Wall clock time and date at job start Tue Mar 31 2020 08:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46802 * 2 1 4 4 C 1.53000 * 109.46982 * 119.99648 * 2 1 3 5 5 C 1.53002 * 109.46886 * 176.10246 * 4 2 1 6 6 N 1.46500 * 109.46777 * 173.86127 * 5 4 2 7 7 C 1.34777 * 119.99628 * 174.65060 * 6 5 4 8 8 O 1.21611 * 120.00159 * 359.97438 * 7 6 5 9 9 C 1.47439 * 119.99771 * 179.97438 * 7 6 5 10 10 C 1.39226 * 120.28307 * 357.57931 * 9 7 6 11 11 C 1.38221 * 120.09107 * 180.28366 * 10 9 7 12 12 C 1.38824 * 120.67624 * 359.68978 * 11 10 9 13 13 C 1.37599 * 120.56848 * 0.02562 * 12 11 10 14 14 C 1.40702 * 119.88368 * 0.02562 * 13 12 11 15 15 C 1.40894 * 120.32645 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99791 * 148.02337 * 15 14 13 17 17 C 1.40265 * 119.99992 * 328.01489 * 15 14 13 18 18 N 1.30631 * 120.00542 * 342.26079 * 17 15 14 19 19 Si 1.86801 * 120.00193 * 162.26101 * 17 15 14 20 20 H 1.48512 * 109.47083 * 270.00320 * 19 17 15 21 21 H 1.48503 * 109.46864 * 29.99975 * 19 17 15 22 22 H 1.48496 * 109.47476 * 150.00220 * 19 17 15 23 23 C 1.53003 * 109.46633 * 56.10705 * 4 2 1 24 24 C 1.52996 * 109.47495 * 60.61664 * 23 4 2 25 25 C 1.53001 * 109.46685 * 180.61216 * 23 4 2 26 26 H 1.08999 * 109.47019 * 60.96204 * 1 2 3 27 27 H 1.08995 * 109.46941 * 180.96641 * 1 2 3 28 28 H 1.08997 * 109.47078 * 300.96850 * 1 2 3 29 29 H 1.08999 * 109.47102 * 240.00161 * 2 1 3 30 30 H 1.09003 * 109.46523 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47246 * 299.99694 * 3 2 1 32 32 H 1.08999 * 109.47160 * 60.00197 * 3 2 1 33 33 H 1.08999 * 109.47514 * 296.10601 * 4 2 1 34 34 H 1.08997 * 109.47091 * 53.86065 * 5 4 2 35 35 H 1.08995 * 109.47268 * 293.85721 * 5 4 2 36 36 H 0.96992 * 120.00048 * 354.64017 * 6 5 4 37 37 H 1.08000 * 119.95535 * 359.97438 * 10 9 7 38 38 H 1.08003 * 119.66254 * 179.71773 * 11 10 9 39 39 H 1.08000 * 119.71968 * 180.02562 * 12 11 10 40 40 H 1.08002 * 120.05569 * 180.02562 * 13 12 11 41 41 H 0.97002 * 119.99638 * 353.66342 * 18 17 15 42 42 H 1.08995 * 109.47248 * 300.60927 * 23 4 2 43 43 H 1.09005 * 109.47363 * 64.50014 * 24 23 4 44 44 H 1.08996 * 109.47392 * 184.50676 * 24 23 4 45 45 H 1.08999 * 109.46694 * 304.50435 * 24 23 4 46 46 H 1.09007 * 109.47189 * 53.04362 * 25 23 4 47 47 H 1.09003 * 109.47197 * 173.03677 * 25 23 4 48 48 H 1.08999 * 109.47529 * 293.03978 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5669 -0.8066 1.2012 6 7 4.0646 -1.3641 2.4613 7 6 5.3772 -1.6333 2.6071 8 8 6.1482 -1.4139 1.6926 9 6 5.8782 -2.1938 3.8754 10 6 5.0094 -2.4003 4.9436 11 6 5.4845 -2.9205 6.1327 12 6 6.8257 -3.2488 6.2765 13 6 7.7073 -3.0615 5.2368 14 6 7.2495 -2.5325 4.0161 15 6 8.1442 -2.3364 2.9455 16 1 7.7986 -2.4383 1.9274 17 6 9.4837 -2.0086 3.2021 18 7 9.8307 -1.5488 4.3745 19 14 10.7716 -2.2296 1.8672 20 1 11.3478 -3.5955 1.9565 21 1 10.1409 -2.0446 0.5355 22 1 11.8498 -1.2247 2.0482 23 6 1.4516 -2.1326 1.2992 24 6 1.8926 -2.9133 0.0595 25 6 1.9494 -2.8485 2.5564 26 1 -0.3633 0.4988 -0.8985 27 1 -0.3633 -1.0275 0.0173 28 1 -0.3633 0.5288 0.8811 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.7348 -0.1686 2.1379 34 1 3.9822 0.1906 1.0559 35 1 3.8690 -1.4500 0.3749 36 1 3.4497 -1.5392 3.1906 37 1 3.9637 -2.1490 4.8445 38 1 4.8053 -3.0736 6.9584 39 1 7.1802 -3.6546 7.2125 40 1 8.7489 -3.3201 5.3577 41 1 9.1513 -1.3471 5.0368 42 1 0.3635 -2.0720 1.3224 43 1 2.9748 -3.0430 0.0777 44 1 1.4095 -3.8903 0.0544 45 1 1.6078 -2.3625 -0.8370 46 1 1.7438 -2.2316 3.4313 47 1 1.4360 -3.8047 2.6574 48 1 3.0230 -3.0192 2.4763 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601524397.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:25 Heat of formation + Delta-G solvation = -36.796681 kcal Electronic energy + Delta-G solvation = -25764.815165 eV Core-core repulsion = 22397.670535 eV Total energy + Delta-G solvation = -3367.144630 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.79578 -38.34152 -36.76346 -34.35735 -33.85087 -32.84943 -30.23620 -29.39230 -28.26473 -27.39097 -26.96405 -25.29226 -23.72504 -21.92379 -21.20090 -20.80707 -19.72368 -18.71500 -17.95665 -16.53003 -15.86879 -15.45975 -14.80939 -14.74950 -14.43829 -14.12061 -14.00539 -13.66903 -13.49921 -13.42962 -12.92424 -12.73288 -12.51440 -12.41092 -12.25380 -12.14310 -11.88986 -11.80036 -11.59465 -11.47423 -11.21658 -11.11463 -10.90056 -10.84505 -10.71553 -10.40304 -10.37058 -10.33195 -10.14594 -10.06481 -9.57102 -9.10539 -8.44412 -8.16619 -7.77195 -7.60101 -7.10959 -4.45505 2.26610 2.74747 3.20672 3.32352 3.42735 3.98008 4.05032 4.10622 4.59265 4.66411 4.68907 4.77271 4.95309 5.16381 5.24478 5.40669 5.46659 5.49530 5.51408 5.59783 5.63747 5.72329 5.74104 5.81301 5.85318 5.91280 5.95476 5.97764 6.03026 6.07964 6.12121 6.14157 6.19475 6.25859 6.36208 6.41159 6.51952 6.57856 6.74037 7.01232 7.18861 7.29925 7.51445 7.62682 7.74264 7.91282 8.11275 8.23328 8.41919 8.75511 8.88894 9.41658 10.05124 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.016010 B = 0.004247 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.519467 B = 6592.039594 C = 7642.356336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.152 4.152 4 C -0.091 4.091 5 C 0.125 3.875 6 N -0.749 5.749 7 C 0.559 3.441 8 O -0.539 6.539 9 C -0.266 4.266 10 C -0.044 4.044 11 C -0.261 4.261 12 C -0.075 4.075 13 C -0.204 4.204 14 C 0.120 3.880 15 C -0.465 4.465 16 H 0.109 0.891 17 C 0.030 3.970 18 N -0.796 5.796 19 Si 1.073 2.927 20 H -0.275 1.275 21 H -0.272 1.272 22 H -0.277 1.277 23 C -0.089 4.089 24 C -0.152 4.152 25 C -0.174 4.174 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.396 0.604 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.299 0.701 42 H 0.070 0.930 43 H 0.062 0.938 44 H 0.050 0.950 45 H 0.056 0.944 46 H 0.051 0.949 47 H 0.051 0.949 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.044 1.136 -5.463 16.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 C -0.210 4.210 4 C -0.110 4.110 5 C 0.001 3.999 6 N -0.407 5.407 7 C 0.353 3.647 8 O -0.418 6.418 9 C -0.271 4.271 10 C -0.062 4.062 11 C -0.280 4.280 12 C -0.094 4.094 13 C -0.223 4.223 14 C 0.115 3.885 15 C -0.492 4.492 16 H 0.126 0.874 17 C -0.191 4.191 18 N -0.420 5.420 19 Si 0.896 3.104 20 H -0.201 1.201 21 H -0.197 1.197 22 H -0.202 1.202 23 C -0.107 4.107 24 C -0.210 4.210 25 C -0.231 4.231 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.235 0.765 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.126 0.874 41 H 0.114 0.886 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.070 0.930 47 H 0.070 0.930 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.836 1.450 -6.392 14.413 hybrid contribution -2.130 -0.140 0.991 2.353 sum -14.966 1.310 -5.401 15.965 Atomic orbital electron populations 1.21898 0.95292 1.01842 1.01477 1.21093 0.95599 0.96068 0.98054 1.21935 1.01745 0.95804 1.01479 1.21501 0.94895 0.96004 0.98553 1.21302 0.92001 0.98762 0.87841 1.46598 1.09348 1.68300 1.16478 1.18401 0.80662 0.77441 0.88178 1.90660 1.55088 1.53595 1.42487 1.19392 0.96101 1.17234 0.94368 1.20700 0.96267 0.96014 0.93267 1.20224 0.95522 1.14491 0.97802 1.20732 0.93631 0.97982 0.97068 1.21281 0.99113 1.06852 0.95103 1.17507 0.90878 0.88071 0.91999 1.21325 0.94476 1.36148 0.97231 0.87353 1.27290 0.99697 0.92129 1.00020 1.70355 1.40675 1.25851 1.05076 0.83528 0.74540 0.77731 0.74610 1.20059 1.19709 1.20163 1.21143 0.99727 0.94151 0.95677 1.21962 1.02183 0.99493 0.97315 1.22438 1.04122 0.99871 0.96684 0.92944 0.92247 0.92822 0.90670 0.92000 0.92868 0.92781 0.90912 0.92396 0.91548 0.76537 0.89329 0.88980 0.88942 0.87379 0.88633 0.91163 0.91939 0.93091 0.92533 0.93001 0.93007 0.89567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.77 37.16 0.33 -0.89 16 2 C -0.09 -0.87 2.06 -90.62 -0.19 -1.05 16 3 C -0.15 -1.50 8.94 37.16 0.33 -1.17 16 4 C -0.09 -1.02 1.52 -90.62 -0.14 -1.16 16 5 C 0.12 1.89 4.66 -4.04 -0.02 1.87 16 6 N -0.75 -13.21 3.46 -61.38 -0.21 -13.42 16 7 C 0.56 12.97 7.73 -12.51 -0.10 12.87 16 8 O -0.54 -14.32 13.50 5.27 0.07 -14.25 16 9 C -0.27 -6.49 5.92 -104.36 -0.62 -7.11 16 10 C -0.04 -0.92 9.53 -39.22 -0.37 -1.30 16 11 C -0.26 -5.50 10.03 -39.37 -0.39 -5.89 16 12 C -0.08 -1.68 10.01 -39.60 -0.40 -2.07 16 13 C -0.20 -5.13 7.80 -38.88 -0.30 -5.44 16 14 C 0.12 3.21 5.25 -106.54 -0.56 2.65 16 15 C -0.47 -12.87 7.77 -37.82 -0.29 -13.16 16 16 H 0.11 3.14 5.76 -52.48 -0.30 2.84 16 17 C 0.03 0.79 5.09 -17.30 -0.09 0.70 16 18 N -0.80 -21.42 12.45 55.56 0.69 -20.73 16 19 Si 1.07 22.75 29.97 -169.99 -5.09 17.66 16 20 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 22 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 23 C -0.09 -0.95 2.31 -90.62 -0.21 -1.16 16 24 C -0.15 -1.67 8.48 37.16 0.31 -1.36 16 25 C -0.17 -2.08 7.52 37.16 0.28 -1.81 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.47 6.29 -51.93 -0.33 0.14 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.75 6.56 -51.93 -0.34 0.41 16 30 H 0.06 0.69 6.40 -51.93 -0.33 0.35 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.93 6.25 -51.93 -0.32 0.61 16 35 H 0.07 1.08 6.19 -51.93 -0.32 0.76 16 36 H 0.40 6.18 3.49 -40.82 -0.14 6.03 16 37 H 0.09 1.56 6.40 -52.49 -0.34 1.23 16 38 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 39 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 40 H 0.11 2.78 6.69 -52.49 -0.35 2.42 16 41 H 0.30 8.24 6.37 -40.82 -0.26 7.98 16 42 H 0.07 0.67 6.30 -51.93 -0.33 0.34 16 43 H 0.06 0.82 6.53 -51.93 -0.34 0.48 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.55 6.30 -51.93 -0.33 0.23 16 46 H 0.05 0.58 7.43 -51.92 -0.39 0.19 16 47 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.09 1.27 5.55 -51.93 -0.29 0.98 16 LS Contribution 359.71 15.07 5.42 5.42 Total: -1.00 -29.30 359.71 -8.85 -38.16 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -7.31 Total: 12.63 kcal Atomic # 6 Polarization: -23.04 SS G_CDS: -2.42 Total: -25.47 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: 0.48 Total: -34.15 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: 0.07 Total: -14.25 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.09 Total: 17.66 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.30 -8.85 -38.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601524397.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.361 kcal (2) G-P(sol) polarization free energy of solvation -29.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds