Wall clock time and date at job start Tue Mar 31 2020 09:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47467 * 2 1 4 4 C 1.52997 * 109.47056 * 240.00044 * 2 1 3 5 5 N 1.46496 * 109.47233 * 60.00037 * 4 2 1 6 6 C 1.34777 * 120.00004 * 179.97438 * 5 4 2 7 7 O 1.21274 * 120.00111 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99729 * 180.02562 * 6 5 4 9 9 C 1.52997 * 109.46959 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47295 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.47295 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.46962 * 179.97438 * 11 10 9 13 13 H 1.07996 * 120.00441 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99522 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00384 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99562 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47534 * 60.00321 * 16 14 12 18 18 H 1.48500 * 109.47049 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47368 * 299.99972 * 16 14 12 20 20 C 1.50706 * 109.47428 * 120.00093 * 2 1 3 21 21 C 1.38237 * 119.99761 * 300.00365 * 20 2 1 22 22 C 1.38235 * 119.99712 * 179.97438 * 21 20 2 23 23 C 1.38234 * 120.00220 * 359.94731 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38234 * 120.00191 * 119.97467 * 20 2 1 26 26 H 1.09007 * 109.46732 * 299.99668 * 1 2 3 27 27 H 1.08992 * 109.46964 * 59.99919 * 1 2 3 28 28 H 1.08999 * 109.47201 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47368 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46902 * 300.00766 * 3 2 1 31 31 H 1.09004 * 109.47125 * 59.99963 * 3 2 1 32 32 H 1.09006 * 109.47161 * 180.02562 * 4 2 1 33 33 H 1.08999 * 109.47108 * 300.00048 * 4 2 1 34 34 H 0.97005 * 119.99839 * 0.02562 * 5 4 2 35 35 H 1.09002 * 109.46639 * 299.99946 * 8 6 5 36 36 H 1.08999 * 109.47308 * 60.00003 * 8 6 5 37 37 H 1.09006 * 109.46836 * 299.99739 * 9 8 6 38 38 H 1.08999 * 109.47432 * 59.99682 * 9 8 6 39 39 H 1.09006 * 109.46878 * 299.99607 * 10 9 8 40 40 H 1.08999 * 109.47227 * 59.99450 * 10 9 8 41 41 H 1.08994 * 109.47559 * 299.99650 * 11 10 9 42 42 H 1.08999 * 109.47108 * 59.99774 * 11 10 9 43 43 H 0.97003 * 119.99577 * 179.97438 * 15 14 12 44 44 H 1.08005 * 120.00088 * 359.96779 * 21 20 2 45 45 H 1.07999 * 119.99770 * 179.97438 * 22 21 20 46 46 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 47 47 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 48 48 H 1.07999 * 119.99990 * 0.02562 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.5517 -0.0306 -2.4454 6 6 1.8777 -0.4908 -3.6695 7 8 2.5756 -1.4763 -3.7808 8 6 1.3758 0.2200 -4.8999 9 6 1.8856 -0.5013 -6.1492 10 6 1.3767 0.2206 -7.3984 11 6 1.8871 -0.5003 -8.6476 12 6 1.3852 0.2105 -9.8781 13 1 0.7647 1.0888 -9.7791 14 6 1.7192 -0.2600 -11.1304 15 7 2.4753 -1.3293 -11.2511 16 14 1.0977 0.6215 -12.6555 17 1 1.5928 2.0215 -12.6546 18 1 1.5930 -0.0783 -13.8681 19 1 -0.3874 0.6217 -12.6566 20 6 2.0324 -0.7104 1.2305 21 6 1.6984 -0.2382 2.4860 22 6 2.1588 -0.8902 3.6147 23 6 2.9523 -2.0150 3.4878 24 6 3.2903 -2.4844 2.2323 25 6 2.8267 -1.8346 1.1036 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6768 1.9564 0.8900 32 1 3.1300 -0.7216 -1.2490 33 1 1.6766 -1.7489 -1.2492 34 1 0.9943 0.7583 -2.3563 35 1 0.2858 0.2200 -4.9002 36 1 1.7391 1.2476 -4.8996 37 1 2.9757 -0.5017 -6.1490 38 1 1.5220 -1.5288 -6.1494 39 1 0.2866 0.2214 -7.3988 40 1 1.7407 1.2480 -7.3980 41 1 2.9770 -0.5007 -8.6471 42 1 1.5234 -1.5278 -8.6482 43 1 2.7099 -1.6604 -12.1321 44 1 1.0778 0.6402 2.5851 45 1 1.8982 -0.5210 4.5956 46 1 3.3117 -2.5245 4.3697 47 1 3.9138 -3.3606 2.1332 48 1 3.0876 -2.2036 0.1227 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588153339.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:33:49 Heat of formation + Delta-G solvation = -49.835207 kcal Electronic energy + Delta-G solvation = -23630.291975 eV Core-core repulsion = 20262.581952 eV Total energy + Delta-G solvation = -3367.710023 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -40.54901 -39.38963 -37.06035 -34.85888 -33.61074 -32.57379 -31.38571 -30.16015 -29.68845 -27.69028 -27.11819 -25.29522 -23.29854 -22.67605 -22.00393 -20.34261 -19.95396 -19.57858 -17.48008 -16.77374 -16.22517 -15.91541 -15.84286 -15.33386 -15.02524 -14.89324 -14.42823 -14.21887 -13.92576 -13.90062 -13.71218 -13.40317 -13.19040 -12.57170 -12.55520 -12.35414 -12.26282 -11.97578 -11.79166 -11.65206 -11.56864 -11.46333 -11.05688 -10.94693 -10.87028 -10.51801 -10.49533 -10.37864 -9.78765 -9.58244 -9.27244 -9.19434 -9.11364 -9.05297 -8.96453 -8.28083 -5.92956 -3.95499 1.00901 1.06659 2.77331 3.13986 3.36707 3.41026 3.43285 3.43591 4.15067 4.22845 4.50685 4.54687 4.65833 4.67209 4.74541 4.80291 4.92420 5.12885 5.18889 5.19417 5.34006 5.34591 5.37225 5.39919 5.42357 5.48045 5.50387 5.60586 5.68681 5.70424 5.77294 5.87446 5.90272 6.13156 6.17268 6.18776 6.26315 6.33425 6.36811 6.58222 6.65847 6.87342 7.05406 7.22934 7.46038 7.76333 7.92913 8.08585 8.30469 8.50258 9.12016 9.67884 11.18285 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.041447 B = 0.001891 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.392780 B =14802.792349 C =15265.911086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.037 4.037 3 C -0.140 4.140 4 C 0.128 3.872 5 N -0.737 5.737 6 C 0.511 3.489 7 O -0.536 6.536 8 C -0.139 4.139 9 C -0.103 4.103 10 C -0.110 4.110 11 C 0.020 3.980 12 C -0.521 4.521 13 H 0.054 0.946 14 C 0.055 3.945 15 N -0.895 5.895 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.067 4.067 21 C -0.114 4.114 22 C -0.120 4.120 23 C -0.125 4.125 24 C -0.116 4.116 25 C -0.121 4.121 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.398 0.602 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.260 0.740 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.120 0.880 47 H 0.122 0.878 48 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.784 3.921 32.773 33.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.037 4.037 3 C -0.197 4.197 4 C 0.004 3.996 5 N -0.391 5.391 6 C 0.299 3.701 7 O -0.411 6.411 8 C -0.179 4.179 9 C -0.141 4.141 10 C -0.148 4.148 11 C -0.017 4.017 12 C -0.559 4.559 13 H 0.072 0.928 14 C -0.146 4.146 15 N -0.534 5.534 16 Si 0.720 3.280 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.067 4.067 21 C -0.132 4.132 22 C -0.138 4.138 23 C -0.143 4.143 24 C -0.134 4.134 25 C -0.139 4.139 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.233 0.767 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.138 0.862 47 H 0.140 0.860 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.186 3.077 32.546 32.764 hybrid contribution -0.546 0.775 -0.733 1.198 sum -2.732 3.852 31.813 32.162 Atomic orbital electron populations 1.21909 0.92966 1.02664 1.02164 1.19724 0.96372 0.95693 0.91904 1.21909 1.01740 0.93888 1.02164 1.21436 0.99232 0.96026 0.82906 1.46149 1.54854 1.32502 1.05610 1.21091 0.79825 0.84612 0.84605 1.90703 1.37331 1.26301 1.86808 1.21793 1.02349 1.00768 0.92959 1.21446 1.01206 0.99453 0.92011 1.21650 0.99463 0.98884 0.94797 1.19095 0.96461 0.95620 0.90573 1.21252 1.31335 1.12159 0.91163 0.92813 1.25046 0.95296 0.95121 0.99132 1.69969 1.36948 1.23062 1.23469 0.86669 0.79130 0.79749 0.82475 1.20305 1.21329 1.20308 1.19638 0.97649 0.95575 0.93874 1.20940 1.00323 1.00069 0.91819 1.21125 0.98207 0.96005 0.98441 1.21169 0.98769 0.96922 0.97486 1.21190 0.99748 0.99916 0.92526 1.21277 0.97761 0.95494 0.99335 0.92025 0.91990 0.92061 0.92061 0.91985 0.92031 0.91247 0.91249 0.76654 0.89204 0.89196 0.91827 0.91822 0.93499 0.93502 0.96588 0.96592 0.93008 0.86120 0.86162 0.86225 0.85976 0.85371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 8.11 37.16 0.30 -0.57 16 2 C -0.04 -0.26 0.61 -155.66 -0.10 -0.35 16 3 C -0.14 -0.87 8.11 37.16 0.30 -0.57 16 4 C 0.13 1.21 3.22 -4.05 -0.01 1.19 16 5 N -0.74 -7.26 4.96 -60.30 -0.30 -7.56 16 6 C 0.51 7.11 7.83 -10.98 -0.09 7.02 16 7 O -0.54 -9.82 15.98 5.56 0.09 -9.73 16 8 C -0.14 -1.85 5.70 -27.88 -0.16 -2.00 16 9 C -0.10 -1.87 4.50 -26.73 -0.12 -1.99 16 10 C -0.11 -2.30 5.15 -26.73 -0.14 -2.43 16 11 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 12 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 13 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 14 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.70 13.29 55.43 0.74 -26.97 16 16 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 20 C -0.07 -0.52 4.76 -104.62 -0.50 -1.02 16 21 C -0.11 -0.80 8.71 -39.58 -0.34 -1.14 16 22 C -0.12 -0.81 10.05 -39.58 -0.40 -1.21 16 23 C -0.13 -0.88 10.05 -39.58 -0.40 -1.28 16 24 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 25 C -0.12 -1.03 8.98 -39.58 -0.36 -1.38 16 26 H 0.06 0.32 7.39 -51.92 -0.38 -0.06 16 27 H 0.06 0.34 6.86 -51.93 -0.36 -0.01 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.34 6.86 -51.93 -0.36 -0.01 16 31 H 0.06 0.32 7.39 -51.93 -0.38 -0.06 16 32 H 0.07 0.74 7.51 -51.93 -0.39 0.35 16 33 H 0.07 0.74 7.51 -51.93 -0.39 0.35 16 34 H 0.40 2.83 6.16 -40.82 -0.25 2.58 16 35 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 38 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 44 H 0.12 0.65 7.10 -52.48 -0.37 0.28 16 45 H 0.12 0.58 8.06 -52.49 -0.42 0.15 16 46 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 47 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 48 H 0.13 1.10 5.90 -52.49 -0.31 0.79 16 LS Contribution 384.71 15.07 5.80 5.80 Total: -1.00 -34.21 384.71 -9.87 -44.08 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -8.23 Total: -2.07 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: -2.95 Total: -20.57 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: 0.44 Total: -34.53 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.21 -9.87 -44.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588153339.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.754 kcal (2) G-P(sol) polarization free energy of solvation -34.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds