Wall clock time and date at job start Tue Mar 31 2020 08:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47486 * 2 1 4 4 C 1.52996 * 109.47486 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47131 * 180.02562 * 4 3 2 6 6 O 1.42905 * 109.47264 * 180.02562 * 5 4 3 7 7 C 1.35897 * 117.00093 * 180.02562 * 6 5 4 8 8 C 1.38737 * 120.05547 * 359.72645 * 7 6 5 9 9 C 1.38146 * 119.93882 * 179.69816 * 8 7 6 10 10 C 1.38268 * 120.05855 * 0.60059 * 9 8 7 11 11 C 1.50701 * 119.94438 * 179.69891 * 10 9 8 12 12 N 1.46897 * 109.47137 * 269.97429 * 11 10 9 13 13 C 1.47477 * 111.00077 * 265.97382 * 12 11 10 14 14 C 1.53513 * 87.93153 * 221.29624 * 13 12 11 15 15 C 1.50701 * 114.17393 * 139.66898 * 14 13 12 16 16 H 1.08002 * 120.00188 * 266.16628 * 15 14 13 17 17 C 1.37873 * 119.99757 * 86.15582 * 15 14 13 18 18 N 1.31515 * 120.00422 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99945 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47427 * 90.00070 * 19 17 15 21 21 H 1.48503 * 109.47235 * 210.00285 * 19 17 15 22 22 H 1.48505 * 109.47262 * 330.00067 * 19 17 15 23 23 C 1.47479 * 111.00189 * 170.00015 * 12 11 10 24 24 C 1.38265 * 120.10736 * 359.67435 * 10 9 8 25 25 C 1.38141 * 120.06229 * 0.02578 * 24 10 9 26 26 H 1.09001 * 109.46997 * 299.99570 * 1 2 3 27 27 H 1.09004 * 109.47298 * 59.99713 * 1 2 3 28 28 H 1.09000 * 109.47054 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46997 * 240.00430 * 2 1 3 30 30 H 1.09004 * 109.47298 * 120.00287 * 2 1 3 31 31 H 1.09001 * 109.46652 * 60.00218 * 3 2 1 32 32 H 1.09004 * 109.47086 * 300.00416 * 3 2 1 33 33 H 1.09001 * 109.46997 * 60.00430 * 4 3 2 34 34 H 1.08992 * 109.47534 * 300.00484 * 4 3 2 35 35 H 1.09001 * 109.47289 * 60.00050 * 5 4 3 36 36 H 1.09004 * 109.47261 * 300.00306 * 5 4 3 37 37 H 1.08000 * 120.02659 * 359.97438 * 8 7 6 38 38 H 1.07997 * 119.96925 * 180.31667 * 9 8 7 39 39 H 1.09001 * 109.47018 * 29.97541 * 11 10 9 40 40 H 1.08996 * 109.46847 * 149.97179 * 11 10 9 41 41 H 1.08995 * 113.47534 * 336.06402 * 13 12 11 42 42 H 1.09000 * 113.47937 * 106.52844 * 13 12 11 43 43 H 1.09006 * 114.34427 * 272.36495 * 14 13 12 44 44 H 0.97000 * 120.00460 * 180.02562 * 18 17 15 45 45 H 1.09000 * 113.47550 * 253.47638 * 23 12 11 46 46 H 1.09003 * 113.47500 * 23.93756 * 23 12 11 47 47 H 1.08004 * 119.96780 * 180.02562 * 24 10 9 48 48 H 1.07995 * 120.03119 * 180.02562 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8849 0.0000 6 8 5.5091 2.8850 -0.0012 7 6 6.1260 4.0958 -0.0003 8 6 5.3715 5.2601 -0.0040 9 6 6.0012 6.4897 0.0033 10 6 7.3820 6.5607 0.0017 11 6 8.0662 7.9035 0.0027 12 7 8.2873 8.3415 -1.3819 13 6 9.6320 7.9567 -1.8495 14 6 9.7332 9.3350 -2.5179 15 6 11.0872 9.9843 -2.3915 16 1 11.2828 10.6723 -1.5822 17 6 12.0764 9.6999 -3.3088 18 7 11.8383 8.8624 -4.2944 19 14 13.7551 10.5042 -3.1517 20 1 14.6351 9.6532 -2.3110 21 1 14.3579 10.6592 -4.5000 22 1 13.6070 11.8396 -2.5192 23 6 8.7346 9.7461 -1.4269 24 6 8.1361 5.4018 -0.0004 25 6 7.5114 4.1697 -0.0014 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9562 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 3.9330 0.9288 -0.8909 34 1 3.9338 0.9285 0.8890 35 1 3.7171 3.3983 0.8904 36 1 3.7163 3.3994 -0.8895 37 1 4.2929 5.2051 -0.0080 38 1 5.4143 7.3963 0.0056 39 1 7.4386 8.6306 0.5180 40 1 9.0245 7.8225 0.5157 41 1 10.3483 7.8127 -1.0407 42 1 9.6248 7.1294 -2.5592 43 1 9.3298 9.3743 -3.5299 44 1 12.5344 8.6620 -4.9396 45 1 7.9667 10.4352 -1.7783 46 1 9.2115 10.0797 -0.5052 47 1 9.2146 5.4599 -0.0012 48 1 8.1009 3.2649 -0.0026 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597193291.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:35 Heat of formation + Delta-G solvation = -19.857830 kcal Electronic energy + Delta-G solvation = -23418.250099 eV Core-core repulsion = 20051.839992 eV Total energy + Delta-G solvation = -3366.410107 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -41.26433 -40.54912 -38.60803 -36.70587 -34.80535 -33.17233 -32.23082 -31.86909 -29.66501 -27.53441 -26.77140 -26.51343 -24.24690 -24.10875 -22.58461 -21.88783 -21.73620 -20.45442 -19.10366 -18.64129 -17.36898 -17.02219 -16.80027 -16.59513 -16.09423 -16.04468 -15.72134 -15.47704 -14.79408 -14.73947 -14.42656 -14.39121 -14.30736 -13.91312 -13.71364 -13.37738 -13.23553 -13.18654 -12.91089 -12.61250 -12.58130 -12.36783 -12.29503 -12.08155 -11.97171 -11.73697 -11.64355 -11.58136 -11.52574 -11.39983 -11.13967 -10.85735 -10.49587 -9.94449 -9.68580 -9.03116 -8.14370 -6.26104 0.40046 0.45303 1.43064 1.43872 1.54523 2.20263 2.42855 2.75260 3.14830 3.48790 3.76035 3.87666 3.90246 3.95463 3.95902 4.10459 4.19211 4.22260 4.28416 4.34425 4.43575 4.44899 4.48258 4.56569 4.61242 4.63243 4.74755 4.77879 4.83010 4.87520 4.89636 4.97486 4.99625 5.04852 5.09502 5.17490 5.24260 5.28358 5.32196 5.37193 5.39980 5.48258 5.48389 5.63227 5.76951 5.82870 5.85698 6.30078 6.40135 6.47792 6.83653 7.42576 8.95328 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.033920 B = 0.001987 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.282695 B =14089.741432 C =14309.043841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.113 4.113 4 C -0.114 4.114 5 C 0.052 3.948 6 O -0.331 6.331 7 C 0.116 3.884 8 C -0.207 4.207 9 C -0.068 4.068 10 C -0.114 4.114 11 C 0.062 3.938 12 N -0.478 5.478 13 C 0.022 3.978 14 C 0.019 3.981 15 C -0.530 4.530 16 H 0.061 0.939 17 C 0.014 3.986 18 N -0.923 5.923 19 Si 0.958 3.042 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.264 1.264 23 C 0.010 3.990 24 C -0.083 4.083 25 C -0.163 4.163 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.150 0.850 38 H 0.139 0.861 39 H 0.090 0.910 40 H 0.047 0.953 41 H 0.052 0.948 42 H 0.039 0.961 43 H 0.028 0.972 44 H 0.262 0.738 45 H 0.075 0.925 46 H 0.065 0.935 47 H 0.122 0.878 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.845 -14.283 11.972 27.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.150 4.150 4 C -0.152 4.152 5 C -0.023 4.023 6 O -0.245 6.245 7 C 0.071 3.929 8 C -0.225 4.225 9 C -0.087 4.087 10 C -0.115 4.115 11 C -0.066 4.066 12 N -0.201 5.201 13 C -0.108 4.108 14 C 0.000 4.000 15 C -0.568 4.568 16 H 0.079 0.921 17 C -0.185 4.185 18 N -0.561 5.561 19 Si 0.784 3.216 20 H -0.201 1.201 21 H -0.210 1.210 22 H -0.188 1.188 23 C -0.119 4.119 24 C -0.101 4.101 25 C -0.182 4.182 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.167 0.833 38 H 0.156 0.844 39 H 0.109 0.891 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.046 0.954 44 H 0.071 0.929 45 H 0.094 0.906 46 H 0.083 0.917 47 H 0.140 0.860 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -20.322 -14.782 11.494 27.633 hybrid contribution 1.717 0.561 0.142 1.812 sum -18.604 -14.220 11.636 26.149 Atomic orbital electron populations 1.21780 0.95288 1.01994 1.02035 1.21514 0.96313 0.96151 1.02268 1.21507 0.92706 0.97862 1.02971 1.21543 0.96404 0.93810 1.03424 1.23071 0.77101 0.99890 1.02206 1.86017 1.22900 1.26857 1.88771 1.19068 0.92272 0.84651 0.96954 1.21412 1.00923 0.91644 1.08547 1.21003 0.93512 0.97920 0.96257 1.19740 0.94297 0.94418 1.03051 1.21577 0.99486 0.94314 0.91219 1.68850 1.26431 1.06170 1.18610 1.23792 0.88560 1.00141 0.98282 1.20057 0.93810 0.92646 0.93522 1.21387 0.97081 1.26633 1.11713 0.92058 1.25848 1.02665 0.95461 0.94572 1.70105 1.34809 1.35813 1.15422 0.85553 0.79521 0.79209 0.77358 1.20066 1.21041 1.18805 1.23846 0.97460 0.91158 0.99413 1.20965 0.99966 0.91575 0.97621 1.20511 0.92024 0.98520 1.07145 0.92449 0.92652 0.92386 0.92038 0.91778 0.90984 0.91337 0.91366 0.90961 0.90932 0.91553 0.83274 0.84353 0.89123 0.93510 0.93011 0.94207 0.95363 0.92903 0.90626 0.91697 0.85952 0.84700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 71.98 0.71 -0.59 16 2 C -0.12 -1.19 5.93 30.59 0.18 -1.01 16 3 C -0.11 -1.13 5.21 30.59 0.16 -0.97 16 4 C -0.11 -1.53 5.58 30.59 0.17 -1.36 16 5 C 0.05 0.86 4.74 71.98 0.34 1.20 16 6 O -0.33 -8.06 10.14 -92.39 -0.94 -8.99 16 7 C 0.12 3.12 6.69 22.51 0.15 3.27 16 8 C -0.21 -5.06 9.04 22.37 0.20 -4.86 16 9 C -0.07 -1.84 9.69 22.25 0.22 -1.63 16 10 C -0.11 -3.55 5.47 -19.85 -0.11 -3.66 16 11 C 0.06 2.03 4.94 85.56 0.42 2.45 16 12 N -0.48 -19.30 6.32 -932.54 -5.89 -25.19 16 13 C 0.02 1.01 7.28 83.57 0.61 1.62 16 14 C 0.02 0.96 3.77 -11.20 -0.04 0.92 16 15 C -0.53 -29.06 8.82 25.60 0.23 -28.83 16 16 H 0.06 3.23 7.81 -2.91 -0.02 3.21 16 17 C 0.01 0.77 5.46 84.65 0.46 1.23 16 18 N -0.92 -54.69 13.26 21.45 0.28 -54.41 16 19 Si 0.96 43.28 29.54 68.60 2.03 45.31 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 22 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 23 C 0.01 0.40 7.25 83.57 0.61 1.01 16 24 C -0.08 -2.56 9.69 22.25 0.22 -2.34 16 25 C -0.16 -4.70 9.99 22.37 0.22 -4.47 16 26 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.05 0.46 8.14 -2.38 -0.02 0.45 16 28 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.07 1.03 7.67 -2.39 -0.02 1.01 16 36 H 0.07 1.04 7.65 -2.38 -0.02 1.02 16 37 H 0.15 2.75 6.30 -2.91 -0.02 2.73 16 38 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 39 H 0.09 2.58 8.02 -2.39 -0.02 2.56 16 40 H 0.05 1.55 7.24 -2.39 -0.02 1.54 16 41 H 0.05 2.41 7.37 -2.39 -0.02 2.39 16 42 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.03 1.63 8.11 -2.38 -0.02 1.61 16 44 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 45 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 46 H 0.06 2.54 7.87 -2.39 -0.02 2.52 16 47 H 0.12 3.76 8.06 -2.91 -0.02 3.73 16 48 H 0.14 3.50 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -63.00 390.13 1.13 -61.87 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 0.90 Total: 19.41 kcal Atomic # 6 Polarization: -42.75 SS G_CDS: 4.75 Total: -38.00 kcal Atomic # 7 Polarization: -73.99 SS G_CDS: -5.60 Total: -79.60 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: -0.94 Total: -8.99 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -63.00 1.13 -61.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597193291.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.012 kcal (2) G-P(sol) polarization free energy of solvation -62.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds