Wall clock time and date at job start Tue Mar 31 2020 08:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47114 * 2 1 4 4 C 1.52995 * 109.47631 * 120.00291 * 2 1 3 5 5 H 1.08999 * 109.47362 * 185.00086 * 4 2 1 6 6 N 1.46502 * 109.47042 * 64.99663 * 4 2 1 7 7 C 1.39663 * 119.99806 * 85.00517 * 6 4 2 8 8 C 1.38973 * 120.04649 * 0.02562 * 7 6 4 9 9 C 1.38116 * 120.03003 * 179.97438 * 8 7 6 10 10 C 1.38216 * 120.13578 * 359.74695 * 9 8 7 11 11 C 1.38779 * 120.08401 * 0.51068 * 10 9 8 12 12 O 1.35897 * 120.00949 * 179.76812 * 11 10 9 13 13 C 1.42898 * 117.00481 * 359.71829 * 12 11 10 14 14 C 1.52997 * 109.47319 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47466 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99890 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99563 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00432 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46616 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47104 * 119.99966 * 19 17 15 22 22 H 1.48489 * 109.47200 * 240.00246 * 19 17 15 23 23 C 1.38609 * 119.96517 * 359.48769 * 11 10 9 24 24 C 1.53002 * 109.46754 * 305.00238 * 4 2 1 25 25 C 1.53003 * 117.49463 * 248.74294 * 24 4 2 26 26 C 1.53002 * 117.49826 * 180.09100 * 24 4 2 27 27 H 1.09005 * 109.46957 * 299.99639 * 1 2 3 28 28 H 1.09001 * 109.47547 * 59.99725 * 1 2 3 29 29 H 1.08998 * 109.46947 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46957 * 240.00361 * 2 1 3 31 31 H 1.09001 * 109.47388 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47138 * 300.00526 * 3 2 1 33 33 H 1.08999 * 109.47200 * 60.00043 * 3 2 1 34 34 H 0.97001 * 119.99801 * 264.99724 * 6 4 2 35 35 H 1.07996 * 119.98339 * 359.95966 * 8 7 6 36 36 H 1.08007 * 119.92769 * 180.02562 * 9 8 7 37 37 H 1.07991 * 119.95689 * 180.26971 * 10 9 8 38 38 H 1.09002 * 109.47259 * 300.00417 * 13 12 11 39 39 H 1.09001 * 109.47074 * 60.00439 * 13 12 11 40 40 H 1.09002 * 109.47153 * 300.00307 * 14 13 12 41 41 H 1.08998 * 109.47533 * 59.99936 * 14 13 12 42 42 H 0.97002 * 119.99731 * 180.02562 * 18 17 15 43 43 H 1.08006 * 120.06150 * 180.23058 * 23 11 10 44 44 H 1.08996 * 115.55452 * 34.41506 * 24 4 2 45 45 H 1.09001 * 117.50288 * 0.02562 * 25 24 4 46 46 H 1.08999 * 117.49783 * 145.01918 * 25 24 4 47 47 H 1.08999 * 117.49597 * 214.97607 * 26 24 4 48 48 H 1.08997 * 117.49919 * 359.96389 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 3.1264 -0.6443 1.2950 6 7 1.6525 -2.1329 1.1904 7 6 2.4502 -3.0479 0.4998 8 6 3.6121 -2.6205 -0.1316 9 6 4.4010 -3.5257 -0.8141 10 6 4.0405 -4.8590 -0.8667 11 6 2.8785 -5.2906 -0.2425 12 8 2.5230 -6.6010 -0.2991 13 6 3.3887 -7.4774 -1.0233 14 6 2.8285 -8.9004 -0.9773 15 6 3.7417 -9.8248 -1.7404 16 1 4.6328 -9.4363 -2.2109 17 6 3.4402 -11.1667 -1.8372 18 7 2.3553 -11.6399 -1.2639 19 14 4.5719 -12.3125 -2.7838 20 1 5.7153 -11.5384 -3.3303 21 1 5.0804 -13.3696 -1.8732 22 1 3.8199 -12.9401 -3.8998 23 6 2.0839 -4.3854 0.4435 24 6 1.4300 -0.0763 2.4952 25 6 2.3685 0.7031 3.4186 26 6 1.8212 -0.6580 3.8552 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 0.8419 -2.4320 1.6313 35 1 3.8981 -1.5799 -0.0889 36 1 5.3039 -3.1918 -1.3039 37 1 4.6617 -5.5651 -1.3974 38 1 3.4558 -7.1471 -2.0599 39 1 4.3809 -7.4625 -0.5723 40 1 2.7611 -9.2310 0.0592 41 1 1.8364 -8.9152 -1.4285 42 1 2.1433 -12.5840 -1.3316 43 1 1.1813 -4.7202 0.9330 44 1 0.4121 0.2964 2.3813 45 1 3.4205 0.7568 3.1382 46 1 1.9679 1.5885 3.9123 47 1 1.0607 -0.6676 4.6360 48 1 2.5127 -1.5005 3.8622 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000537427248.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:40:00 Heat of formation + Delta-G solvation = -7.980787 kcal Electronic energy + Delta-G solvation = -24166.960911 eV Core-core repulsion = 20801.065832 eV Total energy + Delta-G solvation = -3365.895079 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 7.23 seconds Orbital eigenvalues (eV) -40.05525 -39.07865 -37.17089 -35.34974 -33.71647 -33.27526 -30.79691 -29.52311 -28.59725 -27.43406 -26.11738 -24.83658 -22.88646 -22.64140 -22.02411 -21.58637 -20.33082 -19.33803 -17.92266 -16.60292 -16.39161 -16.13375 -15.66429 -15.32610 -15.21956 -14.83739 -14.59863 -14.29678 -14.18039 -13.80483 -13.31423 -12.98493 -12.89214 -12.65050 -12.35203 -12.30763 -12.02416 -11.93960 -11.85897 -11.54172 -11.36022 -11.28268 -11.06334 -10.90885 -10.74408 -10.65768 -10.59635 -10.47627 -10.40247 -9.91252 -9.65221 -9.60964 -9.24785 -8.42774 -7.90219 -7.26165 -6.07804 -4.11973 1.76295 1.91972 3.06106 3.28393 3.35410 3.39343 3.66622 4.06167 4.15677 4.18760 4.44697 4.46952 4.65729 4.74646 4.79076 4.84829 4.97733 5.14072 5.26537 5.28692 5.30848 5.37963 5.39924 5.42578 5.56868 5.59255 5.60982 5.67019 5.68243 5.78746 5.82613 5.86334 5.88040 6.04523 6.09238 6.11594 6.13558 6.18900 6.46720 6.66597 6.71355 6.81183 6.93999 7.44981 7.56009 7.68468 7.74976 7.87155 8.15739 8.28141 8.94002 9.52156 11.03902 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.029897 B = 0.002292 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.315773 B =12213.024162 C =12416.989408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.110 4.110 3 C -0.144 4.144 4 C 0.191 3.809 5 H 0.078 0.922 6 N -0.739 5.739 7 C 0.251 3.749 8 C -0.246 4.246 9 C -0.037 4.037 10 C -0.266 4.266 11 C 0.188 3.812 12 O -0.317 6.317 13 C 0.067 3.933 14 C 0.024 3.976 15 C -0.524 4.524 16 H 0.059 0.941 17 C 0.059 3.941 18 N -0.890 5.890 19 Si 0.898 3.102 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.239 4.239 24 C -0.168 4.168 25 C -0.171 4.171 26 C -0.173 4.173 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.398 0.602 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.125 0.875 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.027 0.973 41 H 0.027 0.973 42 H 0.262 0.738 43 H 0.123 0.877 44 H 0.113 0.887 45 H 0.094 0.906 46 H 0.094 0.906 47 H 0.093 0.907 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.236 27.957 6.638 28.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.130 4.130 3 C -0.202 4.202 4 C 0.085 3.915 5 H 0.096 0.904 6 N -0.368 5.368 7 C 0.148 3.852 8 C -0.269 4.269 9 C -0.056 4.056 10 C -0.286 4.286 11 C 0.140 3.860 12 O -0.230 6.230 13 C -0.007 4.007 14 C -0.013 4.013 15 C -0.562 4.562 16 H 0.077 0.923 17 C -0.143 4.143 18 N -0.528 5.528 19 Si 0.726 3.274 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.263 4.263 24 C -0.186 4.186 25 C -0.208 4.208 26 C -0.210 4.210 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.233 0.767 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.143 0.857 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.072 0.928 43 H 0.141 0.859 44 H 0.130 0.870 45 H 0.113 0.887 46 H 0.113 0.887 47 H 0.112 0.888 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.420 27.845 6.733 28.683 hybrid contribution 0.423 -0.829 -0.486 1.050 sum -0.997 27.017 6.247 27.747 Atomic orbital electron populations 1.21852 0.95116 1.01994 1.01348 1.21573 0.96531 0.96180 0.98756 1.21794 1.00874 0.95728 1.01838 1.20422 0.98555 0.80303 0.92188 0.90382 1.44608 1.27501 1.05608 1.59057 1.17340 0.89820 0.88061 0.90002 1.20399 0.97938 0.99715 1.08831 1.20610 0.97533 0.92273 0.95162 1.21132 1.00190 0.97334 1.09967 1.18824 0.91573 0.84288 0.91321 1.86143 1.51206 1.14902 1.70701 1.23301 0.92582 0.91159 0.93685 1.19131 0.97351 0.86236 0.98558 1.21019 1.08634 0.92808 1.33770 0.92303 1.24998 0.95400 0.98228 0.95653 1.69992 1.24881 1.14238 1.43725 0.86433 0.80659 0.80679 0.79636 1.19629 1.20862 1.20857 1.19659 1.04286 0.90836 1.11471 1.22656 1.00440 1.04563 0.90944 1.22970 0.99192 0.95497 1.03148 1.22932 1.03841 0.97193 0.97052 0.92624 0.92952 0.92394 0.90502 0.92802 0.92721 0.92348 0.76729 0.86743 0.86498 0.85678 0.93127 0.93125 0.95448 0.95441 0.92802 0.85872 0.86965 0.88707 0.88723 0.88810 0.88429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.74 37.16 0.32 -0.77 16 2 C -0.11 -0.87 2.81 -90.62 -0.25 -1.12 16 3 C -0.14 -0.93 9.01 37.16 0.33 -0.60 16 4 C 0.19 1.55 1.62 -67.93 -0.11 1.44 16 5 H 0.08 0.69 6.24 -51.93 -0.32 0.37 16 6 N -0.74 -7.40 4.58 -52.19 -0.24 -7.64 16 7 C 0.25 3.31 6.63 -83.81 -0.56 2.76 16 8 C -0.25 -3.18 8.85 -39.35 -0.35 -3.53 16 9 C -0.04 -0.51 10.03 -39.63 -0.40 -0.91 16 10 C -0.27 -4.41 9.04 -39.39 -0.36 -4.76 16 11 C 0.19 3.44 6.68 -39.24 -0.26 3.18 16 12 O -0.32 -6.79 10.13 -19.42 -0.20 -6.99 16 13 C 0.07 1.48 4.68 37.16 0.17 1.66 16 14 C 0.02 0.65 5.34 -27.89 -0.15 0.50 16 15 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 16 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 19 Si 0.90 21.50 29.54 -169.99 -5.02 16.47 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 C -0.24 -3.80 9.83 -39.24 -0.39 -4.18 16 24 C -0.17 -1.13 3.97 -90.62 -0.36 -1.49 16 25 C -0.17 -1.05 10.18 -26.70 -0.27 -1.32 16 26 C -0.17 -1.22 10.13 -26.70 -0.27 -1.49 16 27 H 0.05 0.36 5.97 -51.93 -0.31 0.05 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.50 7.75 -51.93 -0.40 0.09 16 30 H 0.08 0.74 7.81 -51.93 -0.41 0.34 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.34 7.38 -51.93 -0.38 -0.04 16 34 H 0.40 3.71 8.61 -40.82 -0.35 3.35 16 35 H 0.11 1.25 6.20 -52.49 -0.33 0.92 16 36 H 0.12 1.33 8.06 -52.48 -0.42 0.90 16 37 H 0.13 2.07 6.29 -52.49 -0.33 1.74 16 38 H 0.05 1.07 7.67 -51.93 -0.40 0.67 16 39 H 0.05 1.07 7.65 -51.93 -0.40 0.68 16 40 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.12 1.87 8.06 -52.48 -0.42 1.44 16 44 H 0.11 0.71 5.83 -51.93 -0.30 0.41 16 45 H 0.09 0.58 8.05 -51.93 -0.42 0.17 16 46 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 383.74 15.07 5.78 5.78 Total: -1.00 -30.28 383.74 -10.35 -40.63 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -8.12 Total: 1.96 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: -3.30 Total: -24.18 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: 0.50 Total: -33.68 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -0.20 Total: -6.99 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.28 -10.35 -40.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000537427248.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.652 kcal (2) G-P(sol) polarization free energy of solvation -30.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.23 seconds