Wall clock time and date at job start Tue Mar 31 2020 09:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47508 * 2 1 4 4 O 1.42908 * 109.46999 * 239.99819 * 2 1 3 5 5 C 1.53006 * 109.47114 * 120.00394 * 2 1 3 6 6 N 1.46903 * 109.46984 * 169.81069 * 5 2 1 7 7 C 1.46899 * 110.99794 * 214.59712 * 6 5 2 8 8 C 1.50700 * 109.47425 * 73.19476 * 7 6 5 9 9 C 1.38235 * 120.00312 * 269.72639 * 8 7 6 10 10 C 1.38225 * 120.00317 * 179.76145 * 9 8 7 11 11 C 1.38237 * 120.00100 * 0.50912 * 10 9 8 12 12 C 1.38231 * 119.99917 * 359.74544 * 11 10 9 13 13 C 1.38236 * 119.99823 * 359.97438 * 12 11 10 14 14 C 1.46894 * 111.00273 * 90.64152 * 6 5 2 15 15 C 1.53002 * 109.46974 * 69.10457 * 14 6 5 16 16 C 1.50705 * 115.54877 * 64.08002 * 15 14 6 17 17 H 1.08002 * 119.99787 * 232.98582 * 16 15 14 18 18 C 1.37876 * 120.00169 * 52.70798 * 16 15 14 19 19 N 1.31520 * 119.99843 * 1.61893 * 18 16 15 20 20 Si 1.86795 * 119.99973 * 181.61835 * 18 16 15 21 21 H 1.48498 * 109.47398 * 60.00088 * 20 18 16 22 22 H 1.48506 * 109.46932 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46913 * 299.99651 * 20 18 16 24 24 C 1.53001 * 117.50140 * 209.74764 * 15 14 6 25 25 C 1.52995 * 117.50229 * 278.40818 * 15 14 6 26 26 H 1.09006 * 109.46968 * 299.99621 * 1 2 3 27 27 H 1.08997 * 109.47501 * 59.99906 * 1 2 3 28 28 H 1.09006 * 109.47276 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47142 * 185.13854 * 3 2 1 30 30 H 1.08996 * 109.47118 * 305.13808 * 3 2 1 31 31 H 1.09002 * 109.46619 * 65.14243 * 3 2 1 32 32 H 0.96700 * 114.00086 * 304.99609 * 4 2 1 33 33 H 1.09002 * 109.47007 * 49.81129 * 5 2 1 34 34 H 1.08992 * 109.47026 * 289.81087 * 5 2 1 35 35 H 1.09003 * 109.46950 * 193.19450 * 7 6 5 36 36 H 1.09000 * 109.47302 * 313.19115 * 7 6 5 37 37 H 1.08004 * 119.99591 * 359.97438 * 9 8 7 38 38 H 1.08003 * 120.00045 * 180.23353 * 10 9 8 39 39 H 1.08002 * 119.99894 * 179.72092 * 11 10 9 40 40 H 1.07996 * 120.00374 * 179.97438 * 12 11 10 41 41 H 1.08001 * 119.99736 * 179.97438 * 13 12 11 42 42 H 1.08997 * 109.47066 * 309.10713 * 14 6 5 43 43 H 1.08996 * 109.47374 * 189.10367 * 14 6 5 44 44 H 0.97001 * 119.99555 * 184.98860 * 19 18 16 45 45 H 1.09003 * 117.49833 * 215.00559 * 24 15 14 46 46 H 1.09006 * 117.49379 * 0.02562 * 24 15 14 47 47 H 1.09001 * 117.49776 * 359.97438 * 25 15 14 48 48 H 1.08994 * 117.50008 * 144.97193 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0400 -0.7214 1.2492 6 7 3.4884 -0.9372 1.1330 7 6 3.8832 -2.2071 1.7571 8 6 3.4361 -3.3543 0.8880 9 6 2.1897 -3.9209 1.0785 10 6 1.7777 -4.9699 0.2782 11 6 2.6163 -5.4593 -0.7058 12 6 3.8648 -4.8962 -0.8929 13 6 4.2745 -3.8433 -0.0963 14 6 4.2363 0.1878 1.7099 15 6 4.0573 0.1934 3.2294 16 6 4.6204 -1.0016 3.9546 17 1 3.9952 -1.5679 4.6291 18 6 5.9320 -1.3755 3.7527 19 7 6.7009 -0.6705 2.9517 20 14 6.6170 -2.8834 4.6167 21 1 5.8367 -4.0813 4.2152 22 1 8.0403 -3.0685 4.2354 23 1 6.5190 -2.6986 6.0869 24 6 4.1175 1.5455 3.9429 25 6 2.7783 0.8205 3.7879 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 3.1261 1.4437 -0.0920 30 1 1.6036 1.9822 -0.8404 31 1 1.7538 1.9289 0.9325 32 1 1.6597 -1.5703 -1.2724 33 1 1.5358 -1.6831 1.3447 34 1 1.8327 -0.1135 2.1298 35 1 4.9672 -2.2360 1.8677 36 1 3.4155 -2.2907 2.7381 37 1 1.5364 -3.5417 1.8505 38 1 0.8024 -5.4101 0.4246 39 1 2.2961 -6.2819 -1.3281 40 1 4.5201 -5.2787 -1.6613 41 1 5.2501 -3.4036 -0.2422 42 1 3.8609 1.1238 1.2964 43 1 5.2941 0.0826 1.4691 44 1 7.6007 -0.9733 2.7527 45 1 4.5643 1.5707 4.9368 46 1 4.2842 2.4312 3.3297 47 1 2.0646 1.2294 3.0728 48 1 2.3440 0.3684 4.6795 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602802427.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:21:48 Heat of formation + Delta-G solvation = 15.455541 kcal Electronic energy + Delta-G solvation = -27097.141922 eV Core-core repulsion = 23732.263118 eV Total energy + Delta-G solvation = -3364.878804 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.36280 -38.20649 -36.83961 -34.22656 -32.47234 -31.79834 -30.61367 -30.47809 -27.29314 -26.67228 -25.74265 -25.22792 -22.13429 -21.93506 -21.38852 -20.25724 -19.63996 -18.98191 -16.47458 -16.21992 -15.85989 -15.11084 -14.97885 -14.74435 -14.57722 -14.24803 -13.91697 -13.68549 -13.33759 -12.99864 -12.86893 -12.33435 -12.30948 -12.18008 -11.97626 -11.83178 -11.70130 -11.55626 -11.16535 -11.14411 -11.00319 -10.76821 -10.59202 -10.54952 -10.33399 -10.11897 -9.99965 -9.93983 -9.56857 -9.23181 -8.90277 -8.72631 -8.48451 -8.20553 -8.10280 -7.04260 -6.10465 -4.10696 1.81716 1.84927 3.23478 3.29657 3.32902 4.21416 4.30670 4.67216 4.95755 5.14202 5.24451 5.28274 5.31213 5.34485 5.42323 5.44861 5.57665 5.73364 5.81807 5.89030 5.95997 6.01445 6.06025 6.08863 6.21883 6.25565 6.33253 6.37885 6.43126 6.46483 6.49579 6.51536 6.60519 6.70696 6.75500 6.85535 6.87907 6.93587 6.97073 7.21100 7.27473 7.31061 7.44952 7.50623 7.59227 7.85965 8.14139 8.24390 8.27877 8.45262 8.79419 9.43573 10.92438 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.010548 B = 0.008175 C = 0.005276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.871368 B = 3424.056347 C = 5305.832328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.137 3.863 3 C -0.140 4.140 4 O -0.543 6.543 5 C 0.005 3.995 6 N -0.501 5.501 7 C 0.096 3.904 8 C -0.054 4.054 9 C -0.124 4.124 10 C -0.127 4.127 11 C -0.138 4.138 12 C -0.124 4.124 13 C -0.101 4.101 14 C 0.079 3.921 15 C 0.026 3.974 16 C -0.487 4.487 17 H 0.056 0.944 18 C 0.074 3.926 19 N -0.873 5.873 20 Si 0.877 3.123 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.277 1.277 24 C -0.189 4.189 25 C -0.216 4.216 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.047 0.953 31 H 0.060 0.940 32 H 0.364 0.636 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.098 0.902 36 H 0.066 0.934 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.119 0.881 42 H 0.048 0.952 43 H 0.109 0.891 44 H 0.263 0.737 45 H 0.074 0.926 46 H 0.063 0.937 47 H 0.070 0.930 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.152 -3.377 -6.245 11.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.096 3.904 3 C -0.197 4.197 4 O -0.347 6.347 5 C -0.124 4.124 6 N -0.222 5.222 7 C -0.031 4.031 8 C -0.055 4.055 9 C -0.143 4.143 10 C -0.145 4.145 11 C -0.156 4.156 12 C -0.142 4.142 13 C -0.119 4.119 14 C -0.048 4.048 15 C 0.024 3.976 16 C -0.525 4.525 17 H 0.074 0.926 18 C -0.129 4.129 19 N -0.509 5.509 20 Si 0.705 3.295 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.203 1.203 24 C -0.228 4.228 25 C -0.253 4.253 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.209 0.791 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.116 0.884 36 H 0.084 0.916 37 H 0.132 0.868 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.137 0.863 42 H 0.066 0.934 43 H 0.127 0.873 44 H 0.074 0.926 45 H 0.093 0.907 46 H 0.082 0.918 47 H 0.088 0.912 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.466 -2.780 -6.853 11.241 hybrid contribution -0.239 -1.261 1.603 2.053 sum -8.704 -4.041 -5.251 10.939 Atomic orbital electron populations 1.22518 0.97204 1.01790 1.02076 1.21122 0.90410 0.92950 0.85964 1.21893 1.03357 0.93720 1.00719 1.86542 1.73392 1.30797 1.43976 1.23151 0.91831 1.00216 0.97227 1.62216 1.02404 1.02197 1.55347 1.21516 1.02898 0.85306 0.93373 1.20530 0.93059 0.96498 0.95401 1.21095 0.96379 0.96924 0.99855 1.21001 0.99300 0.97528 0.96688 1.20943 0.94886 1.00632 0.99179 1.21082 0.96320 0.97124 0.99671 1.21110 1.00066 0.95830 0.94904 1.22121 1.00786 0.90892 0.90996 1.19740 0.92745 0.91818 0.93286 1.20368 0.95418 1.11206 1.25474 0.92582 1.24839 0.96392 0.96423 0.95243 1.69858 1.08672 1.36984 1.35403 0.86868 0.78474 0.83801 0.80404 1.19735 1.21019 1.20268 1.22784 0.99964 0.97979 1.02083 1.22969 0.91434 1.08309 1.02549 0.92054 0.92349 0.92784 0.90243 0.93352 0.92080 0.79050 0.92225 0.91597 0.88367 0.91557 0.86837 0.87090 0.87140 0.86921 0.86269 0.93355 0.87291 0.92646 0.90693 0.91821 0.91214 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.25 8.76 37.15 0.33 -1.92 16 2 C 0.14 2.11 1.18 -90.62 -0.11 2.00 16 3 C -0.14 -2.18 7.64 37.16 0.28 -1.90 16 4 O -0.54 -9.01 12.63 -35.23 -0.45 -9.46 16 5 C 0.00 0.08 4.07 -3.82 -0.02 0.06 16 6 N -0.50 -9.81 4.13 -236.08 -0.97 -10.78 16 7 C 0.10 1.97 3.36 -4.98 -0.02 1.95 16 8 C -0.05 -0.97 5.16 -104.62 -0.54 -1.51 16 9 C -0.12 -1.96 8.38 -39.59 -0.33 -2.29 16 10 C -0.13 -1.75 10.05 -39.59 -0.40 -2.15 16 11 C -0.14 -1.86 10.05 -39.58 -0.40 -2.26 16 12 C -0.12 -1.81 10.05 -39.58 -0.40 -2.21 16 13 C -0.10 -1.72 9.70 -39.58 -0.38 -2.10 16 14 C 0.08 1.72 4.80 -3.83 -0.02 1.70 16 15 C 0.03 0.58 1.34 -155.66 -0.21 0.37 16 16 C -0.49 -12.05 5.52 -34.44 -0.19 -12.25 16 17 H 0.06 1.42 7.69 -52.49 -0.40 1.02 16 18 C 0.07 1.86 3.41 -17.82 -0.06 1.80 16 19 N -0.87 -22.65 11.13 55.43 0.62 -22.04 16 20 Si 0.88 20.03 29.54 -169.99 -5.02 15.01 16 21 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 C -0.19 -4.16 9.93 -26.69 -0.27 -4.42 16 25 C -0.22 -4.38 8.34 -26.70 -0.22 -4.60 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 1.41 5.86 -51.93 -0.30 1.10 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.91 7.63 -51.93 -0.40 0.51 16 32 H 0.36 5.29 9.03 45.56 0.41 5.70 16 33 H 0.06 0.99 5.00 -51.93 -0.26 0.73 16 34 H 0.07 1.19 3.77 -51.93 -0.20 0.99 16 35 H 0.10 2.29 5.59 -51.93 -0.29 2.00 16 36 H 0.07 1.47 5.85 -51.93 -0.30 1.17 16 37 H 0.11 1.72 7.11 -52.48 -0.37 1.35 16 38 H 0.11 1.26 8.06 -52.48 -0.42 0.84 16 39 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 41 H 0.12 2.09 8.06 -52.49 -0.42 1.66 16 42 H 0.05 1.00 4.65 -51.93 -0.24 0.76 16 43 H 0.11 2.72 6.07 -51.93 -0.32 2.41 16 44 H 0.26 6.67 8.32 -40.82 -0.34 6.33 16 45 H 0.07 1.72 8.14 -51.93 -0.42 1.29 16 46 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 47 H 0.07 1.30 6.16 -51.93 -0.32 0.98 16 48 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 LS Contribution 362.41 15.07 5.46 5.46 Total: -1.00 -25.75 362.41 -10.08 -35.83 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: -6.78 Total: 15.70 kcal Atomic # 6 Polarization: -26.78 SS G_CDS: -2.94 Total: -29.72 kcal Atomic # 7 Polarization: -32.46 SS G_CDS: -0.36 Total: -32.82 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: -0.45 Total: -9.46 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -25.75 -10.08 -35.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602802427.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.290 kcal (2) G-P(sol) polarization free energy of solvation -25.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds