Wall clock time and date at job start Tue Mar 31 2020 08:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47486 * 2 1 4 4 C 1.52996 * 109.47486 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47131 * 180.02562 * 4 3 2 6 6 O 1.42905 * 109.47264 * 180.02562 * 5 4 3 7 7 C 1.35897 * 117.00093 * 180.02562 * 6 5 4 8 8 C 1.38737 * 120.05547 * 359.72645 * 7 6 5 9 9 C 1.38146 * 119.93882 * 179.69816 * 8 7 6 10 10 C 1.38268 * 120.05855 * 0.60059 * 9 8 7 11 11 C 1.50701 * 119.94438 * 179.69891 * 10 9 8 12 12 N 1.46897 * 109.47137 * 269.97429 * 11 10 9 13 13 C 1.47477 * 111.00077 * 265.97382 * 12 11 10 14 14 C 1.53513 * 87.93153 * 221.29624 * 13 12 11 15 15 C 1.50701 * 114.17393 * 139.66898 * 14 13 12 16 16 H 1.08002 * 120.00188 * 266.16628 * 15 14 13 17 17 C 1.37873 * 119.99757 * 86.15582 * 15 14 13 18 18 N 1.31515 * 120.00422 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99945 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47427 * 90.00070 * 19 17 15 21 21 H 1.48503 * 109.47235 * 210.00285 * 19 17 15 22 22 H 1.48505 * 109.47262 * 330.00067 * 19 17 15 23 23 C 1.47479 * 111.00189 * 170.00015 * 12 11 10 24 24 C 1.38265 * 120.10736 * 359.67435 * 10 9 8 25 25 C 1.38141 * 120.06229 * 0.02578 * 24 10 9 26 26 H 1.09001 * 109.46997 * 299.99570 * 1 2 3 27 27 H 1.09004 * 109.47298 * 59.99713 * 1 2 3 28 28 H 1.09000 * 109.47054 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46997 * 240.00430 * 2 1 3 30 30 H 1.09004 * 109.47298 * 120.00287 * 2 1 3 31 31 H 1.09001 * 109.46652 * 60.00218 * 3 2 1 32 32 H 1.09004 * 109.47086 * 300.00416 * 3 2 1 33 33 H 1.09001 * 109.46997 * 60.00430 * 4 3 2 34 34 H 1.08992 * 109.47534 * 300.00484 * 4 3 2 35 35 H 1.09001 * 109.47289 * 60.00050 * 5 4 3 36 36 H 1.09004 * 109.47261 * 300.00306 * 5 4 3 37 37 H 1.08000 * 120.02659 * 359.97438 * 8 7 6 38 38 H 1.07997 * 119.96925 * 180.31667 * 9 8 7 39 39 H 1.09001 * 109.47018 * 29.97541 * 11 10 9 40 40 H 1.08996 * 109.46847 * 149.97179 * 11 10 9 41 41 H 1.08995 * 113.47534 * 336.06402 * 13 12 11 42 42 H 1.09000 * 113.47937 * 106.52844 * 13 12 11 43 43 H 1.09006 * 114.34427 * 272.36495 * 14 13 12 44 44 H 0.97000 * 120.00460 * 180.02562 * 18 17 15 45 45 H 1.09000 * 113.47550 * 253.47638 * 23 12 11 46 46 H 1.09003 * 113.47500 * 23.93756 * 23 12 11 47 47 H 1.08004 * 119.96780 * 180.02562 * 24 10 9 48 48 H 1.07995 * 120.03119 * 180.02562 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8849 0.0000 6 8 5.5091 2.8850 -0.0012 7 6 6.1260 4.0958 -0.0003 8 6 5.3715 5.2601 -0.0040 9 6 6.0012 6.4897 0.0033 10 6 7.3820 6.5607 0.0017 11 6 8.0662 7.9035 0.0027 12 7 8.2873 8.3415 -1.3819 13 6 9.6320 7.9567 -1.8495 14 6 9.7332 9.3350 -2.5179 15 6 11.0872 9.9843 -2.3915 16 1 11.2828 10.6723 -1.5822 17 6 12.0764 9.6999 -3.3088 18 7 11.8383 8.8624 -4.2944 19 14 13.7551 10.5042 -3.1517 20 1 14.6351 9.6532 -2.3110 21 1 14.3579 10.6592 -4.5000 22 1 13.6070 11.8396 -2.5192 23 6 8.7346 9.7461 -1.4269 24 6 8.1361 5.4018 -0.0004 25 6 7.5114 4.1697 -0.0014 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9562 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 3.9330 0.9288 -0.8909 34 1 3.9338 0.9285 0.8890 35 1 3.7171 3.3983 0.8904 36 1 3.7163 3.3994 -0.8895 37 1 4.2929 5.2051 -0.0080 38 1 5.4143 7.3963 0.0056 39 1 7.4386 8.6306 0.5180 40 1 9.0245 7.8225 0.5157 41 1 10.3483 7.8127 -1.0407 42 1 9.6248 7.1294 -2.5592 43 1 9.3298 9.3743 -3.5299 44 1 12.5344 8.6620 -4.9396 45 1 7.9667 10.4352 -1.7783 46 1 9.2115 10.0797 -0.5052 47 1 9.2146 5.4599 -0.0012 48 1 8.1009 3.2649 -0.0026 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597193291.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:40 Heat of formation + Delta-G solvation = -4.506030 kcal Electronic energy + Delta-G solvation = -23417.584395 eV Core-core repulsion = 20051.839992 eV Total energy + Delta-G solvation = -3365.744403 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 4.68 seconds Orbital eigenvalues (eV) -40.15038 -38.98827 -37.52372 -36.12468 -32.88882 -32.13416 -31.12832 -30.83075 -28.12086 -26.63474 -25.24880 -24.74156 -23.23629 -22.69500 -21.74652 -21.32145 -20.56129 -18.59154 -18.10788 -16.67640 -16.65508 -15.94762 -15.46211 -15.35189 -14.86882 -14.43871 -14.38486 -14.08592 -13.98191 -13.75520 -13.68640 -13.33797 -13.01553 -12.96798 -12.46995 -12.02478 -11.91828 -11.75653 -11.59730 -11.57198 -11.45696 -11.18597 -11.09532 -11.01885 -10.90404 -10.76002 -10.71516 -10.52471 -10.22209 -9.71794 -9.24904 -8.93318 -8.82950 -8.43860 -8.01087 -7.86211 -6.04454 -4.09205 1.51411 1.59529 3.08086 3.28941 3.36201 3.39001 3.90837 4.40901 4.42085 4.45004 4.61073 4.74140 4.82466 4.93721 4.99290 5.02099 5.07203 5.12983 5.22458 5.27023 5.31059 5.34215 5.41656 5.48266 5.55851 5.56880 5.63523 5.69081 5.79407 5.82063 5.86469 5.92477 5.97627 6.13416 6.21987 6.33301 6.42223 6.48618 6.53300 6.68947 6.74642 6.87758 6.91693 7.17531 7.23074 7.47237 7.73602 7.92290 8.09898 8.38287 8.94005 9.55756 11.05029 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.033920 B = 0.001987 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.282695 B =14089.741432 C =14309.043841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.118 4.118 4 C -0.119 4.119 5 C 0.060 3.940 6 O -0.319 6.319 7 C 0.118 3.882 8 C -0.210 4.210 9 C -0.066 4.066 10 C -0.093 4.093 11 C 0.059 3.941 12 N -0.479 5.479 13 C 0.007 3.993 14 C 0.041 3.959 15 C -0.517 4.517 16 H 0.057 0.943 17 C 0.067 3.933 18 N -0.886 5.886 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.006 4.006 24 C -0.071 4.071 25 C -0.151 4.151 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.069 0.931 40 H 0.048 0.952 41 H 0.053 0.947 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.262 0.738 45 H 0.061 0.939 46 H 0.054 0.946 47 H 0.127 0.873 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.594 -14.397 10.562 25.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.155 4.155 4 C -0.157 4.157 5 C -0.015 4.015 6 O -0.233 6.233 7 C 0.073 3.927 8 C -0.228 4.228 9 C -0.085 4.085 10 C -0.094 4.094 11 C -0.070 4.070 12 N -0.201 5.201 13 C -0.122 4.122 14 C 0.022 3.978 15 C -0.555 4.555 16 H 0.076 0.924 17 C -0.136 4.136 18 N -0.523 5.523 19 Si 0.718 3.282 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.135 4.135 24 C -0.089 4.089 25 C -0.170 4.170 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.087 0.913 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.071 0.929 45 H 0.080 0.920 46 H 0.072 0.928 47 H 0.145 0.855 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -19.052 -14.897 10.067 26.196 hybrid contribution 1.441 0.682 0.570 1.693 sum -17.611 -14.215 10.636 25.007 Atomic orbital electron populations 1.21780 0.95737 1.01692 1.01891 1.21509 0.95927 0.96439 1.02293 1.21533 0.94015 0.97467 1.02516 1.21554 0.95403 0.94996 1.03722 1.22780 0.78951 0.98481 1.01336 1.86016 1.20877 1.27378 1.89074 1.18924 0.92242 0.83814 0.97714 1.21139 0.99536 0.92432 1.09720 1.20779 0.94041 0.96732 0.96927 1.19746 0.93432 0.95055 1.01145 1.21569 0.98920 0.93029 0.93439 1.68925 1.28537 1.06807 1.15869 1.24094 0.86831 1.02315 0.98959 1.20098 0.93266 0.90548 0.93925 1.21038 0.96104 1.26691 1.11680 0.92441 1.25018 0.98788 0.94903 0.94892 1.69970 1.33584 1.34245 1.14478 0.86623 0.84269 0.79878 0.77396 1.20671 1.21151 1.19830 1.24019 0.98352 0.90425 1.00698 1.20908 0.99973 0.91031 0.97013 1.20357 0.91236 0.98495 1.06884 0.92722 0.92671 0.92710 0.91816 0.91877 0.91668 0.91585 0.90786 0.90892 0.92250 0.92120 0.85983 0.86005 0.91272 0.93351 0.92904 0.91888 0.91810 0.92866 0.92019 0.92820 0.85512 0.85553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.91 37.16 0.37 -0.40 16 2 C -0.12 -0.68 5.93 -26.73 -0.16 -0.84 16 3 C -0.12 -0.70 5.21 -26.73 -0.14 -0.84 16 4 C -0.12 -0.89 5.58 -26.73 -0.15 -1.04 16 5 C 0.06 0.56 4.74 37.16 0.18 0.74 16 6 O -0.32 -4.11 10.14 -19.42 -0.20 -4.31 16 7 C 0.12 1.67 6.69 -39.21 -0.26 1.40 16 8 C -0.21 -2.80 9.04 -39.43 -0.36 -3.16 16 9 C -0.07 -0.96 9.69 -39.60 -0.38 -1.34 16 10 C -0.09 -1.49 5.47 -104.60 -0.57 -2.06 16 11 C 0.06 1.00 4.94 -4.98 -0.02 0.98 16 12 N -0.48 -9.79 6.32 -246.11 -1.55 -11.35 16 13 C 0.01 0.16 7.28 -7.55 -0.05 0.10 16 14 C 0.04 1.03 3.77 -91.24 -0.34 0.68 16 15 C -0.52 -14.06 8.82 -34.44 -0.30 -14.37 16 16 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 17 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 18 N -0.89 -25.63 13.26 55.43 0.74 -24.90 16 19 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 23 C -0.01 -0.13 7.25 -7.55 -0.05 -0.19 16 24 C -0.07 -1.10 9.69 -39.61 -0.38 -1.48 16 25 C -0.15 -2.20 9.99 -39.43 -0.39 -2.59 16 26 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.50 7.67 -51.93 -0.40 0.10 16 36 H 0.06 0.55 7.65 -51.93 -0.40 0.15 16 37 H 0.12 1.32 6.30 -52.49 -0.33 0.99 16 38 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 39 H 0.07 1.07 8.02 -51.93 -0.42 0.66 16 40 H 0.05 0.83 7.24 -51.93 -0.38 0.45 16 41 H 0.05 1.21 7.37 -51.93 -0.38 0.83 16 42 H 0.06 1.53 8.14 -51.93 -0.42 1.11 16 43 H 0.06 1.77 8.11 -51.93 -0.42 1.35 16 44 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.05 1.10 7.87 -51.93 -0.41 0.69 16 47 H 0.13 1.90 8.06 -52.48 -0.42 1.47 16 48 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 390.13 15.07 5.88 5.88 Total: -1.00 -29.36 390.13 -11.89 -41.24 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -8.60 Total: 0.08 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: -3.13 Total: -22.66 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: -0.82 Total: -36.24 kcal Atomic # 8 Polarization: -4.11 SS G_CDS: -0.20 Total: -4.31 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.36 -11.89 -41.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597193291.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.739 kcal (2) G-P(sol) polarization free energy of solvation -29.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.69 seconds