Wall clock time and date at job start Tue Mar 31 2020 10:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47302 * 2 1 4 4 H 1.08994 * 109.49328 * 304.97339 * 3 2 1 5 5 C 1.53094 * 109.48140 * 184.94054 * 3 2 1 6 6 C 1.53175 * 109.16395 * 182.41151 * 5 3 2 7 7 H 1.09000 * 109.61690 * 297.07343 * 6 5 3 8 8 N 1.46903 * 109.54529 * 176.85201 * 6 5 3 9 9 C 1.46900 * 111.00076 * 153.71262 * 8 6 5 10 10 H 1.09002 * 109.47098 * 34.28905 * 9 8 6 11 11 C 1.52999 * 109.46939 * 274.29282 * 9 8 6 12 12 C 1.50702 * 109.47175 * 174.29122 * 11 9 8 13 13 H 1.08010 * 119.99889 * 3.91894 * 12 11 9 14 14 C 1.37874 * 120.00166 * 183.92491 * 12 11 9 15 15 N 1.31522 * 119.99906 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 120.00126 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.46929 * 90.00460 * 16 14 12 18 18 H 1.48491 * 109.47456 * 210.00286 * 16 14 12 19 19 H 1.48501 * 109.47237 * 330.00631 * 16 14 12 20 20 C 1.50696 * 109.47027 * 154.29087 * 9 8 6 21 21 C 1.38230 * 120.00114 * 219.99598 * 20 9 8 22 22 C 1.38237 * 119.99995 * 179.97438 * 21 20 9 23 23 C 1.38232 * 119.99989 * 359.97438 * 22 21 20 24 24 C 1.38240 * 120.00170 * 359.97438 * 23 22 21 25 25 C 1.38228 * 119.99785 * 0.06764 * 24 23 22 26 26 C 1.53178 * 109.03436 * 56.98313 * 6 5 3 27 27 C 1.53090 * 109.16372 * 303.01813 * 26 6 5 28 28 O 1.42901 * 109.41421 * 57.61265 * 27 26 6 29 29 H 1.09001 * 109.47296 * 59.99480 * 1 2 3 30 30 H 1.09003 * 109.47349 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46902 * 299.99737 * 1 2 3 32 32 H 1.09000 * 109.46902 * 240.00263 * 2 1 3 33 33 H 1.08999 * 109.46903 * 120.00870 * 2 1 3 34 34 H 1.09001 * 109.51953 * 62.50993 * 5 3 2 35 35 H 1.08997 * 109.52523 * 302.32352 * 5 3 2 36 36 H 1.00901 * 110.99578 * 277.66507 * 8 6 5 37 37 H 1.08996 * 109.47291 * 294.28909 * 11 9 8 38 38 H 1.09003 * 109.47151 * 54.29220 * 11 9 8 39 39 H 0.97001 * 119.99771 * 179.97438 * 15 14 12 40 40 H 1.07998 * 120.00216 * 359.97438 * 21 20 9 41 41 H 1.08001 * 120.00069 * 180.02562 * 22 21 20 42 42 H 1.08005 * 120.00178 * 179.72332 * 23 22 21 43 43 H 1.07998 * 120.00143 * 179.97438 * 24 23 22 44 44 H 1.07998 * 119.99935 * 180.02562 * 25 24 23 45 45 H 1.08996 * 109.52407 * 62.93027 * 26 6 5 46 46 H 1.09003 * 109.51697 * 183.11356 * 26 6 5 47 47 H 1.08998 * 109.47683 * 177.59555 * 27 26 6 48 48 H 1.08998 * 109.48024 * 297.61342 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6060 1.9817 -0.8419 5 6 3.5659 1.4444 -0.1243 6 6 4.0735 2.8883 -0.0630 7 1 3.6814 3.4504 -0.9105 8 7 5.5419 2.8953 -0.1057 9 6 6.0463 4.1577 -0.6624 10 1 5.3884 4.9744 -0.3654 11 6 6.0843 4.0628 -2.1889 12 6 6.4672 5.4013 -2.7661 13 1 6.7255 6.2187 -2.1091 14 6 6.4879 5.5823 -4.1327 15 7 6.8226 6.7503 -4.6363 16 14 6.0419 4.1684 -5.2690 17 1 4.5816 4.1912 -5.5378 18 1 6.7828 4.3087 -6.5482 19 1 6.4064 2.8813 -4.6244 20 6 7.4360 4.4170 -0.1404 21 6 7.8124 5.6983 0.2166 22 6 9.0870 5.9361 0.6959 23 6 9.9851 4.8924 0.8187 24 6 9.6084 3.6109 0.4626 25 6 8.3341 3.3733 -0.0175 26 6 3.5958 3.5307 1.2430 27 6 2.0688 3.4482 1.3145 28 8 1.6621 2.0814 1.2211 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5140 0.8899 34 1 3.8544 0.9970 -1.0755 35 1 3.9989 0.8709 0.6952 36 1 5.9310 2.7223 0.8090 37 1 6.8182 3.3147 -2.4884 38 1 5.1004 3.7754 -2.5597 39 1 6.8375 6.8775 -5.5979 40 1 7.1106 6.5136 0.1211 41 1 9.3809 6.9371 0.9753 42 1 10.9824 5.0789 1.1889 43 1 10.3102 2.7956 0.5581 44 1 8.0397 2.3720 -0.2953 45 1 4.0295 2.9995 2.0902 46 1 3.9058 4.5754 1.2696 47 1 1.7262 3.8655 2.2614 48 1 1.6352 4.0139 0.4899 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590647083.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:47 Heat of formation + Delta-G solvation = -58.535565 kcal Electronic energy + Delta-G solvation = -25419.428913 eV Core-core repulsion = 22051.341614 eV Total energy + Delta-G solvation = -3368.087299 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.90488 -40.10138 -37.63110 -35.24360 -34.85980 -33.87291 -31.71574 -30.85359 -30.72994 -30.58307 -26.45287 -25.01582 -24.44119 -23.62047 -23.23576 -22.01911 -21.26227 -20.88750 -18.99144 -17.82272 -17.39963 -17.04358 -16.61240 -16.24659 -16.08953 -15.70560 -15.40480 -15.12460 -15.00311 -14.73291 -14.56222 -14.42599 -14.26633 -14.11798 -13.92134 -13.55065 -13.21523 -13.13379 -12.73694 -12.66454 -12.52700 -12.36053 -12.09512 -12.03972 -11.89144 -11.83064 -11.74012 -11.65066 -11.51433 -11.31625 -11.11217 -10.74045 -10.49279 -9.68178 -9.46732 -9.29384 -8.26503 -6.27681 0.59323 0.62890 1.31546 1.34607 1.46672 2.35901 2.82722 2.98319 3.08625 3.15608 3.74585 3.82109 3.95666 3.98212 4.10224 4.14759 4.18968 4.24919 4.27151 4.38601 4.41501 4.45560 4.49829 4.55297 4.73950 4.77158 4.78423 4.81764 4.84750 4.91722 4.93043 5.06423 5.12791 5.13493 5.17462 5.20091 5.25108 5.28726 5.34383 5.44734 5.46907 5.62668 5.69576 5.70793 5.80231 6.15685 6.25866 6.29351 6.35657 6.56645 6.79581 7.35718 8.89698 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.010713 B = 0.004878 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.088355 B = 5738.413856 C = 7408.357370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.112 4.112 3 C 0.088 3.912 4 H 0.050 0.950 5 C -0.126 4.126 6 C 0.084 3.916 7 H 0.057 0.943 8 N -0.673 5.673 9 C 0.150 3.850 10 H 0.031 0.969 11 C 0.017 3.983 12 C -0.516 4.516 13 H 0.044 0.956 14 C 0.010 3.990 15 N -0.949 5.949 16 Si 0.937 3.063 17 H -0.269 1.269 18 H -0.286 1.286 19 H -0.252 1.252 20 C -0.073 4.073 21 C -0.125 4.125 22 C -0.132 4.132 23 C -0.131 4.131 24 C -0.126 4.126 25 C -0.117 4.117 26 C -0.175 4.175 27 C 0.067 3.933 28 O -0.387 6.387 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.345 0.655 37 H 0.013 0.987 38 H 0.011 0.989 39 H 0.263 0.737 40 H 0.100 0.900 41 H 0.132 0.868 42 H 0.146 0.854 43 H 0.146 0.854 44 H 0.130 0.870 45 H 0.078 0.922 46 H 0.064 0.936 47 H 0.110 0.890 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.548 -12.102 13.914 19.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 C 0.030 3.970 4 H 0.068 0.932 5 C -0.164 4.164 6 C -0.026 4.026 7 H 0.075 0.925 8 N -0.303 5.303 9 C 0.041 3.959 10 H 0.049 0.951 11 C -0.021 4.021 12 C -0.554 4.554 13 H 0.063 0.937 14 C -0.186 4.186 15 N -0.591 5.591 16 Si 0.762 3.238 17 H -0.194 1.194 18 H -0.212 1.212 19 H -0.176 1.176 20 C -0.074 4.074 21 C -0.143 4.143 22 C -0.150 4.150 23 C -0.149 4.149 24 C -0.144 4.144 25 C -0.135 4.135 26 C -0.215 4.215 27 C -0.011 4.011 28 O -0.306 6.306 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.164 0.836 37 H 0.032 0.968 38 H 0.030 0.970 39 H 0.072 0.928 40 H 0.118 0.882 41 H 0.150 0.850 42 H 0.164 0.836 43 H 0.163 0.837 44 H 0.148 0.852 45 H 0.097 0.903 46 H 0.083 0.917 47 H 0.128 0.872 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.586 -12.457 13.299 19.059 hybrid contribution -0.089 1.151 -0.609 1.305 sum -5.675 -11.306 12.691 17.919 Atomic orbital electron populations 1.21700 0.94919 1.02112 1.01732 1.21540 0.96908 0.93169 1.03325 1.22252 0.93233 0.94938 0.86569 0.93163 1.22115 0.95297 0.95687 1.03320 1.21653 0.87697 0.96837 0.96459 0.92451 1.60621 1.06314 1.33882 1.29531 1.20162 0.91217 0.89515 0.94983 0.95137 1.19366 0.95701 0.94976 0.92029 1.21425 1.44552 0.97368 0.92072 0.93736 1.25809 0.95041 0.97801 0.99991 1.70054 1.51076 1.25191 1.12743 0.85844 0.78744 0.81006 0.78218 1.19399 1.21208 1.17611 1.19882 0.96318 0.93890 0.97300 1.21079 0.97564 0.96194 0.99482 1.21316 0.93374 1.00147 1.00157 1.21400 1.00092 0.92721 1.00654 1.21427 0.96084 0.97828 0.99070 1.21132 0.93776 0.99102 0.99483 1.22838 0.98165 1.01559 0.98901 1.22536 0.92841 0.82912 1.02788 1.87878 1.78678 1.24971 1.39071 0.93061 0.91489 0.92911 0.89591 0.90949 0.90784 0.90540 0.83601 0.96836 0.97045 0.92774 0.88150 0.84962 0.83626 0.83653 0.85222 0.90308 0.91734 0.87239 0.93517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.81 71.98 0.71 -1.78 16 2 C -0.11 -2.04 5.64 30.59 0.17 -1.87 16 3 C 0.09 1.99 2.64 30.62 0.08 2.07 16 4 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 5 C -0.13 -3.06 5.03 30.68 0.15 -2.91 16 6 C 0.08 2.38 2.33 45.03 0.11 2.49 16 7 H 0.06 1.93 7.16 -2.39 -0.02 1.91 16 8 N -0.67 -21.09 5.46 -472.70 -2.58 -23.67 16 9 C 0.15 5.88 2.05 44.17 0.09 5.97 16 10 H 0.03 1.27 7.14 -2.39 -0.02 1.25 16 11 C 0.02 0.82 3.72 29.85 0.11 0.94 16 12 C -0.52 -29.50 9.19 25.60 0.24 -29.27 16 13 H 0.04 2.76 6.69 -2.91 -0.02 2.74 16 14 C 0.01 0.60 5.47 84.65 0.46 1.06 16 15 N -0.95 -59.88 13.96 21.45 0.30 -59.58 16 16 Si 0.94 45.44 27.39 68.60 1.88 47.32 16 17 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 18 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 19 H -0.25 -11.66 6.66 99.48 0.66 -10.99 16 20 C -0.07 -2.77 4.25 -19.87 -0.08 -2.86 16 21 C -0.12 -4.74 8.64 22.27 0.19 -4.55 16 22 C -0.13 -4.25 10.05 22.27 0.22 -4.03 16 23 C -0.13 -3.66 10.05 22.27 0.22 -3.44 16 24 C -0.13 -3.59 10.05 22.27 0.22 -3.36 16 25 C -0.12 -3.87 8.99 22.27 0.20 -3.67 16 26 C -0.18 -4.27 5.39 30.68 0.17 -4.11 16 27 C 0.07 1.48 6.84 72.01 0.49 1.97 16 28 O -0.39 -9.25 9.94 -148.98 -1.48 -10.73 16 29 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 31 H 0.05 0.98 7.82 -2.39 -0.02 0.96 16 32 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.34 9.64 7.64 -89.69 -0.69 8.96 16 37 H 0.01 0.66 7.47 -2.39 -0.02 0.64 16 38 H 0.01 0.54 6.67 -2.39 -0.02 0.53 16 39 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 40 H 0.10 4.03 7.83 -2.91 -0.02 4.00 16 41 H 0.13 3.63 8.06 -2.91 -0.02 3.61 16 42 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 43 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 44 H 0.13 4.06 7.71 -2.91 -0.02 4.04 16 45 H 0.08 1.79 8.08 -2.39 -0.02 1.77 16 46 H 0.06 1.68 7.61 -2.39 -0.02 1.66 16 47 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 48 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -66.52 375.36 2.06 -64.47 By element: Atomic # 1 Polarization: 29.35 SS G_CDS: 0.19 Total: 29.53 kcal Atomic # 6 Polarization: -51.10 SS G_CDS: 3.76 Total: -47.34 kcal Atomic # 7 Polarization: -80.97 SS G_CDS: -2.28 Total: -83.25 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: -1.48 Total: -10.73 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.88 Total: 47.32 kcal Total: -66.52 2.06 -64.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590647083.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.932 kcal (2) G-P(sol) polarization free energy of solvation -66.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds