Wall clock time and date at job start Tue Mar 31 2020 09:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35895 * 116.99896 * 2 1 4 4 C 1.38473 * 119.79132 * 359.97438 * 3 2 1 5 5 C 1.38130 * 119.71498 * 180.02562 * 4 3 2 6 6 C 1.38006 * 119.82814 * 359.89569 * 5 4 3 7 7 C 1.38957 * 120.65438 * 0.04897 * 6 5 4 8 8 C 1.37570 * 119.71604 * 0.09584 * 7 6 5 9 9 C 1.50628 * 122.57803 * 179.72559 * 8 7 6 10 10 C 1.52745 * 110.58996 * 17.55316 * 9 8 7 11 11 C 1.53323 * 108.37231 * 308.96480 * 10 9 8 12 12 C 1.50639 * 117.69365 * 180.25598 * 7 6 5 13 13 H 1.09002 * 109.25831 * 77.18976 * 12 7 6 14 14 N 1.46911 * 109.25223 * 317.72471 * 12 7 6 15 15 C 1.46893 * 111.00296 * 155.44772 * 14 12 7 16 16 C 1.53003 * 109.47024 * 180.52757 * 15 14 12 17 17 C 1.52990 * 109.46999 * 60.00249 * 16 15 14 18 18 C 1.52996 * 109.46997 * 299.99957 * 16 15 14 19 19 C 1.50703 * 109.46861 * 180.02562 * 16 15 14 20 20 H 1.07995 * 119.99858 * 3.56317 * 19 16 15 21 21 C 1.37880 * 119.99935 * 183.56352 * 19 16 15 22 22 N 1.31510 * 119.99992 * 164.17841 * 21 19 16 23 23 Si 1.86803 * 119.99875 * 344.17977 * 21 19 16 24 24 H 1.48500 * 109.47333 * 268.98266 * 23 21 19 25 25 H 1.48504 * 109.46944 * 28.98095 * 23 21 19 26 26 H 1.48501 * 109.47191 * 148.97812 * 23 21 19 27 27 H 1.09004 * 109.47327 * 300.00005 * 1 2 3 28 28 H 1.09003 * 109.47326 * 59.99869 * 1 2 3 29 29 H 1.08998 * 109.47261 * 180.02562 * 1 2 3 30 30 H 1.08000 * 120.14188 * 0.06580 * 4 3 2 31 31 H 1.07993 * 120.08741 * 179.87016 * 5 4 3 32 32 H 1.08000 * 119.66298 * 180.02562 * 6 5 4 33 33 H 1.09000 * 109.24833 * 257.27744 * 9 8 7 34 34 H 1.08995 * 109.25600 * 137.84219 * 9 8 7 35 35 H 1.09001 * 109.68116 * 189.24358 * 10 9 8 36 36 H 1.09000 * 109.71090 * 68.70174 * 10 9 8 37 37 H 1.09000 * 109.68596 * 310.18940 * 11 10 9 38 38 H 1.09000 * 109.68537 * 189.63160 * 11 10 9 39 39 H 1.00897 * 110.99448 * 31.49367 * 14 12 7 40 40 H 1.09003 * 109.47109 * 60.53062 * 15 14 12 41 41 H 1.09001 * 109.47096 * 300.53018 * 15 14 12 42 42 H 1.08999 * 109.47224 * 169.56004 * 17 16 15 43 43 H 1.09004 * 109.47284 * 289.55951 * 17 16 15 44 44 H 1.09001 * 109.47426 * 49.55812 * 17 16 15 45 45 H 1.08995 * 109.47644 * 300.00154 * 18 16 15 46 46 H 1.09000 * 109.47283 * 60.00129 * 18 16 15 47 47 H 1.09003 * 109.47337 * 179.97438 * 18 16 15 48 48 H 0.97005 * 119.99863 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2875 2.3694 -0.0005 5 6 1.9162 3.5993 -0.0011 6 6 3.2947 3.6656 0.0011 7 6 4.0598 2.5056 0.0028 8 6 3.4379 1.2785 0.0004 9 6 4.2034 -0.0187 -0.0041 10 6 5.6510 0.2104 0.4259 11 6 6.2306 1.3525 -0.4170 12 6 5.5587 2.6556 0.0111 13 1 5.8883 2.9164 1.0168 14 7 5.9434 3.7269 -0.9176 15 6 7.2415 4.3052 -0.5456 16 6 7.6013 5.4235 -1.5258 17 6 6.5258 6.5105 -1.4765 18 6 7.6847 4.8524 -2.9428 19 6 8.9333 6.0164 -1.1445 20 1 9.4963 5.5964 -0.3242 21 6 9.4331 7.0951 -1.8429 22 7 10.4180 7.8057 -1.3386 23 14 8.7112 7.5469 -3.5055 24 1 9.4632 6.8478 -4.5783 25 1 7.2846 7.1374 -3.5535 26 1 8.8118 9.0149 -3.7064 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 0.2091 2.3116 0.0001 31 1 1.3306 4.5067 -0.0036 32 1 3.7835 4.6287 0.0011 33 1 4.1895 -0.4407 -1.0090 34 1 3.7300 -0.7178 0.6853 35 1 6.2309 -0.6979 0.2618 36 1 5.6827 0.4804 1.4815 37 1 6.0325 1.1669 -1.4726 38 1 7.3057 1.4221 -0.2514 39 1 5.2301 4.4390 -0.9636 40 1 8.0078 3.5308 -0.5808 41 1 7.1821 4.7120 0.4639 42 1 6.8682 7.3857 -2.0286 43 1 5.6073 6.1335 -1.9264 44 1 6.3355 6.7866 -0.4394 45 1 8.4509 4.0780 -2.9779 46 1 6.7215 4.4233 -3.2188 47 1 7.9406 5.6492 -3.6412 48 1 10.7694 8.5648 -1.8298 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572128339.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:28:25 Heat of formation + Delta-G solvation = -23.880348 kcal Electronic energy + Delta-G solvation = -25605.790602 eV Core-core repulsion = 22239.206066 eV Total energy + Delta-G solvation = -3366.584536 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 10.32 seconds Orbital eigenvalues (eV) -41.61258 -39.71765 -38.42136 -36.75687 -35.25007 -33.65219 -31.44025 -31.06709 -28.93967 -28.05398 -27.88589 -27.09045 -26.02924 -24.04194 -23.51147 -22.26057 -20.60926 -20.27118 -18.73713 -18.02129 -17.40699 -17.27578 -16.92841 -16.69434 -16.24687 -15.86271 -15.40387 -15.08887 -14.90241 -14.80611 -14.53738 -14.40095 -14.09576 -13.91594 -13.75846 -13.62353 -13.37560 -13.15358 -12.88670 -12.77204 -12.48134 -12.39910 -12.27834 -11.96440 -11.93124 -11.89476 -11.73808 -11.59299 -11.37186 -11.15215 -10.92685 -10.54056 -10.25279 -9.76932 -9.16838 -9.02496 -8.28801 -6.26321 0.34703 0.47041 1.36780 1.40796 1.49734 2.37288 2.37581 2.74068 3.08164 3.37844 3.64135 3.75381 4.04538 4.09199 4.11903 4.19685 4.30181 4.35422 4.39855 4.42689 4.44235 4.49722 4.52301 4.60485 4.66017 4.76100 4.78042 4.87649 4.92765 4.95289 4.99684 5.04879 5.07677 5.11575 5.14595 5.21462 5.30270 5.34183 5.42664 5.46199 5.53523 5.60071 5.67594 5.77985 5.80867 5.87483 6.19953 6.36407 6.48100 6.57345 6.80157 7.38424 8.88442 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.025281 B = 0.003489 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.295578 B = 8023.130407 C = 8607.064892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.329 6.329 3 C 0.115 3.885 4 C -0.212 4.212 5 C -0.082 4.082 6 C -0.170 4.170 7 C -0.046 4.046 8 C -0.115 4.115 9 C -0.064 4.064 10 C -0.113 4.113 11 C -0.104 4.104 12 C 0.127 3.873 13 H 0.045 0.955 14 N -0.678 5.678 15 C 0.098 3.902 16 C 0.037 3.963 17 C -0.141 4.141 18 C -0.130 4.130 19 C -0.513 4.513 20 H 0.029 0.971 21 C 0.018 3.982 22 N -0.947 5.947 23 Si 0.931 3.069 24 H -0.289 1.289 25 H -0.202 1.202 26 H -0.311 1.311 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.118 0.882 30 H 0.152 0.848 31 H 0.147 0.853 32 H 0.120 0.880 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.343 0.657 40 H 0.055 0.945 41 H 0.011 0.989 42 H 0.039 0.961 43 H 0.059 0.941 44 H 0.040 0.960 45 H 0.038 0.962 46 H 0.065 0.935 47 H 0.025 0.975 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.134 -16.053 2.446 28.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.243 6.243 3 C 0.070 3.930 4 C -0.230 4.230 5 C -0.100 4.100 6 C -0.189 4.189 7 C -0.046 4.046 8 C -0.116 4.116 9 C -0.101 4.101 10 C -0.151 4.151 11 C -0.143 4.143 12 C 0.018 3.982 13 H 0.063 0.937 14 N -0.312 5.312 15 C -0.031 4.031 16 C 0.036 3.964 17 C -0.199 4.199 18 C -0.186 4.186 19 C -0.551 4.551 20 H 0.047 0.953 21 C -0.179 4.179 22 N -0.587 5.587 23 Si 0.760 3.240 24 H -0.216 1.216 25 H -0.125 1.125 26 H -0.241 1.241 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.136 0.864 30 H 0.169 0.831 31 H 0.165 0.835 32 H 0.138 0.862 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.165 0.835 40 H 0.074 0.926 41 H 0.029 0.971 42 H 0.058 0.942 43 H 0.078 0.922 44 H 0.059 0.941 45 H 0.057 0.943 46 H 0.084 0.916 47 H 0.043 0.957 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.689 -16.541 1.977 28.148 hybrid contribution 0.244 1.497 0.255 1.539 sum -22.444 -15.044 2.232 27.112 Atomic orbital electron populations 1.23329 0.76657 1.05465 1.02133 1.86030 1.23161 1.26520 1.88556 1.19097 0.91704 0.85005 0.97192 1.21419 1.01058 0.91870 1.08699 1.21087 0.93933 0.98194 0.96807 1.21185 0.94825 0.97894 1.04983 1.19474 0.94709 0.92394 0.98031 1.19082 0.90888 0.95571 1.06039 1.20235 0.94389 0.93191 1.02238 1.21543 0.95357 0.98688 0.99470 1.21520 0.99216 0.92999 1.00524 1.20334 0.90198 0.93561 0.94147 0.93697 1.60751 1.04772 1.14754 1.50954 1.21700 0.90385 0.95619 0.95398 1.18441 0.92771 0.92133 0.93058 1.22241 0.98315 0.99106 1.00195 1.22095 1.00825 0.98814 0.96914 1.21195 1.04309 1.13808 1.15805 0.95305 1.25778 0.95395 0.95340 1.01369 1.70131 1.30294 1.19006 1.39302 0.86609 0.82563 0.74751 0.80083 1.21633 1.12507 1.24062 0.91797 0.91897 0.86373 0.83093 0.83530 0.86165 0.90785 0.90227 0.89619 0.91928 0.91437 0.92215 0.83526 0.92623 0.97123 0.94184 0.92181 0.94083 0.94301 0.91572 0.95682 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.33 -6.32 9.53 -92.37 -0.88 -7.20 16 3 C 0.12 2.55 6.65 22.60 0.15 2.70 16 4 C -0.21 -4.03 9.02 22.30 0.20 -3.83 16 5 C -0.08 -1.66 10.04 22.19 0.22 -1.44 16 6 C -0.17 -4.18 8.87 22.39 0.20 -3.98 16 7 C -0.05 -1.20 5.55 -19.87 -0.11 -1.31 16 8 C -0.11 -2.82 5.75 -19.78 -0.11 -2.93 16 9 C -0.06 -1.36 5.27 29.74 0.16 -1.20 16 10 C -0.11 -2.37 5.98 30.62 0.18 -2.18 16 11 C -0.10 -2.73 5.37 30.61 0.16 -2.57 16 12 C 0.13 3.62 2.53 44.06 0.11 3.73 16 13 H 0.05 1.36 7.79 -2.39 -0.02 1.34 16 14 N -0.68 -21.87 5.51 -495.99 -2.74 -24.60 16 15 C 0.10 3.84 4.36 86.31 0.38 4.22 16 16 C 0.04 1.65 0.57 -52.93 -0.03 1.62 16 17 C -0.14 -5.75 7.10 71.98 0.51 -5.24 16 18 C -0.13 -5.44 7.62 71.98 0.55 -4.90 16 19 C -0.51 -28.96 8.61 25.60 0.22 -28.74 16 20 H 0.03 1.81 7.99 -2.91 -0.02 1.79 16 21 C 0.02 1.06 5.29 84.66 0.45 1.51 16 22 N -0.95 -59.97 13.96 21.45 0.30 -59.67 16 23 Si 0.93 44.78 22.92 68.60 1.57 46.35 16 24 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 25 H -0.20 -8.49 4.40 99.48 0.44 -8.05 16 26 H -0.31 -15.22 7.11 99.48 0.71 -14.51 16 27 H 0.06 0.54 7.65 -2.39 -0.02 0.52 16 28 H 0.06 0.56 7.65 -2.39 -0.02 0.54 16 29 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.15 1.97 6.27 -2.91 -0.02 1.95 16 31 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 32 H 0.12 2.93 6.52 -2.91 -0.02 2.91 16 33 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.08 1.57 7.76 -2.39 -0.02 1.55 16 35 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.06 1.32 8.10 -2.39 -0.02 1.30 16 37 H 0.07 1.86 8.10 -2.39 -0.02 1.84 16 38 H 0.06 1.64 7.62 -2.39 -0.02 1.62 16 39 H 0.34 10.55 4.34 -89.70 -0.39 10.16 16 40 H 0.06 2.27 7.52 -2.39 -0.02 2.25 16 41 H 0.01 0.44 8.04 -2.39 -0.02 0.42 16 42 H 0.04 1.72 3.94 -2.39 -0.01 1.71 16 43 H 0.06 2.05 7.08 -2.39 -0.02 2.04 16 44 H 0.04 1.63 8.11 -2.39 -0.02 1.61 16 45 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.07 2.46 7.60 -2.39 -0.02 2.44 16 47 H 0.02 1.08 2.66 -2.39 -0.01 1.07 16 48 H 0.26 15.68 8.31 -92.70 -0.77 14.91 16 Total: -1.00 -67.49 352.58 2.90 -64.59 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: 0.29 Total: 23.78 kcal Atomic # 6 Polarization: -47.59 SS G_CDS: 4.35 Total: -43.24 kcal Atomic # 7 Polarization: -81.84 SS G_CDS: -2.44 Total: -84.27 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -0.88 Total: -7.20 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.57 Total: 46.35 kcal Total: -67.49 2.90 -64.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572128339.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.710 kcal (2) G-P(sol) polarization free energy of solvation -67.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.32 seconds