Wall clock time and date at job start Tue Mar 31 2020 08:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47158 * 2 1 4 4 C 1.52998 * 109.47570 * 120.00097 * 2 1 3 5 5 H 1.09001 * 109.12555 * 325.86480 * 4 2 1 6 6 C 1.50628 * 109.29637 * 85.34994 * 4 2 1 7 7 C 1.38724 * 118.42099 * 317.73777 * 6 4 2 8 8 C 1.38017 * 120.38074 * 180.23549 * 7 6 4 9 9 C 1.38265 * 119.86519 * 359.97288 * 8 7 6 10 10 C 1.38034 * 119.82613 * 359.94885 * 9 8 7 11 11 C 1.37834 * 121.85027 * 137.81909 * 6 4 2 12 12 C 1.50719 * 121.66402 * 359.66424 * 11 6 4 13 13 C 1.52896 * 109.96727 * 16.77636 * 12 11 6 14 14 N 1.46632 * 109.30680 * 206.37739 * 4 2 1 15 15 C 1.46900 * 110.99849 * 310.54971 * 14 4 2 16 16 C 1.52998 * 109.47121 * 163.43621 * 15 14 4 17 17 O 1.42904 * 109.47397 * 66.14106 * 16 15 14 18 18 C 1.42898 * 114.00273 * 175.02951 * 17 16 15 19 19 C 1.50703 * 109.47079 * 184.91735 * 18 17 16 20 20 H 1.07995 * 120.00029 * 355.37123 * 19 18 17 21 21 C 1.37878 * 119.99768 * 175.36687 * 19 18 17 22 22 N 1.31512 * 119.99938 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 120.00226 * 0.02562 * 21 19 18 24 24 H 1.48493 * 109.47073 * 89.99321 * 23 21 19 25 25 H 1.48497 * 109.46938 * 209.99701 * 23 21 19 26 26 H 1.48501 * 109.46857 * 329.99666 * 23 21 19 27 27 H 1.08992 * 109.47053 * 293.73683 * 1 2 3 28 28 H 1.08995 * 109.47200 * 53.73896 * 1 2 3 29 29 H 1.09000 * 109.46780 * 173.73814 * 1 2 3 30 30 H 1.09000 * 109.47512 * 240.00119 * 2 1 3 31 31 H 1.09000 * 109.47407 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47183 * 300.00151 * 3 2 1 33 33 H 1.09000 * 109.46811 * 59.99690 * 3 2 1 34 34 H 1.08002 * 119.81159 * 0.20903 * 7 6 4 35 35 H 1.07997 * 120.07000 * 180.02562 * 8 7 6 36 36 H 1.07990 * 120.08491 * 179.89313 * 9 8 7 37 37 H 1.08001 * 119.82570 * 180.02562 * 10 9 8 38 38 H 1.08996 * 109.39118 * 256.62536 * 12 11 6 39 39 H 1.09000 * 109.38471 * 136.92633 * 12 11 6 40 40 H 1.08997 * 109.63399 * 189.95915 * 13 12 11 41 41 H 1.09003 * 109.78937 * 69.46478 * 13 12 11 42 42 H 1.08997 * 109.47413 * 43.43221 * 15 14 4 43 43 H 1.09001 * 109.46795 * 283.42989 * 15 14 4 44 44 H 1.08999 * 109.47041 * 306.14279 * 16 15 14 45 45 H 1.09002 * 109.47646 * 186.14258 * 16 15 14 46 46 H 1.08998 * 109.47202 * 304.92029 * 18 17 16 47 47 H 1.09003 * 109.46881 * 64.91627 * 18 17 16 48 48 H 0.96995 * 120.00457 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.3555 -0.5312 2.0758 6 6 2.0974 -2.2022 0.9804 7 6 1.0445 -2.7900 0.2944 8 6 1.0530 -4.1447 0.0305 9 6 2.1167 -4.9214 0.4512 10 6 3.1658 -4.3379 1.1324 11 6 3.1587 -2.9766 1.3972 12 6 4.3276 -2.3827 2.1404 13 6 3.9529 -1.0051 2.6878 14 7 3.3706 -0.2107 1.5945 15 6 4.2531 -0.2046 0.4201 16 6 5.4614 0.6928 0.6949 17 8 6.2563 0.1168 1.7334 18 6 7.4731 0.8201 1.9921 19 6 8.2834 0.0634 3.0128 20 1 7.8751 -0.8215 3.4782 21 6 9.5461 0.5008 3.3523 22 7 10.2531 -0.1592 4.2434 23 14 10.2521 2.0317 2.5478 24 1 9.8918 3.2256 3.3540 25 1 11.7304 1.9137 2.4712 26 1 9.6952 2.1728 1.1784 27 1 -0.3633 0.4136 0.9407 28 1 -0.3633 0.6078 -0.8286 29 1 -0.3633 -1.0215 -0.1121 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 0.2132 -2.1841 -0.0347 35 1 0.2309 -4.5969 -0.5043 36 1 2.1262 -5.9820 0.2481 37 1 3.9969 -4.9445 1.4607 38 1 5.1753 -2.2842 1.4624 39 1 4.6016 -3.0382 2.9671 40 1 4.8448 -0.5069 3.0676 41 1 3.2236 -1.1129 3.4907 42 1 3.7069 0.1757 -0.4430 43 1 4.5935 -1.2198 0.2163 44 1 5.1180 1.6797 1.0053 45 1 6.0595 0.7848 -0.2117 46 1 8.0445 0.9095 1.0682 47 1 7.2435 1.8145 2.3750 48 1 11.1413 0.1486 4.4826 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590162342.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:31:57 Heat of formation + Delta-G solvation = -12.503383 kcal Electronic energy + Delta-G solvation = -26113.560664 eV Core-core repulsion = 22747.469470 eV Total energy + Delta-G solvation = -3366.091194 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.97863 -39.09190 -38.05821 -36.36927 -34.85849 -33.02298 -32.27051 -30.77581 -30.05848 -29.29014 -27.77821 -25.37227 -24.68277 -23.86988 -23.14189 -22.88430 -21.10204 -19.85663 -18.95095 -17.79694 -17.72943 -17.27137 -16.65176 -16.43554 -16.15122 -15.98256 -15.55957 -15.48335 -14.96091 -14.86195 -14.54464 -14.17765 -13.93613 -13.65643 -13.45079 -13.24912 -13.10761 -13.05749 -12.95635 -12.84239 -12.58038 -12.48908 -12.37890 -12.19947 -11.93815 -11.80507 -11.74767 -11.48367 -11.26818 -11.18420 -11.07613 -10.88683 -10.21518 -9.66773 -9.49249 -9.19004 -8.35744 -6.42467 0.43700 0.46812 1.33270 1.35790 1.46134 2.29773 2.82159 2.96759 2.98603 3.15057 3.71686 3.81122 3.88874 3.93061 4.11235 4.12788 4.16921 4.28769 4.33730 4.38061 4.42212 4.51158 4.56457 4.61930 4.65476 4.73567 4.76538 4.78478 4.83870 4.93260 4.96734 5.01799 5.05717 5.12256 5.13624 5.22036 5.24220 5.29993 5.37760 5.50368 5.53859 5.56061 5.63242 5.68640 5.76791 5.96719 6.09727 6.13700 6.26371 6.61607 6.79707 7.22144 8.81198 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.018933 B = 0.003983 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.529060 B = 7028.539102 C = 8126.639021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.083 4.083 3 C -0.153 4.153 4 C 0.124 3.876 5 H 0.092 0.908 6 C -0.116 4.116 7 C -0.131 4.131 8 C -0.128 4.128 9 C -0.125 4.125 10 C -0.139 4.139 11 C -0.089 4.089 12 C -0.108 4.108 13 C 0.058 3.942 14 N -0.511 5.511 15 C 0.043 3.957 16 C 0.056 3.944 17 O -0.390 6.390 18 C 0.177 3.823 19 C -0.536 4.536 20 H 0.032 0.968 21 C 0.013 3.987 22 N -0.944 5.944 23 Si 0.952 3.048 24 H -0.261 1.261 25 H -0.276 1.276 26 H -0.246 1.246 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.162 0.838 35 H 0.148 0.852 36 H 0.139 0.861 37 H 0.116 0.884 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.124 0.876 43 H 0.033 0.967 44 H 0.055 0.945 45 H 0.051 0.949 46 H 0.009 0.991 47 H 0.006 0.994 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.759 -1.666 -12.724 26.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.102 4.102 3 C -0.210 4.210 4 C 0.015 3.985 5 H 0.110 0.890 6 C -0.118 4.118 7 C -0.148 4.148 8 C -0.146 4.146 9 C -0.143 4.143 10 C -0.157 4.157 11 C -0.089 4.089 12 C -0.147 4.147 13 C -0.070 4.070 14 N -0.232 5.232 15 C -0.085 4.085 16 C -0.022 4.022 17 O -0.310 6.310 18 C 0.102 3.898 19 C -0.574 4.574 20 H 0.050 0.950 21 C -0.184 4.184 22 N -0.583 5.583 23 Si 0.773 3.227 24 H -0.186 1.186 25 H -0.201 1.201 26 H -0.170 1.170 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.178 0.822 35 H 0.166 0.834 36 H 0.157 0.843 37 H 0.134 0.866 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.141 0.859 43 H 0.051 0.949 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.027 0.973 47 H 0.024 0.976 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.684 -1.315 -12.352 25.863 hybrid contribution 1.344 -0.593 0.087 1.472 sum -21.340 -1.908 -12.265 24.688 Atomic orbital electron populations 1.22195 0.93210 1.02635 1.02871 1.21210 0.97113 0.96431 0.95443 1.22122 1.02449 0.94829 1.01618 1.20869 0.91036 0.87658 0.98933 0.88985 1.20517 0.94762 0.97303 0.99210 1.22031 0.98894 0.95768 0.98152 1.21464 0.98919 0.94037 1.00181 1.21366 0.93967 1.00880 0.98100 1.21281 0.99664 0.94315 1.00457 1.19760 0.95825 0.94196 0.99156 1.20913 0.95990 0.98216 0.99549 1.22167 1.00045 0.91009 0.93789 1.62783 1.02228 1.50857 1.07377 1.22612 0.92656 0.98647 0.94544 1.22662 0.91825 0.97173 0.90496 1.87915 1.33386 1.54182 1.55510 1.20296 0.83023 0.92031 0.94486 1.21139 1.00680 1.12459 1.23133 0.94972 1.25792 0.96535 1.00797 0.95310 1.70030 1.12370 1.42061 1.33866 0.85661 0.77905 0.78821 0.80279 1.18556 1.20068 1.16968 0.92196 0.91117 0.90747 0.91365 0.91406 0.92037 0.92862 0.82158 0.83425 0.84288 0.86559 0.91697 0.91616 0.90258 0.91263 0.85874 0.94904 0.92721 0.93039 0.97302 0.97627 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 8.85 71.98 0.64 -1.29 16 2 C -0.08 -1.47 1.54 -10.79 -0.02 -1.48 16 3 C -0.15 -2.82 8.18 71.98 0.59 -2.23 16 4 C 0.12 2.85 2.14 44.20 0.09 2.94 16 5 H 0.09 2.11 7.76 -2.39 -0.02 2.10 16 6 C -0.12 -2.84 4.98 -19.87 -0.10 -2.94 16 7 C -0.13 -2.54 8.90 22.33 0.20 -2.34 16 8 C -0.13 -2.33 10.05 22.22 0.22 -2.11 16 9 C -0.13 -2.61 10.05 22.23 0.22 -2.39 16 10 C -0.14 -3.64 9.66 22.33 0.22 -3.42 16 11 C -0.09 -2.56 5.18 -19.85 -0.10 -2.66 16 12 C -0.11 -3.64 5.12 29.82 0.15 -3.49 16 13 C 0.06 1.96 5.44 86.22 0.47 2.43 16 14 N -0.51 -14.68 4.05 -875.72 -3.54 -18.22 16 15 C 0.04 1.24 3.59 86.30 0.31 1.55 16 16 C 0.06 1.89 5.98 71.98 0.43 2.32 16 17 O -0.39 -17.61 7.13 -148.98 -1.06 -18.68 16 18 C 0.18 8.87 4.79 71.24 0.34 9.21 16 19 C -0.54 -32.48 9.99 25.60 0.26 -32.23 16 20 H 0.03 2.19 8.06 -2.91 -0.02 2.16 16 21 C 0.01 0.80 5.47 84.66 0.46 1.26 16 22 N -0.94 -59.67 13.96 21.45 0.30 -59.37 16 23 Si 0.95 43.78 27.56 68.60 1.89 45.67 16 24 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 25 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 26 H -0.25 -10.46 6.41 99.48 0.64 -9.82 16 27 H 0.06 0.77 7.97 -2.39 -0.02 0.75 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.07 0.80 4.57 -2.39 -0.01 0.79 16 30 H 0.07 1.24 7.18 -2.39 -0.02 1.22 16 31 H 0.07 1.45 4.00 -2.39 -0.01 1.44 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.16 2.26 3.89 -2.91 -0.01 2.25 16 35 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 36 H 0.14 2.21 8.06 -2.92 -0.02 2.19 16 37 H 0.12 2.97 8.06 -2.91 -0.02 2.95 16 38 H 0.06 2.50 6.26 -2.39 -0.01 2.48 16 39 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.08 3.31 5.85 -2.39 -0.01 3.30 16 41 H 0.07 2.19 8.05 -2.39 -0.02 2.17 16 42 H 0.12 2.90 4.20 -2.39 -0.01 2.89 16 43 H 0.03 1.08 5.15 -2.39 -0.01 1.07 16 44 H 0.05 1.78 7.89 -2.39 -0.02 1.76 16 45 H 0.05 1.63 8.12 -2.39 -0.02 1.61 16 46 H 0.01 0.45 6.85 -2.39 -0.02 0.43 16 47 H 0.01 0.29 7.80 -2.39 -0.02 0.27 16 48 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -68.93 351.86 2.85 -66.09 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 0.88 Total: 21.39 kcal Atomic # 6 Polarization: -41.26 SS G_CDS: 4.38 Total: -36.87 kcal Atomic # 7 Polarization: -74.35 SS G_CDS: -3.25 Total: -77.60 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -1.06 Total: -18.68 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.89 Total: 45.67 kcal Total: -68.93 2.85 -66.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590162342.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.584 kcal (2) G-P(sol) polarization free energy of solvation -68.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds