Wall clock time and date at job start Tue Mar 31 2020 09:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47189 * 2 1 4 4 C 1.53008 * 109.46930 * 119.99805 * 2 1 3 5 5 N 1.46502 * 109.46801 * 63.85655 * 4 2 1 6 6 C 1.34774 * 119.99814 * 86.93758 * 5 4 2 7 7 O 1.21289 * 119.99917 * 184.66081 * 6 5 4 8 8 C 1.50698 * 120.00311 * 4.66280 * 6 5 4 9 9 C 1.52998 * 109.47599 * 185.03358 * 8 6 5 10 10 C 1.52998 * 109.47204 * 180.02562 * 9 8 6 11 11 C 1.53003 * 109.46879 * 179.97438 * 10 9 8 12 12 C 1.50704 * 109.46941 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00302 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99720 * 180.02562 * 12 11 10 15 15 N 1.31507 * 120.00230 * 359.97438 * 14 12 11 16 16 Si 1.86808 * 119.99784 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46720 * 89.99783 * 16 14 12 18 18 H 1.48503 * 109.47077 * 209.99788 * 16 14 12 19 19 H 1.48494 * 109.47111 * 330.00222 * 16 14 12 20 20 C 1.39928 * 120.00271 * 266.93563 * 5 4 2 21 21 C 1.38873 * 120.06919 * 173.71217 * 20 5 4 22 22 C 1.38113 * 119.92165 * 179.97438 * 21 20 5 23 23 C 1.38281 * 120.07637 * 359.97438 * 22 21 20 24 24 C 1.38283 * 120.13845 * 0.03970 * 23 22 21 25 25 C 1.38105 * 120.07190 * 359.96130 * 24 23 22 26 26 H 1.08995 * 109.46610 * 63.49759 * 1 2 3 27 27 H 1.08999 * 109.47234 * 183.50296 * 1 2 3 28 28 H 1.09006 * 109.46799 * 303.50207 * 1 2 3 29 29 H 1.08995 * 109.46662 * 239.99516 * 2 1 3 30 30 H 1.08999 * 109.46751 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.46839 * 299.99941 * 3 2 1 32 32 H 1.09005 * 109.46997 * 60.00240 * 3 2 1 33 33 H 1.09001 * 109.47104 * 303.86241 * 4 2 1 34 34 H 1.09000 * 109.47052 * 183.85615 * 4 2 1 35 35 H 1.08997 * 109.47050 * 305.03623 * 8 6 5 36 36 H 1.09009 * 109.46808 * 65.03228 * 8 6 5 37 37 H 1.09005 * 109.46917 * 299.99943 * 9 8 6 38 38 H 1.09000 * 109.47229 * 59.99795 * 9 8 6 39 39 H 1.08997 * 109.47214 * 300.00123 * 10 9 8 40 40 H 1.09004 * 109.47185 * 60.00695 * 10 9 8 41 41 H 1.09005 * 109.47098 * 299.99812 * 11 10 9 42 42 H 1.08995 * 109.47197 * 60.00298 * 11 10 9 43 43 H 0.97009 * 119.99962 * 179.97438 * 15 14 12 44 44 H 1.07997 * 120.03877 * 359.70074 * 21 20 5 45 45 H 1.08008 * 119.95860 * 179.97438 * 22 21 20 46 46 H 1.07997 * 119.92658 * 180.02562 * 23 22 21 47 47 H 1.08002 * 119.96188 * 179.97438 * 24 23 22 48 48 H 1.08000 * 120.03783 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6290 -2.1267 1.2038 6 6 2.3981 -3.0335 0.5693 7 8 2.0177 -4.1798 0.4582 8 6 3.7309 -2.6233 -0.0020 9 6 4.3392 -3.7974 -0.7715 10 6 5.6926 -3.3810 -1.3510 11 6 6.3012 -4.5554 -2.1200 12 6 7.6346 -4.1455 -2.6902 13 1 8.0102 -3.1471 -2.5214 14 6 8.3745 -5.0448 -3.4283 15 7 7.9169 -6.2604 -3.6344 16 14 10.0270 -4.5365 -4.1358 17 1 11.0996 -4.8389 -3.1543 18 1 10.2796 -5.2870 -5.3921 19 1 10.0154 -3.0797 -4.4232 20 6 0.4378 -2.5276 1.8189 21 6 -0.0198 -3.8299 1.6668 22 6 -1.1956 -4.2225 2.2757 23 6 -1.9167 -3.3207 3.0367 24 6 -1.4637 -2.0231 3.1898 25 6 -0.2887 -1.6242 2.5835 26 1 -0.3632 0.4586 -0.9197 27 1 -0.3633 -1.0257 0.0628 28 1 -0.3633 0.5673 0.8570 29 1 1.8933 -0.5139 -0.8899 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9563 0.8901 33 1 1.6213 -0.2489 2.1380 34 1 3.1278 -0.6618 1.2846 35 1 3.5924 -1.7790 -0.6773 36 1 4.4002 -2.3343 0.8085 37 1 4.4778 -4.6417 -0.0962 38 1 3.6700 -4.0864 -1.5819 39 1 5.5545 -2.5366 -2.0262 40 1 6.3617 -3.0925 -0.5402 41 1 6.4394 -5.3996 -1.4444 42 1 5.6324 -4.8445 -2.9306 43 1 8.4373 -6.8930 -4.1540 44 1 0.5407 -4.5336 1.0693 45 1 -1.5524 -5.2351 2.1574 46 1 -2.8356 -3.6304 3.5121 47 1 -2.0293 -1.3210 3.7845 48 1 0.0647 -0.6108 2.7039 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588751381.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:21:41 Heat of formation + Delta-G solvation = -41.138085 kcal Electronic energy + Delta-G solvation = -24692.268697 eV Core-core repulsion = 21324.935809 eV Total energy + Delta-G solvation = -3367.332888 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.11650 -39.46261 -38.01649 -36.71255 -34.97938 -34.64905 -32.06883 -31.77776 -30.47131 -27.96868 -27.64960 -27.21770 -24.78200 -23.62835 -22.83978 -21.74749 -21.38439 -20.27562 -18.63616 -18.41186 -18.12700 -17.20352 -16.81358 -16.48339 -16.08456 -15.87714 -15.51756 -15.19627 -14.91573 -14.67609 -14.54221 -14.30077 -13.97421 -13.80827 -13.58077 -13.55692 -13.31101 -13.01589 -12.83655 -12.75598 -12.66536 -12.40625 -12.34125 -12.22488 -12.15454 -12.07449 -11.83210 -11.54254 -11.38264 -11.32686 -11.08614 -11.05397 -10.55188 -10.27296 -9.82252 -8.84826 -8.18810 -6.30925 0.35140 0.52371 1.40325 1.42551 1.53549 1.54715 1.75632 2.41790 2.95256 3.14134 3.36661 3.76405 3.89414 3.93755 4.01862 4.08530 4.13612 4.17183 4.30927 4.42364 4.53775 4.58717 4.59021 4.62607 4.65092 4.70400 4.74159 4.79701 4.85882 4.88222 5.01516 5.08154 5.15307 5.18618 5.27683 5.29167 5.34405 5.35828 5.39824 5.48496 5.55456 5.55977 5.65272 5.70782 5.77514 5.87826 6.20229 6.25037 6.31229 6.87691 7.03078 7.38816 8.93497 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.020248 B = 0.002741 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.494897 B =10211.808756 C =11318.448590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 C -0.141 4.141 4 C 0.093 3.907 5 N -0.547 5.547 6 C 0.508 3.492 7 O -0.552 6.552 8 C -0.125 4.125 9 C -0.096 4.096 10 C -0.094 4.094 11 C 0.019 3.981 12 C -0.541 4.541 13 H 0.067 0.933 14 C -0.007 4.007 15 N -0.939 5.939 16 Si 0.969 3.031 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.258 1.258 20 C 0.143 3.857 21 C -0.207 4.207 22 C -0.112 4.112 23 C -0.153 4.153 24 C -0.097 4.097 25 C -0.157 4.157 26 H 0.054 0.946 27 H 0.034 0.966 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.045 0.955 38 H 0.043 0.957 39 H 0.062 0.938 40 H 0.062 0.938 41 H -0.016 1.016 42 H -0.016 1.016 43 H 0.263 0.737 44 H 0.153 0.847 45 H 0.126 0.874 46 H 0.141 0.859 47 H 0.154 0.846 48 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.976 18.555 15.130 30.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.133 4.133 3 C -0.199 4.199 4 C -0.027 4.027 5 N -0.268 5.268 6 C 0.300 3.700 7 O -0.431 6.431 8 C -0.164 4.164 9 C -0.134 4.134 10 C -0.131 4.131 11 C -0.018 4.018 12 C -0.578 4.578 13 H 0.085 0.915 14 C -0.204 4.204 15 N -0.579 5.579 16 Si 0.793 3.207 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.182 1.182 20 C 0.049 3.951 21 C -0.226 4.226 22 C -0.130 4.130 23 C -0.172 4.172 24 C -0.115 4.115 25 C -0.177 4.177 26 H 0.073 0.927 27 H 0.053 0.947 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.136 0.864 36 H 0.141 0.859 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.002 0.998 42 H 0.003 0.997 43 H 0.071 0.929 44 H 0.169 0.831 45 H 0.144 0.856 46 H 0.159 0.841 47 H 0.172 0.828 48 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -19.048 17.844 14.954 30.081 hybrid contribution 0.686 -0.842 -0.782 1.338 sum -18.362 17.002 14.172 28.759 Atomic orbital electron populations 1.21904 0.95007 1.00951 1.02475 1.21550 0.96545 0.97758 0.97466 1.21751 1.01760 0.93438 1.02916 1.22309 1.02474 0.77554 1.00412 1.45701 1.19846 1.10304 1.50954 1.21517 0.87187 0.84405 0.76886 1.90370 1.72855 1.21796 1.58120 1.21773 0.91986 1.00565 1.02107 1.21264 0.96372 0.97092 0.98676 1.21428 0.94529 0.98196 0.98977 1.19051 0.94697 0.94106 0.93962 1.21753 1.04603 0.98944 1.32543 0.91493 1.26091 1.02601 0.94882 0.96840 1.70133 1.40136 1.06333 1.41304 0.85395 0.78812 0.78861 0.77661 1.19714 1.21010 1.18224 1.18209 0.87272 0.94098 0.95570 1.22711 0.98806 0.97313 1.03801 1.21348 0.94378 1.00388 0.96930 1.21431 1.01161 0.94154 1.00455 1.21300 0.95407 0.96373 0.98464 1.21131 0.96820 0.99934 0.99822 0.92737 0.94719 0.90850 0.92155 0.91507 0.92261 0.90959 0.87114 0.87368 0.86390 0.85924 0.93616 0.93804 0.91973 0.91944 0.99753 0.99745 0.92872 0.83058 0.85578 0.84080 0.82803 0.83189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 7.90 71.98 0.57 -1.53 16 2 C -0.11 -1.49 3.03 -10.79 -0.03 -1.53 16 3 C -0.14 -1.25 9.19 71.98 0.66 -0.59 16 4 C 0.09 1.23 4.35 86.38 0.38 1.60 16 5 N -0.55 -12.05 2.48 -631.23 -1.57 -13.62 16 6 C 0.51 14.49 7.60 87.66 0.67 15.16 16 7 O -0.55 -20.52 12.38 -3.06 -0.04 -20.56 16 8 C -0.13 -3.13 4.16 29.85 0.12 -3.00 16 9 C -0.10 -3.44 4.52 30.59 0.14 -3.30 16 10 C -0.09 -3.78 5.15 30.59 0.16 -3.62 16 11 C 0.02 1.04 4.97 29.85 0.15 1.19 16 12 C -0.54 -31.24 9.11 25.60 0.23 -31.01 16 13 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 14 C -0.01 -0.41 5.46 84.66 0.46 0.05 16 15 N -0.94 -59.24 13.29 21.45 0.28 -58.96 16 16 Si 0.97 44.74 29.54 68.60 2.03 46.76 16 17 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 20 C 0.14 3.40 5.07 38.15 0.19 3.59 16 21 C -0.21 -5.91 9.05 22.39 0.20 -5.71 16 22 C -0.11 -2.61 10.04 22.25 0.22 -2.39 16 23 C -0.15 -2.72 10.04 22.29 0.22 -2.50 16 24 C -0.10 -1.48 10.04 22.25 0.22 -1.25 16 25 C -0.16 -2.67 7.70 22.39 0.17 -2.49 16 26 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.03 0.68 5.99 -2.39 -0.01 0.67 16 28 H 0.07 0.78 7.54 -2.38 -0.02 0.76 16 29 H 0.06 1.01 7.18 -2.39 -0.02 1.00 16 30 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 0.44 8.14 -2.38 -0.02 0.42 16 33 H 0.11 0.98 5.84 -2.39 -0.01 0.97 16 34 H 0.11 1.10 6.69 -2.39 -0.02 1.08 16 35 H 0.12 2.38 6.83 -2.39 -0.02 2.36 16 36 H 0.12 2.43 7.80 -2.38 -0.02 2.41 16 37 H 0.04 1.80 8.05 -2.38 -0.02 1.78 16 38 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.06 2.33 8.14 -2.38 -0.02 2.32 16 41 H -0.02 -0.96 8.14 -2.38 -0.02 -0.98 16 42 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 43 H 0.26 15.53 8.31 -92.70 -0.77 14.76 16 44 H 0.15 5.33 4.53 -62.49 -0.28 5.05 16 45 H 0.13 2.62 8.06 -2.91 -0.02 2.60 16 46 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 47 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 48 H 0.15 1.66 5.34 -2.91 -0.02 1.64 16 Total: -1.00 -75.61 375.67 6.10 -69.51 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 0.65 Total: 14.22 kcal Atomic # 6 Polarization: -42.09 SS G_CDS: 4.74 Total: -37.35 kcal Atomic # 7 Polarization: -71.29 SS G_CDS: -1.28 Total: -72.58 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.04 Total: -20.56 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -75.61 6.10 -69.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588751381.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.369 kcal (2) G-P(sol) polarization free energy of solvation -75.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds