Wall clock time and date at job start Tue Mar 31 2020 09:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47189 * 2 1 4 4 C 1.53008 * 109.46930 * 119.99805 * 2 1 3 5 5 N 1.46502 * 109.46801 * 63.85655 * 4 2 1 6 6 C 1.34774 * 119.99814 * 86.93758 * 5 4 2 7 7 O 1.21289 * 119.99917 * 184.66081 * 6 5 4 8 8 C 1.50698 * 120.00311 * 4.66280 * 6 5 4 9 9 C 1.52998 * 109.47599 * 185.03358 * 8 6 5 10 10 C 1.52998 * 109.47204 * 180.02562 * 9 8 6 11 11 C 1.53003 * 109.46879 * 179.97438 * 10 9 8 12 12 C 1.50704 * 109.46941 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00302 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99720 * 180.02562 * 12 11 10 15 15 N 1.31507 * 120.00230 * 359.97438 * 14 12 11 16 16 Si 1.86808 * 119.99784 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46720 * 89.99783 * 16 14 12 18 18 H 1.48503 * 109.47077 * 209.99788 * 16 14 12 19 19 H 1.48494 * 109.47111 * 330.00222 * 16 14 12 20 20 C 1.39928 * 120.00271 * 266.93563 * 5 4 2 21 21 C 1.38873 * 120.06919 * 173.71217 * 20 5 4 22 22 C 1.38113 * 119.92165 * 179.97438 * 21 20 5 23 23 C 1.38281 * 120.07637 * 359.97438 * 22 21 20 24 24 C 1.38283 * 120.13845 * 0.03970 * 23 22 21 25 25 C 1.38105 * 120.07190 * 359.96130 * 24 23 22 26 26 H 1.08995 * 109.46610 * 63.49759 * 1 2 3 27 27 H 1.08999 * 109.47234 * 183.50296 * 1 2 3 28 28 H 1.09006 * 109.46799 * 303.50207 * 1 2 3 29 29 H 1.08995 * 109.46662 * 239.99516 * 2 1 3 30 30 H 1.08999 * 109.46751 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.46839 * 299.99941 * 3 2 1 32 32 H 1.09005 * 109.46997 * 60.00240 * 3 2 1 33 33 H 1.09001 * 109.47104 * 303.86241 * 4 2 1 34 34 H 1.09000 * 109.47052 * 183.85615 * 4 2 1 35 35 H 1.08997 * 109.47050 * 305.03623 * 8 6 5 36 36 H 1.09009 * 109.46808 * 65.03228 * 8 6 5 37 37 H 1.09005 * 109.46917 * 299.99943 * 9 8 6 38 38 H 1.09000 * 109.47229 * 59.99795 * 9 8 6 39 39 H 1.08997 * 109.47214 * 300.00123 * 10 9 8 40 40 H 1.09004 * 109.47185 * 60.00695 * 10 9 8 41 41 H 1.09005 * 109.47098 * 299.99812 * 11 10 9 42 42 H 1.08995 * 109.47197 * 60.00298 * 11 10 9 43 43 H 0.97009 * 119.99962 * 179.97438 * 15 14 12 44 44 H 1.07997 * 120.03877 * 359.70074 * 21 20 5 45 45 H 1.08008 * 119.95860 * 179.97438 * 22 21 20 46 46 H 1.07997 * 119.92658 * 180.02562 * 23 22 21 47 47 H 1.08002 * 119.96188 * 179.97438 * 24 23 22 48 48 H 1.08000 * 120.03783 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6290 -2.1267 1.2038 6 6 2.3981 -3.0335 0.5693 7 8 2.0177 -4.1798 0.4582 8 6 3.7309 -2.6233 -0.0020 9 6 4.3392 -3.7974 -0.7715 10 6 5.6926 -3.3810 -1.3510 11 6 6.3012 -4.5554 -2.1200 12 6 7.6346 -4.1455 -2.6902 13 1 8.0102 -3.1471 -2.5214 14 6 8.3745 -5.0448 -3.4283 15 7 7.9169 -6.2604 -3.6344 16 14 10.0270 -4.5365 -4.1358 17 1 11.0996 -4.8389 -3.1543 18 1 10.2796 -5.2870 -5.3921 19 1 10.0154 -3.0797 -4.4232 20 6 0.4378 -2.5276 1.8189 21 6 -0.0198 -3.8299 1.6668 22 6 -1.1956 -4.2225 2.2757 23 6 -1.9167 -3.3207 3.0367 24 6 -1.4637 -2.0231 3.1898 25 6 -0.2887 -1.6242 2.5835 26 1 -0.3632 0.4586 -0.9197 27 1 -0.3633 -1.0257 0.0628 28 1 -0.3633 0.5673 0.8570 29 1 1.8933 -0.5139 -0.8899 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9563 0.8901 33 1 1.6213 -0.2489 2.1380 34 1 3.1278 -0.6618 1.2846 35 1 3.5924 -1.7790 -0.6773 36 1 4.4002 -2.3343 0.8085 37 1 4.4778 -4.6417 -0.0962 38 1 3.6700 -4.0864 -1.5819 39 1 5.5545 -2.5366 -2.0262 40 1 6.3617 -3.0925 -0.5402 41 1 6.4394 -5.3996 -1.4444 42 1 5.6324 -4.8445 -2.9306 43 1 8.4373 -6.8930 -4.1540 44 1 0.5407 -4.5336 1.0693 45 1 -1.5524 -5.2351 2.1574 46 1 -2.8356 -3.6304 3.5121 47 1 -2.0293 -1.3210 3.7845 48 1 0.0647 -0.6108 2.7039 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588751381.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:21:42 Heat of formation + Delta-G solvation = -24.481976 kcal Electronic energy + Delta-G solvation = -24691.546434 eV Core-core repulsion = 21324.935809 eV Total energy + Delta-G solvation = -3366.610625 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.19533 -38.53358 -37.24615 -35.05656 -34.18188 -32.70712 -30.97697 -30.71594 -29.17299 -27.41905 -26.71432 -25.72900 -23.40934 -22.60516 -21.70942 -20.66228 -20.04166 -19.37235 -17.78237 -17.22746 -16.20339 -16.15869 -15.91264 -15.31947 -14.82988 -14.62181 -14.40098 -14.37841 -13.89067 -13.77028 -13.44380 -13.16799 -12.95635 -12.63837 -12.49959 -12.28249 -12.24055 -11.93307 -11.71221 -11.64286 -11.61677 -11.37966 -11.20515 -11.04324 -10.91212 -10.55556 -10.50764 -10.43959 -10.28099 -9.63620 -9.40185 -9.16259 -9.00417 -8.98516 -8.31373 -7.99735 -5.96060 -3.98658 1.19820 1.35297 2.53919 2.62618 3.33397 3.39533 3.42493 3.77249 4.26421 4.41219 4.48644 4.50297 4.70762 4.78677 4.86426 4.98901 5.07452 5.13603 5.22289 5.28822 5.30840 5.33608 5.38108 5.39463 5.43859 5.52208 5.57565 5.61905 5.72388 5.80989 5.93340 6.00364 6.03088 6.08516 6.15602 6.25045 6.32564 6.45435 6.49672 6.55828 6.79762 6.96729 7.07259 7.15607 7.21292 7.72882 7.88472 8.03648 8.05373 8.46703 9.08994 9.65101 11.15260 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.020248 B = 0.002741 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.494897 B =10211.808756 C =11318.448590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.145 4.145 4 C 0.101 3.899 5 N -0.555 5.555 6 C 0.515 3.485 7 O -0.507 6.507 8 C -0.137 4.137 9 C -0.105 4.105 10 C -0.109 4.109 11 C 0.020 3.980 12 C -0.520 4.520 13 H 0.054 0.946 14 C 0.055 3.945 15 N -0.895 5.895 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.160 3.840 21 C -0.173 4.173 22 C -0.098 4.098 23 C -0.153 4.153 24 C -0.100 4.100 25 C -0.164 4.164 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.260 0.740 44 H 0.184 0.816 45 H 0.122 0.878 46 H 0.117 0.883 47 H 0.120 0.880 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.034 14.685 13.565 27.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.136 4.136 3 C -0.203 4.203 4 C -0.021 4.021 5 N -0.277 5.277 6 C 0.307 3.693 7 O -0.383 6.383 8 C -0.177 4.177 9 C -0.143 4.143 10 C -0.147 4.147 11 C -0.017 4.017 12 C -0.559 4.559 13 H 0.072 0.928 14 C -0.145 4.145 15 N -0.534 5.534 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C 0.066 3.934 21 C -0.192 4.192 22 C -0.116 4.116 23 C -0.172 4.172 24 C -0.119 4.119 25 C -0.184 4.184 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.200 0.800 45 H 0.140 0.860 46 H 0.135 0.865 47 H 0.138 0.862 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -19.090 13.923 13.368 27.148 hybrid contribution 0.814 0.392 -0.320 0.959 sum -18.276 14.316 13.048 26.630 Atomic orbital electron populations 1.21931 0.94600 1.02372 1.01689 1.21588 0.96919 0.96748 0.98363 1.21782 1.01428 0.94898 1.02221 1.21967 1.01220 0.79562 0.99383 1.45703 1.20469 1.09405 1.52110 1.21358 0.86664 0.84570 0.76741 1.90337 1.71849 1.19831 1.56267 1.21905 0.92177 1.02237 1.01380 1.21493 0.97809 0.95695 0.99264 1.21641 0.93448 1.00589 0.99022 1.19093 0.95119 0.92600 0.94890 1.21274 1.03790 0.98322 1.32491 0.92764 1.25038 0.98051 0.95019 0.96441 1.69972 1.38192 1.04896 1.40386 0.86618 0.84383 0.78550 0.78576 1.20696 1.21246 1.19924 1.18042 0.86650 0.94114 0.94628 1.22861 0.97535 0.96458 1.02322 1.21200 0.94604 0.99446 0.96395 1.21106 1.00691 0.94057 1.01348 1.20845 0.95707 0.96171 0.99152 1.20838 0.97119 0.99354 1.01132 0.92652 0.92166 0.92607 0.90365 0.92064 0.92062 0.92509 0.89322 0.89001 0.88875 0.88639 0.91531 0.91770 0.93450 0.93432 0.96574 0.96588 0.93028 0.80026 0.86027 0.86534 0.86186 0.85848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 7.90 37.16 0.29 -0.92 16 2 C -0.12 -0.90 3.03 -90.61 -0.27 -1.18 16 3 C -0.15 -0.89 9.19 37.16 0.34 -0.55 16 4 C 0.10 0.81 4.35 -4.04 -0.02 0.79 16 5 N -0.55 -6.31 2.48 -113.45 -0.28 -6.59 16 6 C 0.52 7.18 7.60 -10.99 -0.08 7.10 16 7 O -0.51 -8.69 12.38 5.55 0.07 -8.62 16 8 C -0.14 -1.78 4.16 -27.89 -0.12 -1.89 16 9 C -0.10 -1.81 4.52 -26.73 -0.12 -1.93 16 10 C -0.11 -2.20 5.15 -26.73 -0.14 -2.34 16 11 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 12 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 13 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 16 Si 0.89 21.82 29.54 -169.99 -5.02 16.79 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 19 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 20 C 0.16 1.93 5.07 -83.69 -0.42 1.51 16 21 C -0.17 -2.32 9.05 -39.39 -0.36 -2.68 16 22 C -0.10 -1.11 10.04 -39.61 -0.40 -1.51 16 23 C -0.15 -1.49 10.04 -39.55 -0.40 -1.89 16 24 C -0.10 -0.92 10.04 -39.61 -0.40 -1.31 16 25 C -0.16 -1.60 7.70 -39.39 -0.30 -1.91 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.62 5.99 -51.93 -0.31 0.31 16 28 H 0.05 0.39 7.54 -51.93 -0.39 0.00 16 29 H 0.08 0.71 7.18 -51.93 -0.37 0.34 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.09 0.58 5.84 -51.93 -0.30 0.28 16 34 H 0.09 0.64 6.69 -51.93 -0.35 0.29 16 35 H 0.09 1.04 6.83 -51.93 -0.35 0.68 16 36 H 0.10 1.07 7.80 -51.92 -0.41 0.66 16 37 H 0.07 1.23 8.05 -51.93 -0.42 0.82 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.18 2.85 4.53 -56.25 -0.25 2.60 16 45 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 46 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 47 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 48 H 0.12 0.95 5.34 -52.49 -0.28 0.67 16 LS Contribution 375.67 15.07 5.66 5.66 Total: -1.00 -32.66 375.67 -9.83 -42.49 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -8.05 Total: -1.02 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: -2.94 Total: -22.01 kcal Atomic # 7 Polarization: -33.75 SS G_CDS: 0.45 Total: -33.29 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.07 Total: -8.62 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.66 -9.83 -42.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588751381.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.008 kcal (2) G-P(sol) polarization free energy of solvation -32.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds