Wall clock time and date at job start Tue Mar 31 2020 08:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47507 * 2 1 4 4 C 1.53000 * 109.47148 * 119.99942 * 2 1 3 5 5 H 1.09003 * 109.47697 * 185.00052 * 4 2 1 6 6 N 1.46500 * 109.47369 * 64.99963 * 4 2 1 7 7 C 1.34779 * 119.99934 * 84.99740 * 6 4 2 8 8 O 1.21280 * 119.99819 * 0.02562 * 7 6 4 9 9 C 1.50702 * 119.99839 * 180.02562 * 7 6 4 10 10 C 1.52995 * 109.46906 * 180.02562 * 9 7 6 11 11 C 1.53007 * 109.47080 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46807 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.46633 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00137 * 0.02562 * 13 12 11 15 15 C 1.37883 * 119.99839 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99984 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99670 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47327 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46779 * 120.00233 * 17 15 13 20 20 H 1.48500 * 109.46891 * 239.99772 * 17 15 13 21 21 C 1.50703 * 109.47337 * 304.99749 * 4 2 1 22 22 C 1.38235 * 120.00292 * 260.00106 * 21 4 2 23 23 C 1.38230 * 119.99899 * 179.97438 * 22 21 4 24 24 C 1.38235 * 120.00326 * 359.95697 * 23 22 21 25 25 C 1.38234 * 119.99814 * 359.97438 * 24 23 22 26 26 C 1.38234 * 119.99503 * 79.97399 * 21 4 2 27 27 H 1.09004 * 109.46869 * 300.00367 * 1 2 3 28 28 H 1.09005 * 109.46938 * 60.00100 * 1 2 3 29 29 H 1.08998 * 109.47223 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47519 * 239.99900 * 2 1 3 31 31 H 1.09008 * 109.46977 * 59.99621 * 3 2 1 32 32 H 1.08993 * 109.47593 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.46643 * 300.00358 * 3 2 1 34 34 H 0.97000 * 120.00109 * 265.00822 * 6 4 2 35 35 H 1.08997 * 109.47460 * 300.00441 * 9 7 6 36 36 H 1.08996 * 109.46955 * 60.00217 * 9 7 6 37 37 H 1.09002 * 109.47688 * 300.00079 * 10 9 7 38 38 H 1.09003 * 109.47382 * 60.00024 * 10 9 7 39 39 H 1.08993 * 109.47286 * 300.00060 * 11 10 9 40 40 H 1.09000 * 109.46331 * 60.00353 * 11 10 9 41 41 H 1.08998 * 109.47464 * 299.99668 * 12 11 10 42 42 H 1.08996 * 109.47364 * 60.00484 * 12 11 10 43 43 H 0.96998 * 119.99779 * 180.02562 * 16 15 13 44 44 H 1.08001 * 119.99730 * 359.97438 * 22 21 4 45 45 H 1.08000 * 120.00376 * 179.97438 * 23 22 21 46 46 H 1.08000 * 120.00616 * 179.72578 * 24 23 22 47 47 H 1.08001 * 120.00299 * 179.97438 * 25 24 23 48 48 H 1.07997 * 120.00455 * 0.02562 * 26 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 3.1263 -0.6444 1.2952 6 7 1.6524 -2.1328 1.1906 7 6 2.4222 -3.0159 0.5242 8 8 3.4360 -2.6419 -0.0266 9 6 2.0232 -4.4678 0.4634 10 6 3.0603 -5.2482 -0.3466 11 6 2.6556 -6.7225 -0.4078 12 6 3.6932 -7.5029 -1.2174 13 6 3.2942 -8.9549 -1.2781 14 1 2.3908 -9.2877 -0.7887 15 6 4.0820 -9.8584 -1.9595 16 7 5.1818 -9.4531 -2.5559 17 14 3.5878 -11.6583 -2.0342 18 1 2.3190 -11.8547 -1.2880 19 1 3.3956 -12.0605 -3.4508 20 1 4.6555 -12.4905 -1.4238 21 6 1.4391 -0.0859 2.4766 22 6 2.1769 0.8171 3.2190 23 6 1.6255 1.4002 4.3445 24 6 0.3361 1.0810 4.7272 25 6 -0.4021 0.1791 3.9840 26 6 0.1500 -0.4058 2.8597 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.6767 1.9564 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 0.8417 -2.4319 1.6314 35 1 1.9720 -4.8732 1.4739 36 1 1.0472 -4.5568 -0.0136 37 1 3.1120 -4.8430 -1.3572 38 1 4.0362 -5.1592 0.1307 39 1 2.6044 -7.1274 0.6028 40 1 1.6797 -6.8117 -0.8850 41 1 3.7449 -7.0982 -2.2281 42 1 4.6688 -7.4136 -0.7398 43 1 5.7358 -10.0887 -3.0356 44 1 3.1840 1.0670 2.9197 45 1 2.2020 2.1055 4.9249 46 1 -0.0932 1.5332 5.6091 47 1 -1.4094 -0.0707 4.2831 48 1 -0.4264 -1.1113 2.2797 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588460110.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:48:46 Heat of formation + Delta-G solvation = -49.429285 kcal Electronic energy + Delta-G solvation = -24141.997224 eV Core-core repulsion = 20774.304803 eV Total energy + Delta-G solvation = -3367.692421 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 9.49 seconds Orbital eigenvalues (eV) -40.68324 -39.15943 -36.73116 -34.83032 -33.46476 -32.56092 -31.43891 -31.13152 -29.68134 -27.47010 -26.67451 -25.13533 -23.03327 -22.39631 -22.11444 -20.40324 -19.93736 -19.66679 -17.65356 -16.61401 -16.24368 -16.05453 -15.80054 -15.49365 -15.34811 -14.63753 -14.40882 -14.38613 -13.86731 -13.64591 -13.61481 -13.35240 -12.87983 -12.58321 -12.49396 -12.27073 -12.21771 -11.81156 -11.66214 -11.54984 -11.49950 -11.31953 -11.21896 -10.97664 -10.76321 -10.50859 -10.46660 -10.38456 -9.80009 -9.58839 -9.28200 -9.23105 -9.15783 -9.00126 -8.93026 -8.28951 -5.93537 -3.95841 0.95843 1.03432 2.75603 3.10767 3.34296 3.41396 3.45336 3.45952 4.24357 4.50182 4.50530 4.60810 4.67019 4.73156 4.82054 4.88341 4.95391 5.11250 5.16244 5.33810 5.39670 5.40056 5.42108 5.44590 5.49105 5.58301 5.61465 5.64731 5.70262 5.87953 5.89134 6.00748 6.05390 6.11960 6.15725 6.16971 6.17458 6.33637 6.44233 6.58384 6.61869 6.87234 7.05249 7.22813 7.45723 7.76617 7.92662 8.08250 8.29600 8.50108 9.12148 9.67703 11.17844 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.026591 B = 0.002212 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.730041 B =12655.485289 C =13048.800017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.103 4.103 3 C -0.146 4.146 4 C 0.189 3.811 5 H 0.095 0.905 6 N -0.732 5.732 7 C 0.514 3.486 8 O -0.534 6.534 9 C -0.139 4.139 10 C -0.103 4.103 11 C -0.110 4.110 12 C 0.019 3.981 13 C -0.519 4.519 14 H 0.055 0.945 15 C 0.054 3.946 16 N -0.895 5.895 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.083 4.083 22 C -0.107 4.107 23 C -0.118 4.118 24 C -0.121 4.121 25 C -0.119 4.119 26 C -0.112 4.112 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.398 0.602 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.259 0.741 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.121 0.879 47 H 0.122 0.878 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.581 25.664 13.504 31.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.122 4.122 3 C -0.204 4.204 4 C 0.084 3.916 5 H 0.113 0.887 6 N -0.385 5.385 7 C 0.301 3.699 8 O -0.409 6.409 9 C -0.179 4.179 10 C -0.141 4.141 11 C -0.148 4.148 12 C -0.018 4.018 13 C -0.557 4.557 14 H 0.073 0.927 15 C -0.147 4.147 16 N -0.535 5.535 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.083 4.083 22 C -0.125 4.125 23 C -0.136 4.136 24 C -0.139 4.139 25 C -0.137 4.137 26 C -0.131 4.131 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.233 0.767 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.069 0.931 44 H 0.141 0.859 45 H 0.140 0.860 46 H 0.139 0.861 47 H 0.140 0.860 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.682 25.850 12.989 31.200 hybrid contribution -0.639 -1.132 0.156 1.309 sum -12.322 24.719 13.145 30.588 Atomic orbital electron populations 1.22013 0.95116 1.01719 1.02047 1.21447 0.96309 0.96489 0.97966 1.21818 1.01195 0.95393 1.01944 1.19838 0.99937 0.80325 0.91496 0.88691 1.46232 1.28129 1.07704 1.56456 1.21099 0.83053 0.88487 0.77232 1.90702 1.25335 1.80321 1.44549 1.21798 1.02206 0.90602 1.03290 1.21445 0.97292 0.95720 0.99612 1.21648 1.00319 0.92441 1.00366 1.19103 0.93696 0.94018 0.94973 1.21325 1.08216 0.93479 1.32686 0.92718 1.25052 0.95095 0.98840 0.95667 1.69986 1.14055 1.34481 1.34949 0.86558 0.78467 0.85415 0.77675 1.19790 1.21068 1.21058 1.19891 0.94611 0.97790 0.96024 1.21028 0.99822 0.96791 0.94889 1.21144 0.95622 0.99980 0.96862 1.21174 0.94717 0.98244 0.99810 1.21141 1.00019 0.97262 0.95274 1.21001 0.94855 1.00243 0.96951 0.91939 0.92739 0.92678 0.90069 0.92415 0.92450 0.92453 0.76717 0.89189 0.89193 0.91815 0.91823 0.93506 0.93509 0.96592 0.96588 0.93118 0.85861 0.85972 0.86144 0.85968 0.85962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 7.84 37.16 0.29 -0.92 16 2 C -0.10 -0.96 2.87 -90.62 -0.26 -1.22 16 3 C -0.15 -1.19 8.91 37.16 0.33 -0.86 16 4 C 0.19 1.85 2.02 -69.08 -0.14 1.71 16 5 H 0.10 1.12 7.44 -51.93 -0.39 0.73 16 6 N -0.73 -7.48 4.48 -54.93 -0.25 -7.72 16 7 C 0.51 7.12 7.79 -10.98 -0.09 7.04 16 8 O -0.53 -9.59 15.64 5.56 0.09 -9.51 16 9 C -0.14 -1.86 5.70 -27.88 -0.16 -2.02 16 10 C -0.10 -1.86 4.50 -26.73 -0.12 -1.98 16 11 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 12 C 0.02 0.51 4.97 -27.88 -0.14 0.38 16 13 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 14 H 0.05 1.53 7.74 -52.48 -0.41 1.13 16 15 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -27.73 13.29 55.43 0.74 -27.00 16 17 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 18 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 21 C -0.08 -0.69 3.86 -104.62 -0.40 -1.09 16 22 C -0.11 -0.84 8.76 -39.59 -0.35 -1.19 16 23 C -0.12 -0.82 10.05 -39.59 -0.40 -1.22 16 24 C -0.12 -0.80 10.05 -39.58 -0.40 -1.20 16 25 C -0.12 -0.80 10.05 -39.58 -0.40 -1.19 16 26 C -0.11 -0.82 6.70 -39.58 -0.27 -1.08 16 27 H 0.06 0.47 5.65 -51.93 -0.29 0.17 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.43 7.58 -51.93 -0.39 0.04 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.44 6.76 -51.92 -0.35 0.09 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.40 3.09 6.87 -40.82 -0.28 2.81 16 35 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 38 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.12 0.87 8.04 -52.49 -0.42 0.45 16 45 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 46 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 47 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 48 H 0.12 0.74 6.06 -52.49 -0.32 0.42 16 LS Contribution 384.31 15.07 5.79 5.79 Total: -1.00 -33.75 384.31 -10.01 -43.77 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -8.32 Total: -1.20 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: -3.04 Total: -21.17 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.49 Total: -34.72 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.75 -10.01 -43.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588460110.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.661 kcal (2) G-P(sol) polarization free energy of solvation -33.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.49 seconds