Wall clock time and date at job start Tue Mar 31 2020 08:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47114 * 2 1 4 4 C 1.52995 * 109.47631 * 120.00291 * 2 1 3 5 5 H 1.08999 * 109.47362 * 185.00086 * 4 2 1 6 6 N 1.46502 * 109.47042 * 64.99663 * 4 2 1 7 7 C 1.39663 * 119.99806 * 85.00517 * 6 4 2 8 8 C 1.38973 * 120.04649 * 0.02562 * 7 6 4 9 9 C 1.38116 * 120.03003 * 179.97438 * 8 7 6 10 10 C 1.38216 * 120.13578 * 359.74695 * 9 8 7 11 11 C 1.38779 * 120.08401 * 0.51068 * 10 9 8 12 12 O 1.35897 * 120.00949 * 179.76812 * 11 10 9 13 13 C 1.42898 * 117.00481 * 359.71829 * 12 11 10 14 14 C 1.52997 * 109.47319 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47466 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99890 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99563 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00432 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46616 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47104 * 119.99966 * 19 17 15 22 22 H 1.48489 * 109.47200 * 240.00246 * 19 17 15 23 23 C 1.38609 * 119.96517 * 359.48769 * 11 10 9 24 24 C 1.53002 * 109.46754 * 305.00238 * 4 2 1 25 25 C 1.53003 * 117.49463 * 248.74294 * 24 4 2 26 26 C 1.53002 * 117.49826 * 180.09100 * 24 4 2 27 27 H 1.09005 * 109.46957 * 299.99639 * 1 2 3 28 28 H 1.09001 * 109.47547 * 59.99725 * 1 2 3 29 29 H 1.08998 * 109.46947 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46957 * 240.00361 * 2 1 3 31 31 H 1.09001 * 109.47388 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47138 * 300.00526 * 3 2 1 33 33 H 1.08999 * 109.47200 * 60.00043 * 3 2 1 34 34 H 0.97001 * 119.99801 * 264.99724 * 6 4 2 35 35 H 1.07996 * 119.98339 * 359.95966 * 8 7 6 36 36 H 1.08007 * 119.92769 * 180.02562 * 9 8 7 37 37 H 1.07991 * 119.95689 * 180.26971 * 10 9 8 38 38 H 1.09002 * 109.47259 * 300.00417 * 13 12 11 39 39 H 1.09001 * 109.47074 * 60.00439 * 13 12 11 40 40 H 1.09002 * 109.47153 * 300.00307 * 14 13 12 41 41 H 1.08998 * 109.47533 * 59.99936 * 14 13 12 42 42 H 0.97002 * 119.99731 * 180.02562 * 18 17 15 43 43 H 1.08006 * 120.06150 * 180.23058 * 23 11 10 44 44 H 1.08996 * 115.55452 * 34.41506 * 24 4 2 45 45 H 1.09001 * 117.50288 * 0.02562 * 25 24 4 46 46 H 1.08999 * 117.49783 * 145.01918 * 25 24 4 47 47 H 1.08999 * 117.49597 * 214.97607 * 26 24 4 48 48 H 1.08997 * 117.49919 * 359.96389 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 3.1264 -0.6443 1.2950 6 7 1.6525 -2.1329 1.1904 7 6 2.4502 -3.0479 0.4998 8 6 3.6121 -2.6205 -0.1316 9 6 4.4010 -3.5257 -0.8141 10 6 4.0405 -4.8590 -0.8667 11 6 2.8785 -5.2906 -0.2425 12 8 2.5230 -6.6010 -0.2991 13 6 3.3887 -7.4774 -1.0233 14 6 2.8285 -8.9004 -0.9773 15 6 3.7417 -9.8248 -1.7404 16 1 4.6328 -9.4363 -2.2109 17 6 3.4402 -11.1667 -1.8372 18 7 2.3553 -11.6399 -1.2639 19 14 4.5719 -12.3125 -2.7838 20 1 5.7153 -11.5384 -3.3303 21 1 5.0804 -13.3696 -1.8732 22 1 3.8199 -12.9401 -3.8998 23 6 2.0839 -4.3854 0.4435 24 6 1.4300 -0.0763 2.4952 25 6 2.3685 0.7031 3.4186 26 6 1.8212 -0.6580 3.8552 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 0.8419 -2.4320 1.6313 35 1 3.8981 -1.5799 -0.0889 36 1 5.3039 -3.1918 -1.3039 37 1 4.6617 -5.5651 -1.3974 38 1 3.4558 -7.1471 -2.0599 39 1 4.3809 -7.4625 -0.5723 40 1 2.7611 -9.2310 0.0592 41 1 1.8364 -8.9152 -1.4285 42 1 2.1433 -12.5840 -1.3316 43 1 1.1813 -4.7202 0.9330 44 1 0.4121 0.2964 2.3813 45 1 3.4205 0.7568 3.1382 46 1 1.9679 1.5885 3.9123 47 1 1.0607 -0.6676 4.6360 48 1 2.5127 -1.5005 3.8622 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000537427248.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:54 Heat of formation + Delta-G solvation = -22.998748 kcal Electronic energy + Delta-G solvation = -24167.612139 eV Core-core repulsion = 20801.065832 eV Total energy + Delta-G solvation = -3366.546307 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.15319 -40.10511 -38.35806 -36.04512 -35.46114 -34.54100 -32.56232 -30.94237 -29.73494 -28.01170 -27.24702 -26.50774 -23.96684 -23.41579 -23.15567 -22.58061 -21.80505 -20.06309 -19.29174 -18.31979 -17.46784 -16.94277 -16.90485 -16.80121 -16.54517 -16.50859 -15.73647 -15.31473 -14.89696 -14.51774 -14.33320 -14.30453 -14.28752 -14.14757 -13.50578 -13.37628 -13.18354 -12.94292 -12.78771 -12.66580 -12.51020 -12.39352 -12.33374 -12.26420 -11.97055 -11.78212 -11.62923 -11.53795 -11.37406 -11.28995 -11.19084 -11.06350 -10.68759 -10.62788 -9.21327 -8.30179 -8.26874 -6.40475 0.58244 0.71161 1.40819 1.42065 1.55694 2.13147 2.37683 2.66808 2.97024 3.07451 3.11803 3.59486 3.86327 3.99408 4.08608 4.17048 4.21141 4.24404 4.28496 4.28748 4.30983 4.38070 4.40281 4.55993 4.64960 4.70615 4.74995 4.81573 4.83147 4.87386 5.01481 5.05900 5.08092 5.09772 5.28542 5.29876 5.30394 5.32371 5.33966 5.46910 5.47623 5.52309 5.53448 5.66062 5.67761 5.78267 6.07353 6.45755 6.63078 6.74510 6.84785 7.29570 8.86647 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.029897 B = 0.002292 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.315773 B =12213.024162 C =12416.989408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C -0.141 4.141 4 C 0.190 3.810 5 H 0.077 0.923 6 N -0.729 5.729 7 C 0.260 3.740 8 C -0.238 4.238 9 C -0.032 4.032 10 C -0.283 4.283 11 C 0.153 3.847 12 O -0.343 6.343 13 C 0.087 3.913 14 C 0.028 3.972 15 C -0.544 4.544 16 H 0.070 0.930 17 C 0.000 4.000 18 N -0.932 5.932 19 Si 0.978 3.022 20 H -0.258 1.258 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.254 4.254 24 C -0.166 4.166 25 C -0.159 4.159 26 C -0.183 4.183 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.402 0.598 35 H 0.142 0.858 36 H 0.148 0.852 37 H 0.120 0.880 38 H 0.058 0.942 39 H 0.059 0.941 40 H -0.002 1.002 41 H -0.002 1.002 42 H 0.267 0.733 43 H 0.120 0.880 44 H 0.121 0.879 45 H 0.097 0.903 46 H 0.109 0.891 47 H 0.100 0.900 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.137 30.581 6.402 31.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.127 4.127 3 C -0.199 4.199 4 C 0.086 3.914 5 H 0.095 0.905 6 N -0.356 5.356 7 C 0.154 3.846 8 C -0.261 4.261 9 C -0.050 4.050 10 C -0.304 4.304 11 C 0.106 3.894 12 O -0.257 6.257 13 C 0.013 3.987 14 C -0.009 4.009 15 C -0.582 4.582 16 H 0.089 0.911 17 C -0.198 4.198 18 N -0.571 5.571 19 Si 0.801 3.199 20 H -0.181 1.181 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.278 4.278 24 C -0.184 4.184 25 C -0.196 4.196 26 C -0.220 4.220 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.237 0.763 35 H 0.159 0.841 36 H 0.166 0.834 37 H 0.138 0.862 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.076 0.924 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.115 0.885 46 H 0.128 0.872 47 H 0.119 0.881 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.060 30.525 6.517 31.213 hybrid contribution -0.084 -1.453 -0.319 1.490 sum -0.144 29.072 6.198 29.725 Atomic orbital electron populations 1.21847 0.94931 1.01299 1.02147 1.21517 0.96663 0.96971 0.97535 1.21765 1.01130 0.94512 1.02447 1.20565 0.98626 0.78965 0.93285 0.90489 1.44748 1.26985 1.06145 1.57724 1.17390 0.90154 0.87472 0.89538 1.20732 0.97102 1.00860 1.07390 1.20945 0.98447 0.91056 0.94587 1.21196 0.99837 0.98719 1.10668 1.19153 0.93437 0.83048 0.93718 1.86052 1.51576 1.16736 1.71337 1.22830 0.92445 0.89014 0.94445 1.18975 0.96183 0.89474 0.96291 1.21422 1.09171 0.93571 1.34039 0.91148 1.26067 0.97059 1.00164 0.96541 1.70135 1.26904 1.14942 1.45120 0.85213 0.78575 0.78085 0.78041 1.18124 1.20167 1.20168 1.19764 1.04297 0.91838 1.11881 1.22596 1.01008 1.04771 0.90015 1.23052 0.99188 0.95354 1.02044 1.22920 1.04077 0.97467 0.97516 0.91263 0.92783 0.93821 0.92281 0.92384 0.92474 0.91412 0.76292 0.84065 0.83445 0.86157 0.92331 0.92307 0.98384 0.98384 0.92435 0.86178 0.86138 0.88504 0.87244 0.88139 0.90033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.74 71.98 0.63 -1.28 16 2 C -0.11 -1.44 2.81 -10.80 -0.03 -1.47 16 3 C -0.14 -1.41 9.01 71.98 0.65 -0.76 16 4 C 0.19 2.66 1.62 44.99 0.07 2.73 16 5 H 0.08 1.14 6.24 -2.39 -0.01 1.12 16 6 N -0.73 -13.68 4.58 -319.02 -1.46 -15.14 16 7 C 0.26 6.64 6.63 38.20 0.25 6.89 16 8 C -0.24 -5.65 8.85 22.42 0.20 -5.45 16 9 C -0.03 -0.82 10.03 22.24 0.22 -0.60 16 10 C -0.28 -9.41 9.04 22.39 0.20 -9.21 16 11 C 0.15 5.79 6.68 22.49 0.15 5.94 16 12 O -0.34 -15.54 10.13 -92.39 -0.94 -16.48 16 13 C 0.09 4.03 4.68 71.98 0.34 4.36 16 14 C 0.03 1.58 5.34 29.85 0.16 1.74 16 15 C -0.54 -31.48 9.11 25.60 0.23 -31.25 16 16 H 0.07 3.81 7.74 -2.91 -0.02 3.79 16 17 C 0.00 0.00 5.46 84.65 0.46 0.46 16 18 N -0.93 -57.64 13.29 21.45 0.28 -57.35 16 19 Si 0.98 44.22 29.54 68.60 2.03 46.25 16 20 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 21 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 22 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 23 C -0.25 -8.26 9.83 22.49 0.22 -8.04 16 24 C -0.17 -1.82 3.97 -10.79 -0.04 -1.86 16 25 C -0.16 -1.49 10.18 30.62 0.31 -1.18 16 26 C -0.18 -2.24 10.13 30.62 0.31 -1.93 16 27 H 0.07 0.72 5.97 -2.38 -0.01 0.70 16 28 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.04 0.70 7.75 -2.39 -0.02 0.68 16 30 H 0.06 1.02 7.81 -2.38 -0.02 1.01 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.07 0.57 7.38 -2.39 -0.02 0.55 16 34 H 0.40 7.14 8.61 -92.71 -0.80 6.34 16 35 H 0.14 2.60 6.20 -2.91 -0.02 2.58 16 36 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 37 H 0.12 4.01 6.29 -2.91 -0.02 3.99 16 38 H 0.06 2.57 7.67 -2.39 -0.02 2.55 16 39 H 0.06 2.58 7.65 -2.39 -0.02 2.56 16 40 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 41 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 42 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 43 H 0.12 3.83 8.06 -2.91 -0.02 3.81 16 44 H 0.12 1.17 5.83 -2.39 -0.01 1.15 16 45 H 0.10 0.90 8.05 -2.39 -0.02 0.88 16 46 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.10 1.09 8.14 -2.39 -0.02 1.08 16 48 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -67.52 383.74 4.39 -63.13 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 0.14 Total: 20.49 kcal Atomic # 6 Polarization: -45.24 SS G_CDS: 4.34 Total: -40.90 kcal Atomic # 7 Polarization: -71.32 SS G_CDS: -1.18 Total: -72.49 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.94 Total: -16.48 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -67.52 4.39 -63.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000537427248.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.133 kcal (2) G-P(sol) polarization free energy of solvation -67.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds