Wall clock time and date at job start Tue Mar 31 2020 10:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47153 * 2 1 4 4 H 1.08996 * 109.46725 * 305.00105 * 3 2 1 5 5 N 1.46896 * 109.46540 * 64.99961 * 3 2 1 6 6 C 1.46904 * 110.99751 * 205.99495 * 5 3 2 7 7 C 1.50698 * 109.47347 * 174.76643 * 6 5 3 8 8 C 1.38292 * 119.96588 * 270.02100 * 7 6 5 9 9 C 1.38247 * 120.10947 * 179.97438 * 8 7 6 10 10 C 1.38173 * 120.05412 * 359.77584 * 9 8 7 11 11 C 1.38714 * 119.94302 * 0.47880 * 10 9 8 12 12 O 1.35898 * 120.05209 * 179.77238 * 11 10 9 13 13 C 1.42889 * 117.00355 * 359.72275 * 12 11 10 14 14 C 1.53002 * 109.47436 * 180.02562 * 13 12 11 15 15 C 1.50695 * 109.47431 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00022 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99934 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00348 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99983 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46976 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47305 * 120.00703 * 19 17 15 22 22 H 1.48500 * 109.47133 * 240.00548 * 19 17 15 23 23 C 1.38115 * 119.97515 * 89.99972 * 7 6 5 24 24 C 1.52995 * 109.46914 * 184.99786 * 3 2 1 25 25 C 1.53011 * 117.49366 * 132.78997 * 24 3 2 26 26 C 1.52999 * 117.49941 * 64.13677 * 24 3 2 27 27 H 1.09002 * 109.47085 * 60.00443 * 1 2 3 28 28 H 1.09000 * 109.46752 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47128 * 300.00015 * 1 2 3 30 30 H 1.08997 * 109.47128 * 239.99985 * 2 1 3 31 31 H 1.08997 * 109.47067 * 120.00015 * 2 1 3 32 32 H 1.00895 * 111.00178 * 82.04966 * 5 3 2 33 33 H 1.09001 * 109.47181 * 54.76358 * 6 5 3 34 34 H 1.09004 * 109.47049 * 294.76326 * 6 5 3 35 35 H 1.08002 * 119.95129 * 0.02562 * 8 7 6 36 36 H 1.08000 * 119.97422 * 180.02562 * 9 8 7 37 37 H 1.08000 * 120.02906 * 180.25211 * 10 9 8 38 38 H 1.08995 * 109.47577 * 300.00062 * 13 12 11 39 39 H 1.09002 * 109.47166 * 60.00168 * 13 12 11 40 40 H 1.09005 * 109.47040 * 300.00154 * 14 13 12 41 41 H 1.09002 * 109.47046 * 59.99800 * 14 13 12 42 42 H 0.97003 * 120.00450 * 179.97438 * 18 17 15 43 43 H 1.07995 * 120.03026 * 0.02562 * 23 7 6 44 44 H 1.08990 * 115.55575 * 278.45580 * 24 3 2 45 45 H 1.08990 * 117.49919 * 0.02562 * 25 24 3 46 46 H 1.08998 * 117.49477 * 145.02086 * 25 24 3 47 47 H 1.09003 * 117.49804 * 214.97636 * 26 24 3 48 48 H 1.09004 * 117.50036 * 359.96242 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6513 2.0992 1.2552 6 6 1.5495 3.5540 1.0787 7 6 1.0264 4.1785 2.3465 8 6 -0.3354 4.3373 2.5274 9 6 -0.8185 4.9094 3.6896 10 6 0.0584 5.3198 4.6753 11 6 1.4250 5.1664 4.4939 12 8 2.2897 5.5735 5.4600 13 6 1.7224 6.1567 6.6347 14 6 2.8419 6.5504 7.6004 15 6 2.2436 7.1649 8.8395 16 1 1.1719 7.2642 8.9295 17 6 3.0642 7.5992 9.8587 18 7 4.3691 7.4778 9.7495 19 14 2.3225 8.3615 11.3944 20 1 0.8428 8.3835 11.2709 21 1 2.7079 7.5574 12.5819 22 1 2.8272 9.7493 11.5514 23 6 1.9074 4.5914 3.3268 24 6 3.5648 1.4443 -0.1257 25 6 4.1881 2.3957 -1.1492 26 6 4.1678 0.8888 -1.4174 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.2945 1.8693 1.9978 33 1 0.8675 3.7735 0.2572 34 1 2.5345 3.9623 0.8521 35 1 -1.0227 4.0131 1.7600 36 1 -1.8825 5.0320 3.8288 37 1 -0.3197 5.7629 5.5848 38 1 1.1511 7.0435 6.3605 39 1 1.0634 5.4346 7.1169 40 1 3.4137 5.6638 7.8747 41 1 3.5006 7.2726 7.1180 42 1 4.9465 7.7837 10.4664 43 1 2.9707 4.4673 3.1850 44 1 4.1131 1.2721 0.8004 45 1 3.5119 3.0205 -1.7325 46 1 5.1466 2.8489 -0.8964 47 1 5.1130 0.3513 -1.3411 48 1 3.4783 0.5215 -2.1775 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594979986.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:42 Heat of formation + Delta-G solvation = -13.151115 kcal Electronic energy + Delta-G solvation = -23716.663896 eV Core-core repulsion = 20350.544615 eV Total energy + Delta-G solvation = -3366.119282 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.84459 -38.96847 -37.32256 -35.26776 -33.41648 -33.12382 -30.91021 -30.45013 -29.12149 -26.86845 -25.12948 -24.27377 -22.87705 -22.24950 -21.94572 -21.66673 -20.60806 -20.04476 -17.59644 -16.52186 -16.26841 -15.90548 -15.59440 -15.37794 -15.27227 -14.82907 -14.72515 -14.47948 -14.12390 -13.63211 -13.25096 -13.04303 -12.65218 -12.63235 -12.58512 -12.33500 -12.16323 -11.89194 -11.56267 -11.46091 -11.33728 -11.24568 -11.17255 -10.95582 -10.88444 -10.81087 -10.69451 -10.45411 -10.21016 -9.85155 -9.65847 -9.28915 -8.77959 -8.50258 -8.45555 -7.80798 -6.11057 -4.15574 1.47176 1.72939 3.26107 3.33186 3.36871 3.41273 3.77291 3.87814 4.22049 4.28586 4.40852 4.55411 4.67733 4.81833 4.88344 4.97817 5.01284 5.08044 5.22399 5.25213 5.25472 5.30076 5.34932 5.48088 5.51587 5.53439 5.57989 5.69052 5.72789 5.76346 5.78689 5.84728 5.85925 6.01017 6.04109 6.07928 6.21268 6.23712 6.57757 6.58164 6.73864 6.74894 6.82671 7.02585 7.19377 7.50794 7.63579 7.81537 8.07281 8.23590 8.90279 9.48831 11.00580 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.021688 B = 0.002281 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.745776 B =12274.203417 C =13017.633927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C 0.118 3.882 4 H 0.076 0.924 5 N -0.672 5.672 6 C 0.103 3.897 7 C -0.048 4.048 8 C -0.150 4.150 9 C -0.082 4.082 10 C -0.211 4.211 11 C 0.144 3.856 12 O -0.317 6.317 13 C 0.066 3.934 14 C 0.025 3.975 15 C -0.525 4.525 16 H 0.059 0.941 17 C 0.060 3.940 18 N -0.890 5.890 19 Si 0.899 3.101 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.156 4.156 24 C -0.185 4.185 25 C -0.180 4.180 26 C -0.174 4.174 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.345 0.655 33 H 0.077 0.923 34 H 0.041 0.959 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.129 0.871 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.027 0.973 41 H 0.027 0.973 42 H 0.263 0.737 43 H 0.123 0.877 44 H 0.104 0.896 45 H 0.093 0.907 46 H 0.093 0.907 47 H 0.092 0.908 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.008 -12.751 -23.013 26.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C 0.008 3.992 4 H 0.094 0.906 5 N -0.302 5.302 6 C -0.025 4.025 7 C -0.049 4.049 8 C -0.168 4.168 9 C -0.100 4.100 10 C -0.230 4.230 11 C 0.098 3.902 12 O -0.230 6.230 13 C -0.008 4.008 14 C -0.012 4.012 15 C -0.564 4.564 16 H 0.077 0.923 17 C -0.142 4.142 18 N -0.528 5.528 19 Si 0.726 3.274 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.175 4.175 24 C -0.205 4.205 25 C -0.217 4.217 26 C -0.212 4.212 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.164 0.836 33 H 0.096 0.904 34 H 0.060 0.940 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.147 0.853 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.072 0.928 43 H 0.141 0.859 44 H 0.122 0.878 45 H 0.111 0.889 46 H 0.111 0.889 47 H 0.111 0.889 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.311 -12.820 -22.988 27.067 hybrid contribution 0.524 0.793 1.018 1.393 sum -5.786 -12.026 -21.969 25.706 Atomic orbital electron populations 1.21673 0.95347 1.00809 1.02415 1.21446 0.96413 0.95021 1.01663 1.21260 0.89581 0.95719 0.92627 0.90575 1.60641 1.55168 1.07745 1.06653 1.20845 0.99539 0.87378 0.94782 1.19395 0.93246 0.97393 0.94842 1.20746 0.94538 1.03158 0.98401 1.20893 0.99099 0.96832 0.93168 1.21386 0.92694 1.07251 1.01693 1.19151 0.89010 0.92825 0.89256 1.86162 1.35085 1.74190 1.27584 1.23315 0.99526 0.95411 0.82590 1.19129 0.92786 0.97553 0.91753 1.21009 0.93294 1.40756 1.01297 0.92306 1.24996 0.94810 0.95764 0.98675 1.69985 1.02832 1.46697 1.33274 0.86431 0.79348 0.78935 0.82675 1.19629 1.20828 1.20832 1.20264 0.99944 1.04512 0.92796 1.23269 0.97180 1.05429 0.94629 1.23019 1.02725 0.92853 1.03067 1.22880 1.02603 0.96390 0.99279 0.93592 0.93564 0.91183 0.92107 0.91877 0.83577 0.90419 0.94046 0.86478 0.86255 0.85349 0.93174 0.93146 0.95421 0.95430 0.92760 0.85880 0.87774 0.88871 0.88867 0.88920 0.88739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.80 37.16 0.36 -0.76 16 2 C -0.11 -0.80 5.55 -26.73 -0.15 -0.95 16 3 C 0.12 0.91 2.18 -67.71 -0.15 0.76 16 4 H 0.08 0.60 7.49 -51.93 -0.39 0.21 16 5 N -0.67 -6.18 5.67 -107.99 -0.61 -6.79 16 6 C 0.10 1.02 5.64 -4.97 -0.03 0.99 16 7 C -0.05 -0.61 5.44 -104.65 -0.57 -1.18 16 8 C -0.15 -1.86 9.70 -39.56 -0.38 -2.24 16 9 C -0.08 -1.09 10.04 -39.60 -0.40 -1.49 16 10 C -0.21 -3.36 9.04 -39.43 -0.36 -3.72 16 11 C 0.14 2.54 6.69 -39.21 -0.26 2.28 16 12 O -0.32 -6.61 10.14 -19.42 -0.20 -6.80 16 13 C 0.07 1.42 4.68 37.16 0.17 1.60 16 14 C 0.02 0.66 5.34 -27.88 -0.15 0.51 16 15 C -0.53 -14.71 9.11 -34.44 -0.31 -15.03 16 16 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 19 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 C -0.16 -2.35 9.64 -39.43 -0.38 -2.73 16 24 C -0.19 -1.38 5.11 -90.62 -0.46 -1.85 16 25 C -0.18 -1.30 10.18 -26.69 -0.27 -1.57 16 26 C -0.17 -1.15 9.72 -26.70 -0.26 -1.41 16 27 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.64 7.75 -51.93 -0.40 0.24 16 30 H 0.06 0.40 7.42 -51.93 -0.39 0.02 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.35 3.34 8.40 -39.29 -0.33 3.01 16 33 H 0.08 0.70 7.87 -51.93 -0.41 0.30 16 34 H 0.04 0.41 8.07 -51.93 -0.42 -0.01 16 35 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 37 H 0.13 2.02 6.30 -52.49 -0.33 1.69 16 38 H 0.05 1.04 7.67 -51.93 -0.40 0.64 16 39 H 0.05 1.04 7.65 -51.93 -0.40 0.65 16 40 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 44 H 0.10 0.84 7.97 -51.93 -0.41 0.42 16 45 H 0.09 0.65 8.07 -51.93 -0.42 0.23 16 46 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.09 0.57 7.85 -51.93 -0.41 0.16 16 LS Contribution 393.00 15.07 5.92 5.92 Total: -1.00 -29.61 393.00 -11.33 -40.94 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -8.47 Total: 1.41 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: -3.69 Total: -25.17 kcal Atomic # 7 Polarization: -32.73 SS G_CDS: 0.12 Total: -32.61 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -0.20 Total: -6.80 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.61 -11.33 -40.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594979986.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.792 kcal (2) G-P(sol) polarization free energy of solvation -29.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds