Wall clock time and date at job start Tue Mar 31 2020 10:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47302 * 2 1 4 4 H 1.08994 * 109.49328 * 304.97339 * 3 2 1 5 5 C 1.53094 * 109.48140 * 184.94054 * 3 2 1 6 6 C 1.53175 * 109.16395 * 182.41151 * 5 3 2 7 7 H 1.09000 * 109.61690 * 297.07343 * 6 5 3 8 8 N 1.46903 * 109.54529 * 176.85201 * 6 5 3 9 9 C 1.46900 * 111.00076 * 153.71262 * 8 6 5 10 10 H 1.09002 * 109.47098 * 34.28905 * 9 8 6 11 11 C 1.52999 * 109.46939 * 274.29282 * 9 8 6 12 12 C 1.50702 * 109.47175 * 174.29122 * 11 9 8 13 13 H 1.08010 * 119.99889 * 3.91894 * 12 11 9 14 14 C 1.37874 * 120.00166 * 183.92491 * 12 11 9 15 15 N 1.31522 * 119.99906 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 120.00126 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.46929 * 90.00460 * 16 14 12 18 18 H 1.48491 * 109.47456 * 210.00286 * 16 14 12 19 19 H 1.48501 * 109.47237 * 330.00631 * 16 14 12 20 20 C 1.50696 * 109.47027 * 154.29087 * 9 8 6 21 21 C 1.38230 * 120.00114 * 219.99598 * 20 9 8 22 22 C 1.38237 * 119.99995 * 179.97438 * 21 20 9 23 23 C 1.38232 * 119.99989 * 359.97438 * 22 21 20 24 24 C 1.38240 * 120.00170 * 359.97438 * 23 22 21 25 25 C 1.38228 * 119.99785 * 0.06764 * 24 23 22 26 26 C 1.53178 * 109.03436 * 56.98313 * 6 5 3 27 27 C 1.53090 * 109.16372 * 303.01813 * 26 6 5 28 28 O 1.42901 * 109.41421 * 57.61265 * 27 26 6 29 29 H 1.09001 * 109.47296 * 59.99480 * 1 2 3 30 30 H 1.09003 * 109.47349 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46902 * 299.99737 * 1 2 3 32 32 H 1.09000 * 109.46902 * 240.00263 * 2 1 3 33 33 H 1.08999 * 109.46903 * 120.00870 * 2 1 3 34 34 H 1.09001 * 109.51953 * 62.50993 * 5 3 2 35 35 H 1.08997 * 109.52523 * 302.32352 * 5 3 2 36 36 H 1.00901 * 110.99578 * 277.66507 * 8 6 5 37 37 H 1.08996 * 109.47291 * 294.28909 * 11 9 8 38 38 H 1.09003 * 109.47151 * 54.29220 * 11 9 8 39 39 H 0.97001 * 119.99771 * 179.97438 * 15 14 12 40 40 H 1.07998 * 120.00216 * 359.97438 * 21 20 9 41 41 H 1.08001 * 120.00069 * 180.02562 * 22 21 20 42 42 H 1.08005 * 120.00178 * 179.72332 * 23 22 21 43 43 H 1.07998 * 120.00143 * 179.97438 * 24 23 22 44 44 H 1.07998 * 119.99935 * 180.02562 * 25 24 23 45 45 H 1.08996 * 109.52407 * 62.93027 * 26 6 5 46 46 H 1.09003 * 109.51697 * 183.11356 * 26 6 5 47 47 H 1.08998 * 109.47683 * 177.59555 * 27 26 6 48 48 H 1.08998 * 109.48024 * 297.61342 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6060 1.9817 -0.8419 5 6 3.5659 1.4444 -0.1243 6 6 4.0735 2.8883 -0.0630 7 1 3.6814 3.4504 -0.9105 8 7 5.5419 2.8953 -0.1057 9 6 6.0463 4.1577 -0.6624 10 1 5.3884 4.9744 -0.3654 11 6 6.0843 4.0628 -2.1889 12 6 6.4672 5.4013 -2.7661 13 1 6.7255 6.2187 -2.1091 14 6 6.4879 5.5823 -4.1327 15 7 6.8226 6.7503 -4.6363 16 14 6.0419 4.1684 -5.2690 17 1 4.5816 4.1912 -5.5378 18 1 6.7828 4.3087 -6.5482 19 1 6.4064 2.8813 -4.6244 20 6 7.4360 4.4170 -0.1404 21 6 7.8124 5.6983 0.2166 22 6 9.0870 5.9361 0.6959 23 6 9.9851 4.8924 0.8187 24 6 9.6084 3.6109 0.4626 25 6 8.3341 3.3733 -0.0175 26 6 3.5958 3.5307 1.2430 27 6 2.0688 3.4482 1.3145 28 8 1.6621 2.0814 1.2211 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5140 0.8899 34 1 3.8544 0.9970 -1.0755 35 1 3.9989 0.8709 0.6952 36 1 5.9310 2.7223 0.8090 37 1 6.8182 3.3147 -2.4884 38 1 5.1004 3.7754 -2.5597 39 1 6.8375 6.8775 -5.5979 40 1 7.1106 6.5136 0.1211 41 1 9.3809 6.9371 0.9753 42 1 10.9824 5.0789 1.1889 43 1 10.3102 2.7956 0.5581 44 1 8.0397 2.3720 -0.2953 45 1 4.0295 2.9995 2.0902 46 1 3.9058 4.5754 1.2696 47 1 1.7262 3.8655 2.2614 48 1 1.6352 4.0139 0.4899 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590647083.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:48 Heat of formation + Delta-G solvation = -41.543900 kcal Electronic energy + Delta-G solvation = -25418.692099 eV Core-core repulsion = 22051.341614 eV Total energy + Delta-G solvation = -3367.350485 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.77637 -38.85556 -36.34198 -34.03176 -33.49284 -32.12851 -30.40563 -29.85739 -29.46290 -28.87954 -25.06139 -23.77167 -23.33820 -22.11496 -21.84338 -21.09003 -20.14486 -19.33672 -16.97452 -16.48076 -16.43797 -15.96976 -15.19123 -14.85213 -14.68213 -14.38881 -14.05617 -13.88298 -13.81627 -13.67929 -13.30430 -13.12031 -12.86794 -12.69795 -12.45888 -12.12589 -11.92751 -11.75754 -11.60529 -11.43452 -11.24755 -11.11287 -10.95595 -10.78297 -10.75973 -10.52987 -10.19254 -10.11682 -9.98652 -9.76143 -9.50307 -9.15370 -8.52283 -8.35648 -8.13447 -7.93105 -6.02888 -4.00033 1.91592 1.95071 3.30906 3.39296 3.45312 3.75494 4.26952 4.40978 4.47075 4.80047 4.83943 4.92469 5.07310 5.15527 5.19117 5.29173 5.31548 5.36069 5.40290 5.43359 5.47696 5.52306 5.63941 5.69294 5.70250 5.80733 5.85502 5.90159 5.94778 6.02055 6.07442 6.09482 6.14405 6.21767 6.27997 6.34379 6.42896 6.58130 6.67299 6.93535 6.99822 7.10299 7.17592 7.24541 7.27602 7.55361 7.62646 7.80775 7.87006 8.54098 9.02059 9.60051 11.10293 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.010713 B = 0.004878 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.088355 B = 5738.413856 C = 7408.357370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C 0.089 3.911 4 H 0.057 0.943 5 C -0.134 4.134 6 C 0.087 3.913 7 H 0.083 0.917 8 N -0.679 5.679 9 C 0.136 3.864 10 H 0.047 0.953 11 C 0.009 3.991 12 C -0.517 4.517 13 H 0.075 0.925 14 C 0.069 3.931 15 N -0.903 5.903 16 Si 0.874 3.126 17 H -0.279 1.279 18 H -0.289 1.289 19 H -0.264 1.264 20 C -0.052 4.052 21 C -0.098 4.098 22 C -0.124 4.124 23 C -0.134 4.134 24 C -0.129 4.129 25 C -0.108 4.108 26 C -0.184 4.184 27 C 0.067 3.933 28 O -0.381 6.381 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.333 0.667 37 H 0.022 0.978 38 H 0.014 0.986 39 H 0.262 0.738 40 H 0.118 0.882 41 H 0.114 0.886 42 H 0.111 0.889 43 H 0.113 0.887 44 H 0.124 0.876 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.090 0.910 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.924 -9.704 12.882 17.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C 0.031 3.969 4 H 0.075 0.925 5 C -0.173 4.173 6 C -0.024 4.024 7 H 0.101 0.899 8 N -0.309 5.309 9 C 0.028 3.972 10 H 0.065 0.935 11 C -0.029 4.029 12 C -0.555 4.555 13 H 0.093 0.907 14 C -0.132 4.132 15 N -0.542 5.542 16 Si 0.702 3.298 17 H -0.205 1.205 18 H -0.215 1.215 19 H -0.188 1.188 20 C -0.052 4.052 21 C -0.117 4.117 22 C -0.142 4.142 23 C -0.152 4.152 24 C -0.147 4.147 25 C -0.126 4.126 26 C -0.223 4.223 27 C -0.011 4.011 28 O -0.300 6.300 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.152 0.848 37 H 0.040 0.960 38 H 0.032 0.968 39 H 0.072 0.928 40 H 0.136 0.864 41 H 0.132 0.868 42 H 0.129 0.871 43 H 0.131 0.869 44 H 0.142 0.858 45 H 0.088 0.912 46 H 0.091 0.909 47 H 0.108 0.892 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.949 -10.043 12.241 16.915 hybrid contribution -0.023 0.333 -0.363 0.493 sum -5.972 -9.711 11.878 16.463 Atomic orbital electron populations 1.21722 0.95489 1.01264 1.02215 1.21525 0.96429 0.94553 1.02679 1.22188 0.93983 0.93799 0.86953 0.92461 1.22189 0.94582 0.97165 1.03327 1.21618 0.88707 0.95683 0.96382 0.89907 1.60736 1.05284 1.36008 1.28833 1.20575 0.90443 0.88589 0.97623 0.93509 1.19525 0.96604 0.97854 0.88928 1.21129 1.45808 0.96312 0.92268 0.90697 1.24948 0.94789 0.95280 0.98149 1.69911 1.49080 1.22914 1.12323 0.86854 0.78575 0.83965 0.80409 1.20472 1.21518 1.18833 1.19859 0.96279 0.93221 0.95888 1.21017 0.96495 0.96460 0.97679 1.21017 0.94039 0.98512 1.00666 1.20976 0.98978 0.93304 1.01957 1.21019 0.96395 0.96635 1.00644 1.20977 0.93128 0.99351 0.99151 1.22941 0.97346 1.02195 0.99821 1.22462 0.93686 0.83106 1.01803 1.87875 1.78654 1.24663 1.38804 0.92960 0.92985 0.92050 0.90613 0.91253 0.90298 0.91274 0.84849 0.95982 0.96809 0.92845 0.86396 0.86809 0.87054 0.86926 0.85838 0.91189 0.90912 0.89228 0.93162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.81 37.16 0.36 -1.03 16 2 C -0.11 -1.15 5.64 -26.74 -0.15 -1.30 16 3 C 0.09 1.05 2.64 -26.69 -0.07 0.98 16 4 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 5 C -0.13 -1.71 5.03 -26.59 -0.13 -1.85 16 6 C 0.09 1.24 2.33 -67.53 -0.16 1.08 16 7 H 0.08 1.36 7.16 -51.93 -0.37 0.99 16 8 N -0.68 -10.74 5.46 -100.76 -0.55 -11.29 16 9 C 0.14 2.59 2.05 -68.87 -0.14 2.45 16 10 H 0.05 0.92 7.14 -51.93 -0.37 0.55 16 11 C 0.01 0.21 3.72 -27.88 -0.10 0.10 16 12 C -0.52 -14.31 9.19 -34.44 -0.32 -14.62 16 13 H 0.07 2.20 6.69 -52.48 -0.35 1.85 16 14 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 15 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 16 Si 0.87 21.88 27.39 -169.99 -4.66 17.22 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 19 H -0.26 -6.44 6.66 56.52 0.38 -6.06 16 20 C -0.05 -0.97 4.25 -104.62 -0.45 -1.41 16 21 C -0.10 -1.81 8.64 -39.58 -0.34 -2.15 16 22 C -0.12 -2.05 10.05 -39.58 -0.40 -2.44 16 23 C -0.13 -2.05 10.05 -39.58 -0.40 -2.45 16 24 C -0.13 -2.01 10.05 -39.58 -0.40 -2.40 16 25 C -0.11 -1.85 8.99 -39.58 -0.36 -2.21 16 26 C -0.18 -2.28 5.39 -26.59 -0.14 -2.43 16 27 C 0.07 0.77 6.84 37.20 0.25 1.03 16 28 O -0.38 -4.82 9.94 -35.23 -0.35 -5.17 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.61 7.82 -51.93 -0.41 0.21 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.33 4.82 7.64 -39.29 -0.30 4.52 16 37 H 0.02 0.54 7.47 -51.93 -0.39 0.16 16 38 H 0.01 0.33 6.67 -51.93 -0.35 -0.02 16 39 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.12 2.19 7.83 -52.49 -0.41 1.77 16 41 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 42 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 43 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 44 H 0.12 2.04 7.71 -52.49 -0.40 1.63 16 45 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 46 H 0.07 0.93 7.61 -51.93 -0.40 0.54 16 47 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 375.36 15.07 5.66 5.66 Total: -1.00 -30.37 375.36 -10.56 -40.93 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -8.40 Total: 6.30 kcal Atomic # 6 Polarization: -23.71 SS G_CDS: -3.03 Total: -26.74 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.22 Total: -38.20 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: -0.35 Total: -5.17 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.66 Total: 17.22 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.37 -10.56 -40.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590647083.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.613 kcal (2) G-P(sol) polarization free energy of solvation -30.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds