Wall clock time and date at job start Tue Mar 31 2020 10:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47335 * 2 1 4 4 H 1.08997 * 109.47975 * 304.97626 * 3 2 1 5 5 C 1.53096 * 109.47979 * 184.94306 * 3 2 1 6 6 C 1.53178 * 109.16080 * 182.40706 * 5 3 2 7 7 H 1.08997 * 109.61423 * 176.88895 * 6 5 3 8 8 N 1.46894 * 109.54646 * 297.11475 * 6 5 3 9 9 C 1.46899 * 111.00220 * 204.55618 * 8 6 5 10 10 H 1.09002 * 109.47043 * 35.00059 * 9 8 6 11 11 C 1.53002 * 109.47394 * 155.00114 * 9 8 6 12 12 C 1.50703 * 109.46970 * 295.00234 * 11 9 8 13 13 H 1.08002 * 119.99817 * 359.97438 * 12 11 9 14 14 C 1.37870 * 120.00164 * 179.97438 * 12 11 9 15 15 N 1.31515 * 120.00042 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00234 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47025 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47498 * 119.99753 * 16 14 12 19 19 H 1.48508 * 109.47386 * 240.00118 * 16 14 12 20 20 C 1.50703 * 109.47107 * 275.00079 * 9 8 6 21 21 C 1.38237 * 119.99761 * 319.72214 * 20 9 8 22 22 C 1.38239 * 119.99722 * 179.81066 * 21 20 9 23 23 C 1.38233 * 119.99797 * 0.42075 * 22 21 20 24 24 C 1.38239 * 120.00379 * 359.81510 * 23 22 21 25 25 C 1.38232 * 119.99809 * 359.97438 * 24 23 22 26 26 C 1.53181 * 109.03383 * 56.98527 * 6 5 3 27 27 C 1.53095 * 109.16141 * 303.01181 * 26 6 5 28 28 O 1.42901 * 109.41201 * 57.61757 * 27 26 6 29 29 H 1.08993 * 109.47198 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46417 * 299.99913 * 1 2 3 31 31 H 1.08996 * 109.47286 * 59.99577 * 1 2 3 32 32 H 1.08997 * 109.47129 * 239.99962 * 2 1 3 33 33 H 1.09004 * 109.47011 * 120.00243 * 2 1 3 34 34 H 1.09000 * 109.52026 * 62.50710 * 5 3 2 35 35 H 1.09001 * 109.52330 * 302.31012 * 5 3 2 36 36 H 1.00900 * 111.00005 * 80.60152 * 8 6 5 37 37 H 1.09000 * 109.47059 * 54.99932 * 11 9 8 38 38 H 1.08996 * 109.47073 * 175.00024 * 11 9 8 39 39 H 0.97001 * 120.00168 * 180.02562 * 15 14 12 40 40 H 1.07999 * 120.00184 * 0.02562 * 21 20 9 41 41 H 1.08002 * 119.99951 * 180.21395 * 22 21 20 42 42 H 1.08000 * 119.99901 * 179.78834 * 23 22 21 43 43 H 1.07997 * 119.99820 * 179.97438 * 24 23 22 44 44 H 1.07996 * 120.00285 * 179.97438 * 25 24 23 45 45 H 1.08994 * 109.52494 * 62.92237 * 26 6 5 46 46 H 1.09007 * 109.52020 * 183.11327 * 26 6 5 47 47 H 1.09000 * 109.47799 * 177.59270 * 27 26 6 48 48 H 1.08995 * 109.48516 * 297.63363 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6059 1.9815 -0.8420 5 6 3.5660 1.4445 -0.1244 6 6 4.0735 2.8884 -0.0631 7 1 5.1630 2.8950 -0.0955 8 7 3.5433 3.6446 -1.2054 9 6 4.4075 4.7883 -1.5265 10 1 5.4481 4.5199 -1.3439 11 6 4.2288 5.1653 -2.9985 12 6 4.7201 4.0375 -3.8691 13 1 5.1202 3.1417 -3.4176 14 6 4.6588 4.1493 -5.2419 15 7 4.1711 5.2399 -5.7917 16 14 5.2684 2.7518 -6.3210 17 1 5.7663 1.6457 -5.4642 18 1 4.1536 2.2583 -7.1688 19 1 6.3708 3.2403 -7.1879 20 6 4.0316 5.9613 -0.6583 21 6 2.7008 6.2298 -0.3978 22 6 2.3561 7.3035 0.4018 23 6 3.3417 8.1137 0.9337 24 6 4.6723 7.8481 0.6691 25 6 5.0172 6.7719 -0.1269 26 6 3.5959 3.5308 1.2429 27 6 2.0689 3.4483 1.3144 28 8 1.6622 2.0816 1.2211 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8544 0.9970 -1.0755 35 1 3.9990 0.8711 0.6953 36 1 2.5958 3.9448 -1.0319 37 1 3.1735 5.3476 -3.2013 38 1 4.8014 6.0672 -3.2147 39 1 4.1276 5.3185 -6.7576 40 1 1.9306 5.5988 -0.8161 41 1 1.3165 7.5113 0.6082 42 1 3.0723 8.9546 1.5555 43 1 5.4423 8.4814 1.0844 44 1 6.0567 6.5645 -0.3339 45 1 4.0295 2.9996 2.0900 46 1 3.9058 4.5756 1.2695 47 1 1.7263 3.8657 2.2613 48 1 1.6352 4.0137 0.4896 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590647082.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:45 Heat of formation + Delta-G solvation = -36.287923 kcal Electronic energy + Delta-G solvation = -26179.855008 eV Core-core repulsion = 22812.732439 eV Total energy + Delta-G solvation = -3367.122569 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.12986 -38.81033 -36.05723 -33.85056 -33.37722 -32.05667 -30.69041 -29.82098 -29.34184 -28.06721 -24.88468 -24.34837 -23.48442 -22.31482 -21.88256 -21.22493 -19.79444 -19.10614 -17.10664 -16.29349 -16.06873 -15.89996 -15.19654 -14.88782 -14.73173 -14.49031 -14.22811 -13.87740 -13.76512 -13.57501 -13.16564 -13.03257 -12.64241 -12.55452 -12.37061 -12.07359 -11.84864 -11.68024 -11.50934 -11.20226 -11.05337 -10.97740 -10.95352 -10.76842 -10.67114 -10.61712 -10.42903 -10.16974 -9.95989 -9.64809 -9.15811 -9.00386 -8.65809 -8.28679 -8.20154 -7.74566 -5.90144 -3.88490 1.65511 1.67124 3.36644 3.44319 3.48725 3.92513 4.07199 4.54616 4.68338 4.85018 5.03662 5.07620 5.10326 5.15842 5.17095 5.25759 5.27725 5.30802 5.41464 5.46988 5.48511 5.61429 5.66392 5.78844 5.81453 5.83855 5.89035 5.99841 6.01306 6.06156 6.12717 6.17972 6.23690 6.26942 6.30273 6.37737 6.39968 6.46657 6.72367 6.73594 6.80239 6.94931 7.28313 7.42601 7.49943 7.64085 7.94380 7.99319 8.11279 8.53940 9.16753 9.72993 11.21721 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.008551 B = 0.006709 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3273.843028 B = 4172.221955 C = 6708.621038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C 0.090 3.910 4 H 0.067 0.933 5 C -0.135 4.135 6 C 0.085 3.915 7 H 0.078 0.922 8 N -0.653 5.653 9 C 0.128 3.872 10 H 0.075 0.925 11 C 0.042 3.958 12 C -0.488 4.488 13 H 0.060 0.940 14 C 0.051 3.949 15 N -0.902 5.902 16 Si 0.889 3.111 17 H -0.274 1.274 18 H -0.287 1.287 19 H -0.288 1.288 20 C -0.086 4.086 21 C -0.120 4.120 22 C -0.118 4.118 23 C -0.137 4.137 24 C -0.119 4.119 25 C -0.119 4.119 26 C -0.189 4.189 27 C 0.065 3.935 28 O -0.383 6.383 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.331 0.669 37 H 0.018 0.982 38 H 0.018 0.982 39 H 0.257 0.743 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.119 0.881 45 H 0.067 0.933 46 H 0.077 0.923 47 H 0.086 0.914 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.674 -2.190 15.772 16.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C 0.032 3.968 4 H 0.085 0.915 5 C -0.173 4.173 6 C -0.026 4.026 7 H 0.096 0.904 8 N -0.284 5.284 9 C 0.018 3.982 10 H 0.093 0.907 11 C 0.005 3.995 12 C -0.527 4.527 13 H 0.078 0.922 14 C -0.149 4.149 15 N -0.543 5.543 16 Si 0.718 3.282 17 H -0.198 1.198 18 H -0.213 1.213 19 H -0.214 1.214 20 C -0.087 4.087 21 C -0.139 4.139 22 C -0.136 4.136 23 C -0.155 4.155 24 C -0.138 4.138 25 C -0.137 4.137 26 C -0.228 4.228 27 C -0.012 4.012 28 O -0.303 6.303 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.153 0.847 37 H 0.036 0.964 38 H 0.037 0.963 39 H 0.066 0.934 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.132 0.868 43 H 0.133 0.867 44 H 0.137 0.863 45 H 0.085 0.915 46 H 0.095 0.905 47 H 0.104 0.896 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.529 -2.656 15.251 15.878 hybrid contribution 0.284 0.269 -0.186 0.433 sum -3.245 -2.387 15.065 15.594 Atomic orbital electron populations 1.21715 0.95601 1.01089 1.02234 1.21533 0.96414 0.94859 1.02382 1.22148 0.94168 0.93602 0.86860 0.91507 1.22176 0.95836 0.96604 1.02689 1.21659 0.99452 0.93414 0.88038 0.90378 1.60796 1.05044 1.25349 1.37213 1.21057 0.95968 0.84302 0.96837 0.90699 1.19094 0.97505 0.96604 0.86340 1.21132 1.39317 1.01856 0.90359 0.92156 1.24994 0.95989 0.95608 0.98262 1.69979 1.47053 1.26791 1.10451 0.86577 0.78302 0.82715 0.80599 1.19819 1.21298 1.21436 1.21158 0.93280 0.98509 0.95799 1.20938 0.96003 0.98074 0.98840 1.21043 0.98944 0.95533 0.98097 1.20998 0.93171 0.99902 1.01435 1.21080 0.96120 0.97580 0.98983 1.21072 0.99323 0.95508 0.97839 1.22932 0.97237 1.02552 1.00097 1.22479 0.93997 0.83260 1.01462 1.87856 1.78726 1.24463 1.39208 0.93172 0.92222 0.92765 0.90583 0.91656 0.89886 0.91798 0.84700 0.96388 0.96331 0.93353 0.86522 0.86636 0.86810 0.86689 0.86307 0.91476 0.90485 0.89568 0.93293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.81 37.16 0.36 -1.29 16 2 C -0.11 -1.36 5.64 -26.73 -0.15 -1.51 16 3 C 0.09 1.23 2.40 -26.68 -0.06 1.17 16 4 H 0.07 1.02 7.37 -51.93 -0.38 0.64 16 5 C -0.13 -1.90 5.12 -26.59 -0.14 -2.03 16 6 C 0.09 1.28 2.89 -67.53 -0.19 1.09 16 7 H 0.08 1.22 7.44 -51.93 -0.39 0.83 16 8 N -0.65 -11.52 5.37 -100.76 -0.54 -12.06 16 9 C 0.13 2.47 2.17 -68.86 -0.15 2.32 16 10 H 0.07 1.47 7.29 -51.93 -0.38 1.10 16 11 C 0.04 1.04 4.63 -27.88 -0.13 0.91 16 12 C -0.49 -13.36 8.84 -34.44 -0.30 -13.66 16 13 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 14 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 15 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 16 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 17 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 C -0.09 -1.44 2.92 -104.62 -0.31 -1.74 16 21 C -0.12 -1.87 7.50 -39.58 -0.30 -2.16 16 22 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 16 23 C -0.14 -1.77 10.05 -39.58 -0.40 -2.17 16 24 C -0.12 -1.62 10.05 -39.58 -0.40 -2.01 16 25 C -0.12 -1.84 9.66 -39.58 -0.38 -2.22 16 26 C -0.19 -2.52 5.26 -26.59 -0.14 -2.66 16 27 C 0.06 0.85 6.44 37.21 0.24 1.09 16 28 O -0.38 -5.39 9.94 -35.23 -0.35 -5.74 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.69 7.82 -51.92 -0.41 0.28 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.33 5.63 3.65 -39.29 -0.14 5.49 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.12 1.81 5.85 -52.49 -0.31 1.51 16 41 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 42 H 0.11 1.19 8.06 -52.49 -0.42 0.76 16 43 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 44 H 0.12 1.74 8.04 -52.49 -0.42 1.32 16 45 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 46 H 0.08 1.08 5.74 -51.93 -0.30 0.78 16 47 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 48 H 0.05 0.66 4.92 -51.93 -0.26 0.40 16 LS Contribution 368.08 15.07 5.55 5.55 Total: -1.00 -29.70 368.08 -10.59 -40.29 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -8.02 Total: 7.04 kcal Atomic # 6 Polarization: -22.61 SS G_CDS: -2.94 Total: -25.55 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 0.19 Total: -38.38 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: -0.35 Total: -5.74 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.70 -10.59 -40.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590647082.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.998 kcal (2) G-P(sol) polarization free energy of solvation -29.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds