Wall clock time and date at job start Tue Mar 31 2020 08:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46802 * 2 1 4 4 C 1.53000 * 109.46982 * 119.99648 * 2 1 3 5 5 C 1.53002 * 109.46886 * 176.10246 * 4 2 1 6 6 N 1.46500 * 109.46777 * 173.86127 * 5 4 2 7 7 C 1.34777 * 119.99628 * 174.65060 * 6 5 4 8 8 O 1.21611 * 120.00159 * 359.97438 * 7 6 5 9 9 C 1.47439 * 119.99771 * 179.97438 * 7 6 5 10 10 C 1.39226 * 120.28307 * 357.57931 * 9 7 6 11 11 C 1.38221 * 120.09107 * 180.28366 * 10 9 7 12 12 C 1.38824 * 120.67624 * 359.68978 * 11 10 9 13 13 C 1.37599 * 120.56848 * 0.02562 * 12 11 10 14 14 C 1.40702 * 119.88368 * 0.02562 * 13 12 11 15 15 C 1.40894 * 120.32645 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99791 * 148.02337 * 15 14 13 17 17 C 1.40265 * 119.99992 * 328.01489 * 15 14 13 18 18 N 1.30631 * 120.00542 * 342.26079 * 17 15 14 19 19 Si 1.86801 * 120.00193 * 162.26101 * 17 15 14 20 20 H 1.48512 * 109.47083 * 270.00320 * 19 17 15 21 21 H 1.48503 * 109.46864 * 29.99975 * 19 17 15 22 22 H 1.48496 * 109.47476 * 150.00220 * 19 17 15 23 23 C 1.53003 * 109.46633 * 56.10705 * 4 2 1 24 24 C 1.52996 * 109.47495 * 60.61664 * 23 4 2 25 25 C 1.53001 * 109.46685 * 180.61216 * 23 4 2 26 26 H 1.08999 * 109.47019 * 60.96204 * 1 2 3 27 27 H 1.08995 * 109.46941 * 180.96641 * 1 2 3 28 28 H 1.08997 * 109.47078 * 300.96850 * 1 2 3 29 29 H 1.08999 * 109.47102 * 240.00161 * 2 1 3 30 30 H 1.09003 * 109.46523 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47246 * 299.99694 * 3 2 1 32 32 H 1.08999 * 109.47160 * 60.00197 * 3 2 1 33 33 H 1.08999 * 109.47514 * 296.10601 * 4 2 1 34 34 H 1.08997 * 109.47091 * 53.86065 * 5 4 2 35 35 H 1.08995 * 109.47268 * 293.85721 * 5 4 2 36 36 H 0.96992 * 120.00048 * 354.64017 * 6 5 4 37 37 H 1.08000 * 119.95535 * 359.97438 * 10 9 7 38 38 H 1.08003 * 119.66254 * 179.71773 * 11 10 9 39 39 H 1.08000 * 119.71968 * 180.02562 * 12 11 10 40 40 H 1.08002 * 120.05569 * 180.02562 * 13 12 11 41 41 H 0.97002 * 119.99638 * 353.66342 * 18 17 15 42 42 H 1.08995 * 109.47248 * 300.60927 * 23 4 2 43 43 H 1.09005 * 109.47363 * 64.50014 * 24 23 4 44 44 H 1.08996 * 109.47392 * 184.50676 * 24 23 4 45 45 H 1.08999 * 109.46694 * 304.50435 * 24 23 4 46 46 H 1.09007 * 109.47189 * 53.04362 * 25 23 4 47 47 H 1.09003 * 109.47197 * 173.03677 * 25 23 4 48 48 H 1.08999 * 109.47529 * 293.03978 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5669 -0.8066 1.2012 6 7 4.0646 -1.3641 2.4613 7 6 5.3772 -1.6333 2.6071 8 8 6.1482 -1.4139 1.6926 9 6 5.8782 -2.1938 3.8754 10 6 5.0094 -2.4003 4.9436 11 6 5.4845 -2.9205 6.1327 12 6 6.8257 -3.2488 6.2765 13 6 7.7073 -3.0615 5.2368 14 6 7.2495 -2.5325 4.0161 15 6 8.1442 -2.3364 2.9455 16 1 7.7986 -2.4383 1.9274 17 6 9.4837 -2.0086 3.2021 18 7 9.8307 -1.5488 4.3745 19 14 10.7716 -2.2296 1.8672 20 1 11.3478 -3.5955 1.9565 21 1 10.1409 -2.0446 0.5355 22 1 11.8498 -1.2247 2.0482 23 6 1.4516 -2.1326 1.2992 24 6 1.8926 -2.9133 0.0595 25 6 1.9494 -2.8485 2.5564 26 1 -0.3633 0.4988 -0.8985 27 1 -0.3633 -1.0275 0.0173 28 1 -0.3633 0.5288 0.8811 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.7348 -0.1686 2.1379 34 1 3.9822 0.1906 1.0559 35 1 3.8690 -1.4500 0.3749 36 1 3.4497 -1.5392 3.1906 37 1 3.9637 -2.1490 4.8445 38 1 4.8053 -3.0736 6.9584 39 1 7.1802 -3.6546 7.2125 40 1 8.7489 -3.3201 5.3577 41 1 9.1513 -1.3471 5.0368 42 1 0.3635 -2.0720 1.3224 43 1 2.9748 -3.0430 0.0777 44 1 1.4095 -3.8903 0.0544 45 1 1.6078 -2.3625 -0.8370 46 1 1.7438 -2.2316 3.4313 47 1 1.4360 -3.8047 2.6574 48 1 3.0230 -3.0192 2.4763 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601524397.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:07 Heat of formation + Delta-G solvation = -51.314584 kcal Electronic energy + Delta-G solvation = -25765.444709 eV Core-core repulsion = 22397.670535 eV Total energy + Delta-G solvation = -3367.774174 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 12.75 seconds Orbital eigenvalues (eV) -41.21677 -39.80265 -38.51330 -36.01029 -35.27080 -34.08516 -31.98842 -31.22977 -29.48504 -28.28705 -27.80899 -27.13472 -25.10023 -23.55324 -22.70292 -21.98118 -21.30986 -20.18449 -19.51103 -17.99444 -17.15343 -16.95045 -16.53561 -16.01237 -15.88956 -15.61593 -15.45207 -15.22132 -14.91853 -14.65082 -14.34190 -13.95245 -13.83568 -13.69020 -13.47305 -13.36057 -13.02919 -12.98496 -12.86032 -12.71134 -12.59703 -12.48287 -12.33900 -12.07926 -12.06446 -11.94598 -11.72703 -11.46836 -11.31146 -11.18795 -11.02282 -10.98100 -10.30736 -9.80112 -9.57410 -9.50667 -9.07794 -6.47395 0.40526 0.89948 1.44743 1.61390 1.75892 2.26828 2.29749 2.48835 2.74305 3.57181 3.69243 3.73827 3.86046 4.15069 4.19678 4.27765 4.30981 4.41890 4.44663 4.45533 4.50317 4.65479 4.71672 4.74528 4.81934 4.85214 4.87429 4.94295 4.98177 5.03598 5.06727 5.09637 5.13915 5.18520 5.24494 5.33574 5.37132 5.42755 5.46822 5.51537 5.61766 5.64130 5.67732 5.72345 5.90228 5.97777 6.20087 6.33417 6.70141 6.85655 6.94414 7.64256 8.03564 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.016010 B = 0.004247 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.519467 B = 6592.039594 C = 7642.356336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 C -0.153 4.153 4 C -0.080 4.080 5 C 0.124 3.876 6 N -0.724 5.724 7 C 0.552 3.448 8 O -0.583 6.583 9 C -0.284 4.284 10 C -0.042 4.042 11 C -0.245 4.245 12 C -0.071 4.071 13 C -0.229 4.229 14 C 0.095 3.905 15 C -0.510 4.510 16 H 0.083 0.917 17 C -0.003 4.003 18 N -0.818 5.818 19 Si 1.117 2.883 20 H -0.255 1.255 21 H -0.276 1.276 22 H -0.266 1.266 23 C -0.084 4.084 24 C -0.151 4.151 25 C -0.176 4.176 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.040 0.960 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.046 0.954 35 H 0.051 0.949 36 H 0.408 0.592 37 H 0.130 0.870 38 H 0.137 0.863 39 H 0.124 0.876 40 H 0.091 0.909 41 H 0.284 0.716 42 H 0.097 0.903 43 H 0.031 0.969 44 H 0.060 0.940 45 H 0.068 0.932 46 H 0.065 0.935 47 H 0.062 0.938 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.548 0.987 -4.486 19.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.106 4.106 3 C -0.210 4.210 4 C -0.099 4.099 5 C 0.000 4.000 6 N -0.381 5.381 7 C 0.345 3.655 8 O -0.465 6.465 9 C -0.289 4.289 10 C -0.060 4.060 11 C -0.264 4.264 12 C -0.090 4.090 13 C -0.248 4.248 14 C 0.091 3.909 15 C -0.538 4.538 16 H 0.101 0.899 17 C -0.219 4.219 18 N -0.443 5.443 19 Si 0.935 3.065 20 H -0.179 1.179 21 H -0.201 1.201 22 H -0.191 1.191 23 C -0.102 4.102 24 C -0.208 4.208 25 C -0.233 4.233 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.250 0.750 37 H 0.148 0.852 38 H 0.154 0.846 39 H 0.142 0.858 40 H 0.109 0.891 41 H 0.097 0.903 42 H 0.115 0.885 43 H 0.050 0.950 44 H 0.079 0.921 45 H 0.087 0.913 46 H 0.084 0.916 47 H 0.081 0.919 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.402 1.294 -5.385 17.312 hybrid contribution -1.330 -0.119 0.782 1.547 sum -17.732 1.175 -4.603 18.357 Atomic orbital electron populations 1.21861 0.93316 1.02552 1.02294 1.21080 0.97080 0.95511 0.96881 1.21936 1.00408 0.96270 1.02391 1.21469 0.91372 0.97064 0.99954 1.21460 0.95055 0.97390 0.86053 1.46386 1.07490 1.66539 1.17722 1.18484 0.82131 0.77360 0.87501 1.90639 1.56754 1.55419 1.43722 1.19805 0.96047 1.17013 0.96017 1.21102 0.97832 0.94863 0.92222 1.20794 0.95477 1.11435 0.98654 1.21149 0.93969 0.96578 0.97299 1.21237 0.99121 1.08562 0.95920 1.17901 0.92188 0.88165 0.92631 1.21243 0.96025 1.40132 0.96407 0.89945 1.28479 1.01203 0.90873 1.01298 1.70460 1.39752 1.28422 1.05649 0.82993 0.72653 0.78915 0.71940 1.17917 1.20110 1.19061 1.21159 1.01089 0.93155 0.94834 1.21945 1.00187 1.00432 0.98260 1.22416 1.02009 1.01034 0.97868 0.92026 0.91535 0.92215 0.91115 0.94097 0.91600 0.92271 0.89903 0.93557 0.93095 0.75024 0.85213 0.84552 0.85760 0.89085 0.90283 0.88484 0.95028 0.92131 0.91320 0.91608 0.91887 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 8.77 71.98 0.63 -1.20 16 2 C -0.09 -1.50 2.06 -10.79 -0.02 -1.52 16 3 C -0.15 -2.79 8.94 71.98 0.64 -2.15 16 4 C -0.08 -1.63 1.52 -10.79 -0.02 -1.65 16 5 C 0.12 3.77 4.66 86.38 0.40 4.17 16 6 N -0.72 -25.42 3.46 -466.36 -1.61 -27.03 16 7 C 0.55 26.46 7.73 86.67 0.67 27.13 16 8 O -0.58 -32.95 13.50 -4.06 -0.05 -33.01 16 9 C -0.28 -14.05 5.92 -19.70 -0.12 -14.16 16 10 C -0.04 -1.66 9.53 22.50 0.21 -1.45 16 11 C -0.24 -9.38 10.03 22.41 0.22 -9.16 16 12 C -0.07 -3.05 10.01 22.26 0.22 -2.82 16 13 C -0.23 -11.79 7.80 22.72 0.18 -11.62 16 14 C 0.10 5.31 5.25 -21.11 -0.11 5.20 16 15 C -0.51 -30.18 7.77 23.41 0.18 -30.00 16 16 H 0.08 5.19 5.76 -2.91 -0.02 5.17 16 17 C 0.00 -0.18 5.09 85.36 0.43 0.25 16 18 N -0.82 -46.36 12.45 21.88 0.27 -46.09 16 19 Si 1.12 48.19 29.97 68.60 2.06 50.25 16 20 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 21 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 22 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 23 C -0.08 -1.57 2.31 -10.79 -0.02 -1.59 16 24 C -0.15 -3.10 8.48 71.98 0.61 -2.49 16 25 C -0.18 -3.73 7.52 71.98 0.54 -3.19 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.07 0.77 6.29 -2.39 -0.02 0.76 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.07 1.30 6.56 -2.39 -0.02 1.29 16 30 H 0.04 0.91 6.40 -2.39 -0.02 0.89 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.05 1.53 6.25 -2.39 -0.01 1.52 16 35 H 0.05 1.73 6.19 -2.39 -0.01 1.72 16 36 H 0.41 11.95 3.49 -92.71 -0.32 11.63 16 37 H 0.13 4.03 6.40 -2.91 -0.02 4.01 16 38 H 0.14 4.12 8.06 -2.91 -0.02 4.09 16 39 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 40 H 0.09 4.91 6.69 -2.91 -0.02 4.89 16 41 H 0.28 16.56 6.37 -92.71 -0.59 15.97 16 42 H 0.10 1.40 6.30 -2.39 -0.02 1.38 16 43 H 0.03 0.84 6.53 -2.38 -0.02 0.82 16 44 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.07 1.23 6.30 -2.39 -0.02 1.21 16 46 H 0.07 1.20 7.43 -2.38 -0.02 1.18 16 47 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.05 1.50 5.55 -2.39 -0.01 1.49 16 Total: -1.00 -69.24 359.71 6.14 -63.10 By element: Atomic # 1 Polarization: 38.20 SS G_CDS: 0.82 Total: 39.02 kcal Atomic # 6 Polarization: -50.90 SS G_CDS: 4.66 Total: -46.24 kcal Atomic # 7 Polarization: -71.78 SS G_CDS: -1.34 Total: -73.12 kcal Atomic # 8 Polarization: -32.95 SS G_CDS: -0.05 Total: -33.01 kcal Atomic # 14 Polarization: 48.19 SS G_CDS: 2.06 Total: 50.25 kcal Total: -69.24 6.14 -63.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601524397.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.785 kcal (2) G-P(sol) polarization free energy of solvation -69.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.75 seconds