.47174 * 180.02562 * 7 6 4 39 39 H 1.09001 * 109.46770 * 300.00121 * 7 6 4 40 40 H 0.96997 * 119.99672 * 334.99625 * 8 4 3 41 41 H 1.09000 * 109.46711 * 299.99392 * 11 9 8 42 42 H 1.08999 * 109.47405 * 59.98932 * 11 9 8 43 43 H 0.97003 * 119.99558 * 180.02562 * 17 16 14 44 44 H 1.07993 * 119.99950 * 359.97438 * 23 22 12 45 45 H 1.08002 * 120.00374 * 180.27485 * 24 23 22 46 46 H 1.07994 * 119.99935 * 179.83426 * 25 24 23 47 47 H 1.08000 * 120.00163 * 180.02562 * 26 25 24 48 48 H 1.07995 * 120.00319 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9337 0.8530 -0.8409 6 6 4.0800 2.8796 -0.1251 7 6 5.6049 2.8704 -0.2499 8 7 4.0578 0.8589 1.2527 9 6 5.2798 0.2925 1.3011 10 8 5.9755 0.2655 0.3079 11 6 5.7813 -0.3083 2.5889 12 6 7.1839 -0.8802 2.3727 13 1 7.8354 -0.1031 1.9728 14 6 7.1138 -2.0275 1.3982 15 1 6.2539 -2.6810 1.3944 16 6 8.1474 -2.2430 0.5115 17 7 8.0438 -3.1822 -0.4034 18 14 9.6948 -1.2013 0.6097 19 1 10.6192 -1.7816 1.6166 20 1 10.3605 -1.1774 -0.7176 21 1 9.3349 0.1833 1.0081 22 6 7.7347 -1.3702 3.6870 23 6 7.1288 -2.4280 4.3389 24 6 7.6367 -2.8804 5.5423 25 6 8.7450 -2.2692 6.0984 26 6 9.3476 -1.2080 5.4490 27 6 8.8424 -0.7584 4.2435 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.6457 3.3431 -1.0109 36 1 3.7913 3.4463 0.7601 37 1 5.8936 2.3036 -1.1350 38 1 5.9683 3.8942 -0.3390 39 1 6.0391 2.4069 0.6360 40 1 3.5013 0.8803 2.0469 41 1 5.8175 0.4620 3.3593 42 1 5.1086 -1.1059 2.9040 43 1 8.7712 -3.3340 -1.0270 44 1 6.2607 -2.9029 3.9065 45 1 7.1661 -3.7097 6.0495 46 1 9.1401 -2.6209 7.0399 47 1 10.2137 -0.7307 5.8832 48 1 9.3134 0.0704 3.7360 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000475320825.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:10:40 Heat of formation + Delta-G solvation = -58.835921 kcal Electronic energy + Delta-G solvation = -25515.558711 eV Core-core repulsion = 22147.458387 eV Total energy + Delta-G solvation = -3368.100324 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.94505 -39.92834 -37.74976 -35.78541 -34.45651 -33.78701 -33.14163 -31.60870 -30.44858 -29.42320 -27.65879 -25.06359 -24.32512 -23.30066 -22.15548 -21.91462 -21.36482 -20.72778 -19.02697 -18.02054 -17.27499 -17.18506 -16.44292 -16.32537 -15.76990 -15.66774 -15.36645 -14.95343 -14.86230 -14.63991 -14.50375 -14.14992 -14.05353 -13.79030 -13.58432 -13.35026 -13.26001 -13.23320 -12.87430 -12.77680 -12.57515 -12.31963 -12.06867 -11.93995 -11.87534 -11.80462 -11.65386 -11.53504 -11.46260 -11.43739 -10.99907 -10.68763 -10.34907 -9.71611 -9.63823 -9.30507 -8.21768 -6.16991 0.66959 0.72577 1.28497 1.31984 1.37786 2.07727 2.39186 2.50821 3.08035 3.22913 3.70506 4.05740 4.11153 4.13681 4.19749 4.29591 4.31099 4.32359 4.39951 4.45919 4.49349 4.52315 4.63352 4.67494 4.80696 4.84707 4.87003 4.89007 4.91460 5.01256 5.06329 5.10053 5.16054 5.22450 5.26546 5.30324 5.37075 5.39442 5.41115 5.49833 5.52400 5.70438 5.75740 5.82487 5.85647 6.02314 6.33168 6.36904 6.81706 6.90133 7.46041 7.71829 8.95761 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.013161 B = 0.004622 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.059601 B = 6057.160782 C = 6696.068730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.128 4.128 3 C -0.111 4.111 4 C 0.141 3.859 5 H 0.046 0.954 6 C -0.122 4.122 7 C -0.144 4.144 8 N -0.720 5.720 9 C 0.509 3.491 10 O -0.550 6.550 11 C -0.113 4.113 12 C 0.050 3.950 13 H 0.036 0.964 14 C -0.457 4.457 15 H 0.034 0.966 16 C 0.025 3.975 17 N -0.953 5.953 18 Si 0.920 3.080 19 H -0.267 1.267 20 H -0.301 1.301 21 H -0.251 1.251 22 C -0.063 4.063 23 C -0.119 4.119 24 C -0.124 4.124 25 C -0.141 4.141 26 C -0.123 4.123 27 C -0.158 4.158 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.038 0.962 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.028 0.972 38 H 0.056 0.944 39 H 0.036 0.964 40 H 0.409 0.591 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.257 0.743 44 H 0.110 0.890 45 H 0.140 0.860 46 H 0.147 0.853 47 H 0.140 0.860 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.494 11.425 10.300 19.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.166 4.166 3 C -0.149 4.149 4 C 0.037 3.963 5 H 0.064 0.936 6 C -0.160 4.160 7 C -0.201 4.201 8 N -0.375 5.375 9 C 0.296 3.704 10 O -0.426 6.426 11 C -0.153 4.153 12 C 0.031 3.969 13 H 0.055 0.945 14 C -0.495 4.495 15 H 0.052 0.948 16 C -0.171 4.171 17 N -0.595 5.595 18 Si 0.748 3.252 19 H -0.192 1.192 20 H -0.228 1.228 21 H -0.176 1.176 22 C -0.064 4.064 23 C -0.137 4.137 24 C -0.142 4.142 25 C -0.159 4.159 26 C -0.141 4.141 27 C -0.177 4.177 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.047 0.953 38 H 0.075 0.925 39 H 0.055 0.945 40 H 0.245 0.755 41 H 0.118 0.882 42 H 0.109 0.891 43 H 0.066 0.934 44 H 0.128 0.872 45 H 0.158 0.842 46 H 0.165 0.835 47 H 0.158 0.842 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.903 11.327 9.428 18.332 hybrid contribution 0.908 -0.246 -0.605 1.118 sum -9.995 11.081 8.822 17.336 Atomic orbital electron populations 1.21727 0.94242 1.01757 1.02552 1.21528 0.96933 0.96930 1.01211 1.21823 0.91487 0.97128 1.04437 1.21032 0.94860 0.93683 0.86766 0.93613 1.21896 0.94812 0.96059 1.03252 1.21756 0.97401 1.00035 1.00935 1.45956 1.17346 1.60444 1.13784 1.20858 0.81599 0.77139 0.90798 1.90740 1.57390 1.56707 1.37743 1.21564 0.98141 1.00834 0.94728 1.18134 0.93560 0.95118 0.90118 0.94541 1.20778 1.03154 1.10987 1.14564 0.94818 1.25556 1.01105 0.95797 0.94633 1.70035 1.33584 1.35752 1.20160 0.86153 0.81045 0.81346 0.76670 1.19229 1.22792 1.17581 1.20547 0.95376 0.95526 0.94939 1.21013 1.00827 0.96484 0.95393 1.21413 0.97136 1.00119 0.95493 1.21344 0.96604 0.96805 1.01109 1.21339 1.00246 0.97687 0.94828 1.21211 0.97794 1.01288 0.97360 0.92134 0.93179 0.91422 0.94306 0.92684 0.89126 0.89341 0.89787 0.90047 0.95288 0.92508 0.94518 0.75500 0.88216 0.89098 0.93422 0.87225 0.84228 0.83510 0.84199 0.87542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.91 71.98 0.71 -1.61 16 2 C -0.13 -2.69 5.82 30.59 0.18 -2.51 16 3 C -0.11 -1.99 4.75 30.59 0.15 -1.85 16 4 C 0.14 3.70 2.26 44.99 0.10 3.80 16 5 H 0.05 1.60 7.58 -2.38 -0.02 1.58 16 6 C -0.12 -2.85 5.61 30.60 0.17 -2.68 16 7 C -0.14 -4.54 8.52 71.98 0.61 -3.93 16 8 N -0.72 -20.15 4.48 -442.53 -1.98 -22.13 16 9 C 0.51 19.83 6.15 87.66 0.54 20.37 16 10 O -0.55 -27.51 12.12 -3.05 -0.04 -27.55 16 11 C -0.11 -4.16 4.96 29.85 0.15 -4.02 16 12 C 0.05 2.32 1.21 -12.29 -0.01 2.30 16 13 H 0.04 1.84 4.70 -2.38 -0.01 1.83 16 14 C -0.46 -26.23 6.87 25.60 0.18 -26.05 16 15 H 0.03 2.12 8.06 -2.91 -0.02 2.10 16 16 C 0.03 1.55 5.47 84.65 0.46 2.02 16 17 N -0.95 -63.35 13.96 21.45 0.30 -63.05 16 18 Si 0.92 49.14 27.15 68.60 1.86 51.00 16 19 H -0.27 -13.59 7.11 99.48 0.71 -12.88 16 20 H -0.30 -16.26 7.11 99.48 0.71 -15.55 16 21 H -0.25 -12.83 6.06 99.48 0.60 -12.22 16 22 C -0.06 -2.62 4.55 -19.86 -0.09 -2.71 16 23 C -0.12 -4.51 8.87 22.27 0.20 -4.31 16 24 C -0.12 -3.82 10.05 22.27 0.22 -3.60 16 25 C -0.14 -3.95 10.05 22.27 0.22 -3.73 16 26 C -0.12 -3.78 10.05 22.27 0.22 -3.56 16 27 C -0.16 -5.95 9.43 22.27 0.21 -5.74 16 28 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.05 1.26 7.75 -2.38 -0.02 1.24 16 33 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.03 1.07 7.85 -2.39 -0.02 1.05 16 38 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.04 1.33 5.65 -2.39 -0.01 1.31 16 40 H 0.41 8.41 8.60 -92.71 -0.80 7.61 16 41 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 42 H 0.09 3.16 7.86 -2.39 -0.02 3.15 16 43 H 0.26 16.34 8.31 -92.71 -0.77 15.57 16 44 H 0.11 4.26 7.80 -2.91 -0.02 4.23 16 45 H 0.14 3.44 8.06 -2.91 -0.02 3.41 16 46 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 47 H 0.14 3.38 8.06 -2.91 -0.02 3.35 16 48 H 0.11 3.95 7.95 -2.91 -0.02 3.93 16 Total: -1.00 -77.55 380.19 4.38 -73.17 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: 0.02 Total: 26.35 kcal Atomic # 6 Polarization: -42.01 SS G_CDS: 4.22 Total: -37.79 kcal Atomic # 7 Polarization: -83.50 SS G_CDS: -1.68 Total: -85.18 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -0.04 Total: -27.55 kcal Atomic # 14 Polarization: 49.14 SS G_CDS: 1.86 Total: 51.00 kcal Total: -77.55 4.38 -73.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000475320825.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.333 kcal (2) G-P(sol) polarization free energy of solvation -77.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds