Wall clock time and date at job start Tue Mar 31 2020 08:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47158 * 2 1 4 4 C 1.52998 * 109.47570 * 120.00097 * 2 1 3 5 5 H 1.09001 * 109.12555 * 325.86480 * 4 2 1 6 6 C 1.50628 * 109.29637 * 85.34994 * 4 2 1 7 7 C 1.38724 * 118.42099 * 317.73777 * 6 4 2 8 8 C 1.38017 * 120.38074 * 180.23549 * 7 6 4 9 9 C 1.38265 * 119.86519 * 359.97288 * 8 7 6 10 10 C 1.38034 * 119.82613 * 359.94885 * 9 8 7 11 11 C 1.37834 * 121.85027 * 137.81909 * 6 4 2 12 12 C 1.50719 * 121.66402 * 359.66424 * 11 6 4 13 13 C 1.52896 * 109.96727 * 16.77636 * 12 11 6 14 14 N 1.46632 * 109.30680 * 206.37739 * 4 2 1 15 15 C 1.46900 * 110.99849 * 310.54971 * 14 4 2 16 16 C 1.52998 * 109.47121 * 163.43621 * 15 14 4 17 17 O 1.42904 * 109.47397 * 66.14106 * 16 15 14 18 18 C 1.42898 * 114.00273 * 175.02951 * 17 16 15 19 19 C 1.50703 * 109.47079 * 184.91735 * 18 17 16 20 20 H 1.07995 * 120.00029 * 355.37123 * 19 18 17 21 21 C 1.37878 * 119.99768 * 175.36687 * 19 18 17 22 22 N 1.31512 * 119.99938 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 120.00226 * 0.02562 * 21 19 18 24 24 H 1.48493 * 109.47073 * 89.99321 * 23 21 19 25 25 H 1.48497 * 109.46938 * 209.99701 * 23 21 19 26 26 H 1.48501 * 109.46857 * 329.99666 * 23 21 19 27 27 H 1.08992 * 109.47053 * 293.73683 * 1 2 3 28 28 H 1.08995 * 109.47200 * 53.73896 * 1 2 3 29 29 H 1.09000 * 109.46780 * 173.73814 * 1 2 3 30 30 H 1.09000 * 109.47512 * 240.00119 * 2 1 3 31 31 H 1.09000 * 109.47407 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47183 * 300.00151 * 3 2 1 33 33 H 1.09000 * 109.46811 * 59.99690 * 3 2 1 34 34 H 1.08002 * 119.81159 * 0.20903 * 7 6 4 35 35 H 1.07997 * 120.07000 * 180.02562 * 8 7 6 36 36 H 1.07990 * 120.08491 * 179.89313 * 9 8 7 37 37 H 1.08001 * 119.82570 * 180.02562 * 10 9 8 38 38 H 1.08996 * 109.39118 * 256.62536 * 12 11 6 39 39 H 1.09000 * 109.38471 * 136.92633 * 12 11 6 40 40 H 1.08997 * 109.63399 * 189.95915 * 13 12 11 41 41 H 1.09003 * 109.78937 * 69.46478 * 13 12 11 42 42 H 1.08997 * 109.47413 * 43.43221 * 15 14 4 43 43 H 1.09001 * 109.46795 * 283.42989 * 15 14 4 44 44 H 1.08999 * 109.47041 * 306.14279 * 16 15 14 45 45 H 1.09002 * 109.47646 * 186.14258 * 16 15 14 46 46 H 1.08998 * 109.47202 * 304.92029 * 18 17 16 47 47 H 1.09003 * 109.46881 * 64.91627 * 18 17 16 48 48 H 0.96995 * 120.00457 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.3555 -0.5312 2.0758 6 6 2.0974 -2.2022 0.9804 7 6 1.0445 -2.7900 0.2944 8 6 1.0530 -4.1447 0.0305 9 6 2.1167 -4.9214 0.4512 10 6 3.1658 -4.3379 1.1324 11 6 3.1587 -2.9766 1.3972 12 6 4.3276 -2.3827 2.1404 13 6 3.9529 -1.0051 2.6878 14 7 3.3706 -0.2107 1.5945 15 6 4.2531 -0.2046 0.4201 16 6 5.4614 0.6928 0.6949 17 8 6.2563 0.1168 1.7334 18 6 7.4731 0.8201 1.9921 19 6 8.2834 0.0634 3.0128 20 1 7.8751 -0.8215 3.4782 21 6 9.5461 0.5008 3.3523 22 7 10.2531 -0.1592 4.2434 23 14 10.2521 2.0317 2.5478 24 1 9.8918 3.2256 3.3540 25 1 11.7304 1.9137 2.4712 26 1 9.6952 2.1728 1.1784 27 1 -0.3633 0.4136 0.9407 28 1 -0.3633 0.6078 -0.8286 29 1 -0.3633 -1.0215 -0.1121 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 0.2132 -2.1841 -0.0347 35 1 0.2309 -4.5969 -0.5043 36 1 2.1262 -5.9820 0.2481 37 1 3.9969 -4.9445 1.4607 38 1 5.1753 -2.2842 1.4624 39 1 4.6016 -3.0382 2.9671 40 1 4.8448 -0.5069 3.0676 41 1 3.2236 -1.1129 3.4907 42 1 3.7069 0.1757 -0.4430 43 1 4.5935 -1.2198 0.2163 44 1 5.1180 1.6797 1.0053 45 1 6.0595 0.7848 -0.2117 46 1 8.0445 0.9095 1.0682 47 1 7.2435 1.8145 2.3750 48 1 11.1413 0.1486 4.4826 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590162342.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:32:00 Heat of formation + Delta-G solvation = 4.800733 kcal Electronic energy + Delta-G solvation = -26112.810301 eV Core-core repulsion = 22747.469470 eV Total energy + Delta-G solvation = -3365.340831 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 9.12 seconds Orbital eigenvalues (eV) -40.93979 -37.91065 -36.64180 -35.31903 -32.72058 -31.81753 -31.33503 -29.37295 -28.90497 -27.62463 -26.90187 -24.32146 -23.42225 -22.21029 -21.81356 -21.75466 -20.19867 -18.69939 -16.88484 -16.75065 -16.42638 -16.03382 -15.33979 -15.10302 -14.87951 -14.60608 -14.40272 -14.21968 -13.81626 -13.41261 -13.15802 -12.77801 -12.62834 -12.51693 -12.27979 -12.23459 -12.07519 -11.93801 -11.67374 -11.54236 -11.44227 -11.16341 -10.94948 -10.83688 -10.67332 -10.51517 -10.49721 -10.32761 -9.98371 -9.84152 -9.15558 -8.80444 -8.72769 -8.50780 -8.42251 -8.01466 -6.11634 -4.10405 1.37218 1.41211 3.25190 3.32244 3.33386 3.75905 4.12581 4.35810 4.62678 4.69969 4.74359 4.76766 4.90592 4.95896 5.01749 5.19396 5.20658 5.33779 5.39874 5.44926 5.50231 5.60947 5.61892 5.65281 5.74501 5.78098 5.81076 5.85198 5.93982 5.97129 6.02063 6.04162 6.10291 6.17703 6.21684 6.29309 6.44969 6.46991 6.53721 6.57950 6.62857 6.73715 6.81222 7.03126 7.06364 7.31464 7.38807 7.61597 8.03621 8.67267 8.99119 9.48291 11.01329 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.018933 B = 0.003983 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.529060 B = 7028.539102 C = 8126.639021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.089 4.089 3 C -0.155 4.155 4 C 0.124 3.876 5 H 0.091 0.909 6 C -0.108 4.108 7 C -0.132 4.132 8 C -0.132 4.132 9 C -0.123 4.123 10 C -0.122 4.122 11 C -0.066 4.066 12 C -0.118 4.118 13 C 0.052 3.948 14 N -0.510 5.510 15 C 0.032 3.968 16 C 0.063 3.937 17 O -0.375 6.375 18 C 0.166 3.834 19 C -0.516 4.516 20 H 0.082 0.918 21 C 0.072 3.928 22 N -0.896 5.896 23 Si 0.874 3.126 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.266 1.266 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.043 0.957 33 H 0.058 0.942 34 H 0.137 0.863 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.118 0.882 41 H 0.063 0.937 42 H 0.096 0.904 43 H 0.049 0.951 44 H 0.047 0.953 45 H 0.039 0.961 46 H 0.002 0.998 47 H -0.002 1.002 48 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.297 -2.941 -10.048 22.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.107 4.107 3 C -0.212 4.212 4 C 0.015 3.985 5 H 0.109 0.891 6 C -0.110 4.110 7 C -0.150 4.150 8 C -0.150 4.150 9 C -0.141 4.141 10 C -0.140 4.140 11 C -0.067 4.067 12 C -0.156 4.156 13 C -0.076 4.076 14 N -0.231 5.231 15 C -0.095 4.095 16 C -0.015 4.015 17 O -0.294 6.294 18 C 0.091 3.909 19 C -0.554 4.554 20 H 0.100 0.900 21 C -0.129 4.129 22 N -0.535 5.535 23 Si 0.701 3.299 24 H -0.200 1.200 25 H -0.209 1.209 26 H -0.191 1.191 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.154 0.846 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.138 0.862 38 H 0.111 0.889 39 H 0.095 0.905 40 H 0.136 0.864 41 H 0.081 0.919 42 H 0.113 0.887 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.057 0.943 46 H 0.019 0.981 47 H 0.016 0.984 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -20.193 -2.583 -9.667 22.536 hybrid contribution 0.674 -0.078 -0.783 1.036 sum -19.520 -2.660 -10.450 22.300 Atomic orbital electron populations 1.22239 0.95207 1.01788 1.02167 1.21228 0.95515 0.97084 0.96917 1.22164 1.03520 0.94504 1.01006 1.20762 0.92599 0.87516 0.97670 0.89105 1.20421 0.94546 0.97205 0.98813 1.21725 0.99014 0.95137 0.99133 1.21046 0.98601 0.94224 1.01171 1.21065 0.94511 0.99547 0.98994 1.21156 0.98717 0.94574 0.99515 1.19854 0.95710 0.93388 0.97706 1.21121 0.95774 0.98376 1.00302 1.22410 1.01407 0.90963 0.92795 1.62815 1.01310 1.51069 1.07943 1.22656 0.93272 1.00013 0.93592 1.22363 0.91414 0.96349 0.91386 1.87889 1.34045 1.53816 1.53678 1.20605 0.82172 0.92480 0.95635 1.20883 0.99437 1.13272 1.21794 0.90020 1.24765 0.96407 0.96865 0.94899 1.69871 1.11672 1.39759 1.32188 0.86871 0.78629 0.83861 0.80510 1.19950 1.20905 1.19098 0.92301 0.92513 0.91639 0.91340 0.89867 0.93805 0.92293 0.84582 0.86603 0.86526 0.86224 0.88885 0.90450 0.86423 0.91888 0.88656 0.93241 0.93534 0.94254 0.98058 0.98426 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 8.85 37.16 0.33 -0.96 16 2 C -0.09 -0.90 1.54 -90.62 -0.14 -1.04 16 3 C -0.16 -1.62 8.18 37.16 0.30 -1.32 16 4 C 0.12 1.50 2.14 -69.05 -0.15 1.35 16 5 H 0.09 1.11 7.76 -51.93 -0.40 0.70 16 6 C -0.11 -1.38 4.98 -104.63 -0.52 -1.90 16 7 C -0.13 -1.48 8.90 -39.48 -0.35 -1.83 16 8 C -0.13 -1.42 10.05 -39.65 -0.40 -1.82 16 9 C -0.12 -1.40 10.05 -39.65 -0.40 -1.80 16 10 C -0.12 -1.58 9.66 -39.49 -0.38 -1.96 16 11 C -0.07 -0.93 5.18 -104.60 -0.54 -1.47 16 12 C -0.12 -1.81 5.12 -27.93 -0.14 -1.95 16 13 C 0.05 0.82 5.44 -3.74 -0.02 0.80 16 14 N -0.51 -7.26 4.05 -228.14 -0.92 -8.19 16 15 C 0.03 0.46 3.59 -3.83 -0.01 0.45 16 16 C 0.06 1.07 5.98 37.16 0.22 1.29 16 17 O -0.37 -8.12 7.13 -35.23 -0.25 -8.37 16 18 C 0.17 4.10 4.79 36.01 0.17 4.27 16 19 C -0.52 -14.90 9.99 -34.44 -0.34 -15.25 16 20 H 0.08 2.56 8.06 -52.49 -0.42 2.14 16 21 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 22 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 23 Si 0.87 21.28 27.56 -169.99 -4.69 16.59 16 24 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.27 -6.22 6.41 56.52 0.36 -5.86 16 27 H 0.06 0.48 7.97 -51.93 -0.41 0.06 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.50 4.57 -51.93 -0.24 0.26 16 30 H 0.07 0.73 7.18 -51.93 -0.37 0.36 16 31 H 0.08 0.98 4.00 -51.93 -0.21 0.77 16 32 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.14 1.25 3.89 -52.49 -0.20 1.04 16 35 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 38 H 0.09 1.61 6.26 -51.93 -0.32 1.29 16 39 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.12 2.25 5.85 -51.93 -0.30 1.94 16 41 H 0.06 0.94 8.05 -51.93 -0.42 0.52 16 42 H 0.10 1.20 4.20 -51.93 -0.22 0.98 16 43 H 0.05 0.79 5.15 -51.93 -0.27 0.52 16 44 H 0.05 0.78 7.89 -51.93 -0.41 0.37 16 45 H 0.04 0.64 8.12 -51.93 -0.42 0.22 16 46 H 0.00 0.04 6.85 -51.93 -0.36 -0.31 16 47 H 0.00 -0.05 7.80 -51.93 -0.41 -0.45 16 48 H 0.27 7.55 8.31 -40.82 -0.34 7.22 16 LS Contribution 351.86 15.07 5.30 5.30 Total: -1.00 -30.23 351.86 -9.78 -40.00 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -7.52 Total: 2.41 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: -2.47 Total: -21.14 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: -0.15 Total: -34.79 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: -0.25 Total: -8.37 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.69 Total: 16.59 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.23 -9.78 -40.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590162342.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.804 kcal (2) G-P(sol) polarization free energy of solvation -30.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.12 seconds