Wall clock time and date at job start Tue Mar 31 2020 09:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47467 * 2 1 4 4 C 1.52997 * 109.47056 * 240.00044 * 2 1 3 5 5 N 1.46496 * 109.47233 * 60.00037 * 4 2 1 6 6 C 1.34777 * 120.00004 * 179.97438 * 5 4 2 7 7 O 1.21274 * 120.00111 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99729 * 180.02562 * 6 5 4 9 9 C 1.52997 * 109.46959 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47295 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.47295 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.46962 * 179.97438 * 11 10 9 13 13 H 1.07996 * 120.00441 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99522 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00384 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99562 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47534 * 60.00321 * 16 14 12 18 18 H 1.48500 * 109.47049 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47368 * 299.99972 * 16 14 12 20 20 C 1.50706 * 109.47428 * 120.00093 * 2 1 3 21 21 C 1.38237 * 119.99761 * 300.00365 * 20 2 1 22 22 C 1.38235 * 119.99712 * 179.97438 * 21 20 2 23 23 C 1.38234 * 120.00220 * 359.94731 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38234 * 120.00191 * 119.97467 * 20 2 1 26 26 H 1.09007 * 109.46732 * 299.99668 * 1 2 3 27 27 H 1.08992 * 109.46964 * 59.99919 * 1 2 3 28 28 H 1.08999 * 109.47201 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47368 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46902 * 300.00766 * 3 2 1 31 31 H 1.09004 * 109.47125 * 59.99963 * 3 2 1 32 32 H 1.09006 * 109.47161 * 180.02562 * 4 2 1 33 33 H 1.08999 * 109.47108 * 300.00048 * 4 2 1 34 34 H 0.97005 * 119.99839 * 0.02562 * 5 4 2 35 35 H 1.09002 * 109.46639 * 299.99946 * 8 6 5 36 36 H 1.08999 * 109.47308 * 60.00003 * 8 6 5 37 37 H 1.09006 * 109.46836 * 299.99739 * 9 8 6 38 38 H 1.08999 * 109.47432 * 59.99682 * 9 8 6 39 39 H 1.09006 * 109.46878 * 299.99607 * 10 9 8 40 40 H 1.08999 * 109.47227 * 59.99450 * 10 9 8 41 41 H 1.08994 * 109.47559 * 299.99650 * 11 10 9 42 42 H 1.08999 * 109.47108 * 59.99774 * 11 10 9 43 43 H 0.97003 * 119.99577 * 179.97438 * 15 14 12 44 44 H 1.08005 * 120.00088 * 359.96779 * 21 20 2 45 45 H 1.07999 * 119.99770 * 179.97438 * 22 21 20 46 46 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 47 47 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 48 48 H 1.07999 * 119.99990 * 0.02562 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.5517 -0.0306 -2.4454 6 6 1.8777 -0.4908 -3.6695 7 8 2.5756 -1.4763 -3.7808 8 6 1.3758 0.2200 -4.8999 9 6 1.8856 -0.5013 -6.1492 10 6 1.3767 0.2206 -7.3984 11 6 1.8871 -0.5003 -8.6476 12 6 1.3852 0.2105 -9.8781 13 1 0.7647 1.0888 -9.7791 14 6 1.7192 -0.2600 -11.1304 15 7 2.4753 -1.3293 -11.2511 16 14 1.0977 0.6215 -12.6555 17 1 1.5928 2.0215 -12.6546 18 1 1.5930 -0.0783 -13.8681 19 1 -0.3874 0.6217 -12.6566 20 6 2.0324 -0.7104 1.2305 21 6 1.6984 -0.2382 2.4860 22 6 2.1588 -0.8902 3.6147 23 6 2.9523 -2.0150 3.4878 24 6 3.2903 -2.4844 2.2323 25 6 2.8267 -1.8346 1.1036 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6768 1.9564 0.8900 32 1 3.1300 -0.7216 -1.2490 33 1 1.6766 -1.7489 -1.2492 34 1 0.9943 0.7583 -2.3563 35 1 0.2858 0.2200 -4.9002 36 1 1.7391 1.2476 -4.8996 37 1 2.9757 -0.5017 -6.1490 38 1 1.5220 -1.5288 -6.1494 39 1 0.2866 0.2214 -7.3988 40 1 1.7407 1.2480 -7.3980 41 1 2.9770 -0.5007 -8.6471 42 1 1.5234 -1.5278 -8.6482 43 1 2.7099 -1.6604 -12.1321 44 1 1.0778 0.6402 2.5851 45 1 1.8982 -0.5210 4.5956 46 1 3.3117 -2.5245 4.3697 47 1 3.9138 -3.3606 2.1332 48 1 3.0876 -2.2036 0.1227 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588153339.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:33:49 Heat of formation + Delta-G solvation = -69.092475 kcal Electronic energy + Delta-G solvation = -23631.127033 eV Core-core repulsion = 20262.581952 eV Total energy + Delta-G solvation = -3368.545081 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.29413 -40.31361 -37.79157 -36.59255 -34.63009 -34.46831 -31.96650 -31.51707 -30.56744 -28.28594 -28.16932 -26.82371 -24.34959 -23.58152 -22.99545 -21.78307 -21.33678 -20.20100 -18.41228 -18.26080 -17.60549 -16.98067 -16.83869 -16.49044 -15.95121 -15.90228 -15.71152 -15.08130 -14.81937 -14.77884 -14.49879 -14.31333 -14.10010 -14.02586 -13.59866 -13.58746 -13.24412 -13.05335 -12.81032 -12.76960 -12.73670 -12.37759 -12.31362 -12.14662 -12.11452 -12.03723 -11.60485 -11.45250 -11.36428 -11.34843 -11.16930 -10.76672 -10.53722 -10.11479 -9.80158 -9.60013 -8.17784 -6.30164 0.45853 0.50826 1.40721 1.44936 1.52770 1.67209 2.20360 2.42796 2.88469 3.14647 3.53943 3.66643 3.87729 3.93351 4.07730 4.12075 4.15213 4.16700 4.21103 4.31042 4.58554 4.62502 4.63515 4.66045 4.70961 4.74855 4.81005 4.85951 4.88730 4.95359 4.95896 4.98739 5.16013 5.18553 5.20577 5.27766 5.34540 5.36557 5.37884 5.45344 5.58070 5.62468 5.65430 5.69762 5.79043 5.88815 6.12906 6.25933 6.56502 6.88156 7.29216 7.39342 8.94187 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.041447 B = 0.001891 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.392780 B =14802.792349 C =15265.911086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.026 4.026 3 C -0.139 4.139 4 C 0.130 3.870 5 N -0.714 5.714 6 C 0.510 3.490 7 O -0.590 6.590 8 C -0.128 4.128 9 C -0.096 4.096 10 C -0.095 4.095 11 C 0.018 3.982 12 C -0.543 4.543 13 H 0.067 0.933 14 C -0.008 4.008 15 N -0.938 5.938 16 Si 0.971 3.029 17 H -0.264 1.264 18 H -0.286 1.286 19 H -0.264 1.264 20 C -0.076 4.076 21 C -0.117 4.117 22 C -0.123 4.123 23 C -0.133 4.133 24 C -0.130 4.130 25 C -0.143 4.143 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.416 0.584 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.061 0.939 40 H 0.061 0.939 41 H -0.016 1.016 42 H -0.016 1.016 43 H 0.263 0.737 44 H 0.141 0.859 45 H 0.143 0.857 46 H 0.138 0.862 47 H 0.128 0.872 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.830 6.816 34.136 35.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.027 4.027 3 C -0.196 4.196 4 C 0.006 3.994 5 N -0.368 5.368 6 C 0.298 3.702 7 O -0.470 6.470 8 C -0.167 4.167 9 C -0.135 4.135 10 C -0.133 4.133 11 C -0.020 4.020 12 C -0.580 4.580 13 H 0.085 0.915 14 C -0.205 4.205 15 N -0.578 5.578 16 Si 0.794 3.206 17 H -0.189 1.189 18 H -0.211 1.211 19 H -0.189 1.189 20 C -0.076 4.076 21 C -0.135 4.135 22 C -0.141 4.141 23 C -0.151 4.151 24 C -0.148 4.148 25 C -0.161 4.161 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.255 0.745 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.002 0.998 42 H 0.002 0.998 43 H 0.071 0.929 44 H 0.159 0.841 45 H 0.161 0.839 46 H 0.156 0.844 47 H 0.146 0.854 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.266 6.018 33.954 34.746 hybrid contribution 0.132 -0.184 -1.093 1.116 sum -4.134 5.834 32.861 33.629 Atomic orbital electron populations 1.21921 0.91855 1.02307 1.03516 1.19651 0.97064 0.95862 0.90103 1.21922 1.01009 0.93151 1.03518 1.21415 0.98356 0.95747 0.83864 1.45924 1.53837 1.32488 1.04548 1.21222 0.79195 0.83921 0.85870 1.90695 1.39980 1.28777 1.87590 1.21677 1.03988 1.01170 0.89904 1.21245 0.99843 0.98749 0.93628 1.21448 1.00131 0.98883 0.92828 1.19066 0.94490 0.94719 0.93677 1.21734 1.31519 1.12682 0.92109 0.91493 1.26114 0.95328 0.95882 1.03178 1.70134 1.38334 1.24884 1.24462 0.85422 0.79007 0.78673 0.77451 1.18887 1.21112 1.18896 1.19767 0.97685 0.95446 0.94710 1.21189 1.00324 1.00635 0.91327 1.21469 0.97527 0.95627 0.99507 1.21449 0.98719 0.97256 0.97662 1.21382 1.00148 1.00374 0.92893 1.21334 0.99048 0.96580 0.99150 0.90394 0.90917 0.93296 0.93294 0.90910 0.90399 0.92838 0.92839 0.74531 0.86227 0.86221 0.93999 0.93988 0.91991 0.91997 0.99770 0.99774 0.92883 0.84090 0.83896 0.84446 0.85362 0.86672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.11 71.98 0.58 -0.82 16 2 C -0.03 -0.34 0.61 -52.93 -0.03 -0.37 16 3 C -0.14 -1.41 8.11 71.98 0.58 -0.82 16 4 C 0.13 2.48 3.22 86.38 0.28 2.76 16 5 N -0.71 -13.11 4.96 -463.07 -2.30 -15.41 16 6 C 0.51 13.89 7.83 87.66 0.69 14.58 16 7 O -0.59 -22.53 15.98 -3.01 -0.05 -22.58 16 8 C -0.13 -3.13 5.70 29.85 0.17 -2.96 16 9 C -0.10 -3.53 4.50 30.59 0.14 -3.39 16 10 C -0.10 -3.92 5.15 30.59 0.16 -3.76 16 11 C 0.02 0.98 4.97 29.85 0.15 1.13 16 12 C -0.54 -31.69 9.11 25.60 0.23 -31.46 16 13 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 14 C -0.01 -0.47 5.46 84.65 0.46 0.00 16 15 N -0.94 -59.51 13.29 21.45 0.28 -59.22 16 16 Si 0.97 45.02 29.54 68.60 2.03 47.04 16 17 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 18 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 19 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 20 C -0.08 -1.13 4.76 -19.86 -0.09 -1.23 16 21 C -0.12 -1.41 8.71 22.27 0.19 -1.22 16 22 C -0.12 -1.43 10.05 22.27 0.22 -1.21 16 23 C -0.13 -1.73 10.05 22.27 0.22 -1.51 16 24 C -0.13 -2.06 10.05 22.27 0.22 -1.84 16 25 C -0.14 -2.56 8.98 22.27 0.20 -2.36 16 26 H 0.08 0.56 7.39 -2.38 -0.02 0.55 16 27 H 0.07 0.57 6.86 -2.39 -0.02 0.56 16 28 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.57 6.86 -2.39 -0.02 0.56 16 31 H 0.08 0.56 7.39 -2.38 -0.02 0.54 16 32 H 0.05 1.21 7.51 -2.38 -0.02 1.19 16 33 H 0.05 1.21 7.51 -2.39 -0.02 1.19 16 34 H 0.42 4.67 6.16 -92.70 -0.57 4.09 16 35 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.04 1.69 8.10 -2.38 -0.02 1.67 16 38 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 39 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 40 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 41 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 42 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 43 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 44 H 0.14 1.06 7.10 -2.91 -0.02 1.04 16 45 H 0.14 0.95 8.06 -2.91 -0.02 0.93 16 46 H 0.14 1.21 8.06 -2.91 -0.02 1.18 16 47 H 0.13 1.72 8.06 -2.91 -0.02 1.69 16 48 H 0.12 2.25 5.90 -2.91 -0.02 2.23 16 Total: -1.00 -77.51 384.71 4.70 -72.82 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.35 Total: 11.84 kcal Atomic # 6 Polarization: -38.87 SS G_CDS: 4.38 Total: -34.49 kcal Atomic # 7 Polarization: -72.62 SS G_CDS: -2.01 Total: -74.63 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.05 Total: -22.58 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -77.51 4.70 -72.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588153339.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.725 kcal (2) G-P(sol) polarization free energy of solvation -77.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds