Wall clock time and date at job start Tue Mar 31 2020 09:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47298 * 2 1 4 4 C 1.53001 * 109.47222 * 120.00088 * 2 1 3 5 5 H 1.08998 * 109.47228 * 303.65829 * 4 2 1 6 6 C 1.53001 * 109.46723 * 63.66361 * 4 2 1 7 7 N 1.46899 * 109.46656 * 183.11718 * 6 4 2 8 8 C 1.48538 * 111.00066 * 58.27281 * 7 6 4 9 9 C 1.54943 * 103.22791 * 159.71848 * 8 7 6 10 10 C 1.54594 * 102.91970 * 322.58607 * 9 8 7 11 11 O 1.42905 * 110.38779 * 262.99857 * 10 9 8 12 12 C 1.50697 * 110.30978 * 140.87506 * 10 9 8 13 13 H 1.08002 * 120.00129 * 240.34535 * 12 10 9 14 14 C 1.37878 * 120.00033 * 60.34309 * 12 10 9 15 15 N 1.31521 * 119.99954 * 1.49728 * 14 12 10 16 16 Si 1.86805 * 120.00099 * 181.50095 * 14 12 10 17 17 H 1.48497 * 109.47006 * 94.98408 * 16 14 12 18 18 H 1.48497 * 109.46787 * 214.98884 * 16 14 12 19 19 H 1.48503 * 109.46661 * 334.98382 * 16 14 12 20 20 C 1.47906 * 110.99990 * 175.66689 * 7 6 4 21 21 C 1.50707 * 109.47046 * 183.65911 * 4 2 1 22 22 C 1.38235 * 119.99921 * 299.73195 * 21 4 2 23 23 C 1.38238 * 119.99560 * 179.78690 * 22 21 4 24 24 C 1.38237 * 119.99806 * 0.44039 * 23 22 21 25 25 C 1.38232 * 120.00382 * 359.81197 * 24 23 22 26 26 C 1.38232 * 119.99783 * 359.97438 * 25 24 23 27 27 H 1.08996 * 109.46839 * 54.05461 * 1 2 3 28 28 H 1.08997 * 109.47473 * 174.05945 * 1 2 3 29 29 H 1.09000 * 109.47119 * 294.05827 * 1 2 3 30 30 H 1.09000 * 109.46759 * 240.00508 * 2 1 3 31 31 H 1.08996 * 109.46589 * 59.99799 * 3 2 1 32 32 H 1.08994 * 109.47149 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47147 * 300.00618 * 3 2 1 34 34 H 1.08994 * 109.46978 * 303.11433 * 6 4 2 35 35 H 1.09003 * 109.47104 * 63.12025 * 6 4 2 36 36 H 1.09003 * 110.66549 * 278.14994 * 8 7 6 37 37 H 1.09000 * 110.66812 * 41.28005 * 8 7 6 38 38 H 1.08998 * 110.72128 * 204.22581 * 9 8 7 39 39 H 1.09001 * 110.87211 * 81.01360 * 9 8 7 40 40 H 0.96701 * 113.99630 * 295.76146 * 11 10 9 41 41 H 0.97003 * 119.99624 * 180.02562 * 15 14 12 42 42 H 1.09000 * 109.91460 * 333.50755 * 20 7 6 43 43 H 1.08991 * 109.91642 * 94.60404 * 20 7 6 44 44 H 1.07992 * 120.00341 * 359.97438 * 22 21 4 45 45 H 1.07998 * 119.99919 * 180.26605 * 23 22 21 46 46 H 1.08005 * 119.99844 * 179.83231 * 24 23 22 47 47 H 1.07997 * 120.00159 * 180.02562 * 25 24 23 48 48 H 1.08001 * 119.99990 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6242 -0.2467 2.1380 6 6 1.6066 -2.1879 1.2039 7 7 2.0318 -2.8624 2.4377 8 6 1.4553 -2.1968 3.6340 9 6 1.5492 -3.2902 4.7278 10 6 1.2324 -4.5871 3.9482 11 8 -0.1450 -4.9359 4.1009 12 6 2.1124 -5.7131 4.4265 13 1 2.7839 -6.2037 3.7375 14 6 2.0602 -6.1169 5.7438 15 7 1.2214 -5.5392 6.5760 16 14 3.1810 -7.4844 6.3466 17 1 4.4047 -6.8936 6.9455 18 1 2.4698 -8.2925 7.3695 19 1 3.5593 -8.3541 5.2039 20 6 1.5401 -4.2568 2.4759 21 6 3.5444 -0.6432 1.2954 22 6 4.2964 -1.1870 0.2709 23 6 5.6761 -1.1115 0.3111 24 6 6.3040 -0.5002 1.3803 25 6 5.5521 0.0390 2.4073 26 6 4.1722 -0.0326 2.3649 27 1 -0.3633 0.6032 -0.8320 28 1 -0.3634 -1.0221 -0.1064 29 1 -0.3633 0.4189 0.9384 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 0.5218 -2.2436 1.1147 35 1 2.0674 -2.6766 0.3454 36 1 2.0465 -1.3239 3.9109 37 1 0.4165 -1.9186 3.4563 38 1 0.8085 -3.1189 5.5089 39 1 2.5526 -3.3303 5.1517 40 1 -0.3971 -5.1542 5.0086 41 1 1.1851 -5.8231 7.5029 42 1 0.6333 -4.3473 1.8778 43 1 2.3060 -4.9312 2.0932 44 1 3.8060 -1.6682 -0.5623 45 1 6.2636 -1.5326 -0.4913 46 1 7.3820 -0.4435 1.4130 47 1 6.0426 0.5170 3.2423 48 1 3.5847 0.3890 3.1670 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592521988.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:33 Heat of formation + Delta-G solvation = -37.489474 kcal Electronic energy + Delta-G solvation = -26053.532560 eV Core-core repulsion = 22686.357888 eV Total energy + Delta-G solvation = -3367.174672 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 2.55 seconds Orbital eigenvalues (eV) -39.80991 -38.15310 -36.54096 -34.46256 -32.06690 -31.51073 -30.69267 -29.89452 -28.09753 -27.33291 -26.68915 -24.41403 -23.10567 -22.28323 -21.49211 -20.36239 -19.42058 -18.96556 -17.04825 -16.79225 -15.48085 -15.39207 -14.87851 -14.75463 -14.56731 -14.18157 -14.00715 -13.80706 -13.64372 -13.17109 -13.12327 -12.45854 -12.41776 -12.28720 -12.13347 -12.06127 -11.92509 -11.46104 -11.29664 -11.19054 -11.16681 -10.95433 -10.86245 -10.65362 -10.54071 -10.42692 -10.34796 -10.22307 -10.16711 -9.84824 -9.08473 -8.65488 -8.54702 -8.36148 -8.05751 -7.65364 -6.15154 -4.21157 1.64798 1.66426 3.26570 3.33688 3.38147 4.03887 4.35861 4.50573 4.70872 4.92011 5.01776 5.12571 5.15957 5.18441 5.26694 5.31565 5.46852 5.57991 5.60867 5.70724 5.73599 5.77293 5.81545 5.84813 5.85897 5.97441 6.04499 6.07872 6.13146 6.21224 6.23917 6.25517 6.30077 6.34243 6.42492 6.49074 6.58032 6.71647 6.74043 6.92954 7.00258 7.13140 7.26021 7.37216 7.59831 7.74653 7.80389 7.90862 8.22306 8.80897 9.44932 9.54249 10.92172 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.015778 B = 0.004488 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.144006 B = 6236.850907 C = 7302.874517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.086 4.086 3 C -0.145 4.145 4 C -0.045 4.045 5 H 0.078 0.922 6 C 0.054 3.946 7 N -0.506 5.506 8 C 0.033 3.967 9 C -0.114 4.114 10 C 0.243 3.757 11 O -0.596 6.596 12 C -0.526 4.526 13 H 0.061 0.939 14 C 0.068 3.932 15 N -0.899 5.899 16 Si 0.898 3.102 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 C 0.056 3.944 21 C -0.037 4.037 22 C -0.112 4.112 23 C -0.120 4.120 24 C -0.133 4.133 25 C -0.118 4.118 26 C -0.111 4.111 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.035 0.965 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.030 0.970 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.381 0.619 41 H 0.265 0.735 42 H 0.033 0.967 43 H 0.076 0.924 44 H 0.114 0.886 45 H 0.114 0.886 46 H 0.113 0.887 47 H 0.115 0.885 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.324 13.201 -11.004 17.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.105 4.105 3 C -0.202 4.202 4 C -0.063 4.063 5 H 0.096 0.904 6 C -0.075 4.075 7 N -0.230 5.230 8 C -0.095 4.095 9 C -0.153 4.153 10 C 0.204 3.796 11 O -0.405 6.405 12 C -0.565 4.565 13 H 0.079 0.921 14 C -0.133 4.133 15 N -0.539 5.539 16 Si 0.726 3.274 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.072 4.072 21 C -0.037 4.037 22 C -0.130 4.130 23 C -0.138 4.138 24 C -0.151 4.151 25 C -0.136 4.136 26 C -0.129 4.129 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.048 0.952 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.231 0.769 41 H 0.075 0.925 42 H 0.051 0.949 43 H 0.094 0.906 44 H 0.132 0.868 45 H 0.132 0.868 46 H 0.132 0.868 47 H 0.133 0.867 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.825 13.314 -11.469 17.984 hybrid contribution -0.187 -0.946 1.108 1.469 sum 3.638 12.368 -10.361 16.539 Atomic orbital electron populations 1.21901 0.95173 1.01942 1.01648 1.21118 0.95560 0.96184 0.97668 1.21832 1.01373 0.95709 1.01274 1.20364 0.91641 0.95882 0.98462 0.90350 1.22371 0.97603 0.92970 0.94535 1.64810 1.54939 1.02385 1.00879 1.23277 0.95891 0.98032 0.92281 1.22913 1.01832 0.94600 0.95948 1.19348 0.80088 0.91556 0.88653 1.86097 1.28431 1.90957 1.34978 1.21705 1.22233 1.17545 0.94989 0.92103 1.25005 0.95310 0.96438 0.96576 1.69708 1.36840 1.42230 1.05151 0.86478 0.80569 0.81820 0.78541 1.20618 1.21176 1.19788 1.22825 0.97381 0.88700 0.98274 1.19531 0.94651 0.95668 0.93820 1.20852 0.93642 0.99766 0.98769 1.21020 0.94649 0.99723 0.98391 1.21004 0.99322 0.99852 0.94891 1.21037 0.94064 1.00138 0.98358 1.20958 0.94430 0.99895 0.97606 0.92842 0.92349 0.92658 0.91133 0.92850 0.92360 0.93079 0.94659 0.91341 0.91972 0.95175 0.91878 0.91535 0.76858 0.92498 0.94914 0.90581 0.86773 0.86767 0.86844 0.86691 0.86750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.77 37.16 0.33 -1.22 16 2 C -0.09 -0.93 2.28 -90.62 -0.21 -1.14 16 3 C -0.14 -1.44 8.89 37.16 0.33 -1.11 16 4 C -0.04 -0.59 1.42 -91.77 -0.13 -0.72 16 5 H 0.08 1.09 6.47 -51.93 -0.34 0.75 16 6 C 0.05 0.84 3.92 -3.82 -0.01 0.83 16 7 N -0.51 -9.79 5.02 -230.45 -1.16 -10.95 16 8 C 0.03 0.65 5.33 -1.89 -0.01 0.64 16 9 C -0.11 -2.70 5.30 -24.87 -0.13 -2.83 16 10 C 0.24 6.15 0.99 -90.42 -0.09 6.06 16 11 O -0.60 -15.71 12.94 -35.23 -0.46 -16.17 16 12 C -0.53 -14.43 8.12 -34.44 -0.28 -14.71 16 13 H 0.06 1.68 7.35 -52.49 -0.39 1.29 16 14 C 0.07 1.84 5.24 -17.82 -0.09 1.74 16 15 N -0.90 -24.34 10.87 55.43 0.60 -23.74 16 16 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 20 C 0.06 1.24 6.17 -2.75 -0.02 1.23 16 21 C -0.04 -0.50 3.02 -104.62 -0.32 -0.82 16 22 C -0.11 -1.48 8.72 -39.58 -0.35 -1.83 16 23 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 24 C -0.13 -1.65 10.05 -39.58 -0.40 -2.05 16 25 C -0.12 -1.53 10.05 -39.59 -0.40 -1.92 16 26 C -0.11 -1.53 9.67 -39.58 -0.38 -1.91 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.64 6.76 -51.93 -0.35 0.29 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.75 7.54 -51.93 -0.39 0.36 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.62 7.11 -51.93 -0.37 0.25 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.04 0.56 6.34 -51.93 -0.33 0.23 16 35 H 0.07 1.04 7.27 -51.93 -0.38 0.66 16 36 H 0.06 1.12 7.58 -51.93 -0.39 0.73 16 37 H 0.03 0.59 8.02 -51.93 -0.42 0.17 16 38 H 0.06 1.55 7.97 -51.93 -0.41 1.13 16 39 H 0.07 1.69 7.86 -51.93 -0.41 1.29 16 40 H 0.38 10.19 7.31 45.56 0.33 10.52 16 41 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 42 H 0.03 0.72 7.48 -51.93 -0.39 0.33 16 43 H 0.08 1.73 7.40 -51.93 -0.38 1.35 16 44 H 0.11 1.38 7.12 -52.49 -0.37 1.00 16 45 H 0.11 1.19 8.06 -52.49 -0.42 0.77 16 46 H 0.11 1.17 8.06 -52.48 -0.42 0.74 16 47 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 48 H 0.11 1.49 7.95 -52.49 -0.42 1.07 16 LS Contribution 370.23 15.07 5.58 5.58 Total: -1.00 -28.10 370.23 -10.50 -38.60 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -7.50 Total: 12.23 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: -2.55 Total: -21.66 kcal Atomic # 7 Polarization: -34.13 SS G_CDS: -0.55 Total: -34.69 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.46 Total: -16.17 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.10 -10.50 -38.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592521988.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.115 kcal (2) G-P(sol) polarization free energy of solvation -28.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds