Wall clock time and date at job start Tue Mar 31 2020 09:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47508 * 2 1 4 4 O 1.42908 * 109.46999 * 239.99819 * 2 1 3 5 5 C 1.53006 * 109.47114 * 120.00394 * 2 1 3 6 6 N 1.46903 * 109.46984 * 169.81069 * 5 2 1 7 7 C 1.46899 * 110.99794 * 214.59712 * 6 5 2 8 8 C 1.50700 * 109.47425 * 73.19476 * 7 6 5 9 9 C 1.38235 * 120.00312 * 269.72639 * 8 7 6 10 10 C 1.38225 * 120.00317 * 179.76145 * 9 8 7 11 11 C 1.38237 * 120.00100 * 0.50912 * 10 9 8 12 12 C 1.38231 * 119.99917 * 359.74544 * 11 10 9 13 13 C 1.38236 * 119.99823 * 359.97438 * 12 11 10 14 14 C 1.46894 * 111.00273 * 90.64152 * 6 5 2 15 15 C 1.53002 * 109.46974 * 69.10457 * 14 6 5 16 16 C 1.50705 * 115.54877 * 64.08002 * 15 14 6 17 17 H 1.08002 * 119.99787 * 232.98582 * 16 15 14 18 18 C 1.37876 * 120.00169 * 52.70798 * 16 15 14 19 19 N 1.31520 * 119.99843 * 1.61893 * 18 16 15 20 20 Si 1.86795 * 119.99973 * 181.61835 * 18 16 15 21 21 H 1.48498 * 109.47398 * 60.00088 * 20 18 16 22 22 H 1.48506 * 109.46932 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46913 * 299.99651 * 20 18 16 24 24 C 1.53001 * 117.50140 * 209.74764 * 15 14 6 25 25 C 1.52995 * 117.50229 * 278.40818 * 15 14 6 26 26 H 1.09006 * 109.46968 * 299.99621 * 1 2 3 27 27 H 1.08997 * 109.47501 * 59.99906 * 1 2 3 28 28 H 1.09006 * 109.47276 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47142 * 185.13854 * 3 2 1 30 30 H 1.08996 * 109.47118 * 305.13808 * 3 2 1 31 31 H 1.09002 * 109.46619 * 65.14243 * 3 2 1 32 32 H 0.96700 * 114.00086 * 304.99609 * 4 2 1 33 33 H 1.09002 * 109.47007 * 49.81129 * 5 2 1 34 34 H 1.08992 * 109.47026 * 289.81087 * 5 2 1 35 35 H 1.09003 * 109.46950 * 193.19450 * 7 6 5 36 36 H 1.09000 * 109.47302 * 313.19115 * 7 6 5 37 37 H 1.08004 * 119.99591 * 359.97438 * 9 8 7 38 38 H 1.08003 * 120.00045 * 180.23353 * 10 9 8 39 39 H 1.08002 * 119.99894 * 179.72092 * 11 10 9 40 40 H 1.07996 * 120.00374 * 179.97438 * 12 11 10 41 41 H 1.08001 * 119.99736 * 179.97438 * 13 12 11 42 42 H 1.08997 * 109.47066 * 309.10713 * 14 6 5 43 43 H 1.08996 * 109.47374 * 189.10367 * 14 6 5 44 44 H 0.97001 * 119.99555 * 184.98860 * 19 18 16 45 45 H 1.09003 * 117.49833 * 215.00559 * 24 15 14 46 46 H 1.09006 * 117.49379 * 0.02562 * 24 15 14 47 47 H 1.09001 * 117.49776 * 359.97438 * 25 15 14 48 48 H 1.08994 * 117.50008 * 144.97193 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0400 -0.7214 1.2492 6 7 3.4884 -0.9372 1.1330 7 6 3.8832 -2.2071 1.7571 8 6 3.4361 -3.3543 0.8880 9 6 2.1897 -3.9209 1.0785 10 6 1.7777 -4.9699 0.2782 11 6 2.6163 -5.4593 -0.7058 12 6 3.8648 -4.8962 -0.8929 13 6 4.2745 -3.8433 -0.0963 14 6 4.2363 0.1878 1.7099 15 6 4.0573 0.1934 3.2294 16 6 4.6204 -1.0016 3.9546 17 1 3.9952 -1.5679 4.6291 18 6 5.9320 -1.3755 3.7527 19 7 6.7009 -0.6705 2.9517 20 14 6.6170 -2.8834 4.6167 21 1 5.8367 -4.0813 4.2152 22 1 8.0403 -3.0685 4.2354 23 1 6.5190 -2.6986 6.0869 24 6 4.1175 1.5455 3.9429 25 6 2.7783 0.8205 3.7879 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 3.1261 1.4437 -0.0920 30 1 1.6036 1.9822 -0.8404 31 1 1.7538 1.9289 0.9325 32 1 1.6597 -1.5703 -1.2724 33 1 1.5358 -1.6831 1.3447 34 1 1.8327 -0.1135 2.1298 35 1 4.9672 -2.2360 1.8677 36 1 3.4155 -2.2907 2.7381 37 1 1.5364 -3.5417 1.8505 38 1 0.8024 -5.4101 0.4246 39 1 2.2961 -6.2819 -1.3281 40 1 4.5201 -5.2787 -1.6613 41 1 5.2501 -3.4036 -0.2422 42 1 3.8609 1.1238 1.2964 43 1 5.2941 0.0826 1.4691 44 1 7.6007 -0.9733 2.7527 45 1 4.5643 1.5707 4.9368 46 1 4.2842 2.4312 3.3297 47 1 2.0646 1.2294 3.0728 48 1 2.3440 0.3684 4.6795 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602802427.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:21:47 Heat of formation + Delta-G solvation = 1.278873 kcal Electronic energy + Delta-G solvation = -27097.756669 eV Core-core repulsion = 23732.263118 eV Total energy + Delta-G solvation = -3365.493550 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.78719 -39.49789 -38.30823 -35.76885 -34.29939 -33.15846 -31.91470 -31.65743 -28.57210 -28.23878 -27.30488 -26.82498 -23.45848 -23.22660 -23.09494 -21.65929 -20.95771 -20.72538 -18.14004 -17.57579 -17.24170 -16.70558 -16.39445 -16.24384 -15.88631 -15.63114 -15.51613 -15.07736 -14.68894 -14.54740 -14.15054 -13.78773 -13.69889 -13.44348 -13.36654 -13.16767 -13.06410 -12.93765 -12.88868 -12.61900 -12.51012 -12.37454 -12.26572 -11.90843 -11.82776 -11.78040 -11.51920 -11.32041 -11.21448 -10.75511 -10.56290 -10.51345 -9.93381 -9.66503 -9.45909 -8.63417 -8.05581 -6.08225 0.62588 0.65219 1.35894 1.39952 1.43571 2.39390 2.96846 3.10417 3.41749 3.56647 3.84055 4.02705 4.13454 4.18558 4.20222 4.30297 4.32452 4.37760 4.44801 4.55770 4.67691 4.71416 4.76577 4.79398 4.83398 4.86245 4.90909 4.98271 5.02757 5.08688 5.12186 5.18346 5.24735 5.28406 5.32253 5.35679 5.49550 5.51534 5.58328 5.61887 5.68661 5.72928 5.75012 5.98217 6.03852 6.28430 6.37211 6.59302 6.75010 6.86398 7.10778 7.46674 8.95902 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.010548 B = 0.008175 C = 0.005276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.871368 B = 3424.056347 C = 5305.832328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.138 3.862 3 C -0.140 4.140 4 O -0.559 6.559 5 C 0.008 3.992 6 N -0.500 5.500 7 C 0.112 3.888 8 C -0.076 4.076 9 C -0.130 4.130 10 C -0.118 4.118 11 C -0.129 4.129 12 C -0.123 4.123 13 C -0.124 4.124 14 C 0.091 3.909 15 C 0.005 3.995 16 C -0.489 4.489 17 H 0.044 0.956 18 C 0.044 3.956 19 N -0.894 5.894 20 Si 0.919 3.081 21 H -0.271 1.271 22 H -0.286 1.286 23 H -0.278 1.278 24 C -0.197 4.197 25 C -0.187 4.187 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.372 0.628 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.043 0.957 37 H 0.117 0.883 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.134 0.866 41 H 0.099 0.901 42 H 0.058 0.942 43 H 0.071 0.929 44 H 0.259 0.741 45 H 0.059 0.941 46 H 0.073 0.927 47 H 0.093 0.907 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.961 -4.675 -7.389 14.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.097 3.903 3 C -0.197 4.197 4 O -0.364 6.364 5 C -0.121 4.121 6 N -0.221 5.221 7 C -0.016 4.016 8 C -0.077 4.077 9 C -0.149 4.149 10 C -0.136 4.136 11 C -0.147 4.147 12 C -0.141 4.141 13 C -0.142 4.142 14 C -0.037 4.037 15 C 0.003 3.997 16 C -0.526 4.526 17 H 0.062 0.938 18 C -0.157 4.157 19 N -0.532 5.532 20 Si 0.746 3.254 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.203 1.203 24 C -0.236 4.236 25 C -0.224 4.224 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.219 0.781 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.135 0.865 38 H 0.162 0.838 39 H 0.164 0.836 40 H 0.152 0.848 41 H 0.117 0.883 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.092 0.908 47 H 0.111 0.889 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.288 -4.084 -7.992 14.421 hybrid contribution 0.607 -0.904 1.924 2.211 sum -10.682 -4.988 -6.067 13.259 Atomic orbital electron populations 1.22419 0.94389 1.02922 1.03020 1.21153 0.92406 0.92199 0.84575 1.21878 1.01606 0.94399 1.01780 1.86526 1.74061 1.31549 1.44269 1.23202 0.89985 1.00777 0.98093 1.62228 1.03938 1.01212 1.54681 1.21117 1.00343 0.86942 0.93162 1.20304 0.94665 0.96516 0.96180 1.21145 0.95466 0.97737 1.00530 1.21350 1.00571 0.96176 0.95530 1.21363 0.93835 1.00711 0.98829 1.21329 0.97388 0.96005 0.99348 1.21078 0.99520 0.97472 0.96174 1.21853 0.99084 0.92172 0.90591 1.19769 0.94857 0.91402 0.93662 1.20474 0.95288 1.11774 1.25095 0.93805 1.25246 0.96720 0.98009 0.95676 1.69967 1.08611 1.38025 1.36557 0.86212 0.77818 0.81974 0.79420 1.19644 1.21135 1.20331 1.22764 1.01432 0.98061 1.01347 1.22942 0.90763 1.06273 1.02450 0.91161 0.91341 0.91617 0.92958 0.91883 0.91310 0.78099 0.91459 0.92324 0.92101 0.93934 0.86550 0.83827 0.83607 0.84766 0.88278 0.92372 0.91074 0.93123 0.92194 0.90837 0.88863 0.91066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.72 8.76 71.98 0.63 -3.09 16 2 C 0.14 3.99 1.18 -10.79 -0.01 3.98 16 3 C -0.14 -4.16 7.64 71.98 0.55 -3.61 16 4 O -0.56 -17.74 12.63 -148.98 -1.88 -19.62 16 5 C 0.01 0.26 4.07 86.30 0.35 0.61 16 6 N -0.50 -20.03 4.13 -900.81 -3.72 -23.75 16 7 C 0.11 4.77 3.36 85.56 0.29 5.06 16 8 C -0.08 -2.75 5.16 -19.87 -0.10 -2.85 16 9 C -0.13 -3.91 8.38 22.27 0.19 -3.72 16 10 C -0.12 -2.83 10.05 22.27 0.22 -2.61 16 11 C -0.13 -2.98 10.05 22.27 0.22 -2.75 16 12 C -0.12 -3.33 10.05 22.27 0.22 -3.11 16 13 C -0.12 -4.28 9.70 22.27 0.22 -4.06 16 14 C 0.09 4.08 4.80 86.30 0.41 4.50 16 15 C 0.00 0.22 1.34 -52.93 -0.07 0.15 16 16 C -0.49 -25.01 5.52 25.60 0.14 -24.87 16 17 H 0.04 2.30 7.69 -2.91 -0.02 2.28 16 18 C 0.04 2.31 3.41 84.65 0.29 2.60 16 19 N -0.89 -48.68 11.13 21.45 0.24 -48.44 16 20 Si 0.92 42.46 29.54 68.60 2.03 44.48 16 21 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 22 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 23 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 24 C -0.20 -8.73 9.93 30.62 0.30 -8.42 16 25 C -0.19 -7.47 8.34 30.62 0.26 -7.22 16 26 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 27 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.06 1.29 8.14 -2.38 -0.02 1.28 16 29 H 0.05 1.84 5.86 -2.39 -0.01 1.82 16 30 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.07 1.90 7.63 -2.39 -0.02 1.89 16 32 H 0.37 10.13 9.03 -74.06 -0.67 9.46 16 33 H 0.07 2.13 5.00 -2.39 -0.01 2.12 16 34 H 0.06 2.04 3.77 -2.39 -0.01 2.03 16 35 H 0.06 3.03 5.59 -2.39 -0.01 3.01 16 36 H 0.04 1.96 5.85 -2.39 -0.01 1.95 16 37 H 0.12 3.36 7.11 -2.91 -0.02 3.34 16 38 H 0.14 2.53 8.06 -2.91 -0.02 2.50 16 39 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 40 H 0.13 2.99 8.06 -2.91 -0.02 2.97 16 41 H 0.10 3.70 8.06 -2.91 -0.02 3.68 16 42 H 0.06 2.46 4.65 -2.39 -0.01 2.45 16 43 H 0.07 3.76 6.07 -2.39 -0.01 3.75 16 44 H 0.26 13.81 8.32 -92.71 -0.77 13.04 16 45 H 0.06 2.79 8.14 -2.39 -0.02 2.77 16 46 H 0.07 3.06 8.14 -2.38 -0.02 3.04 16 47 H 0.09 3.27 6.16 -2.39 -0.01 3.26 16 48 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 Total: -1.00 -57.73 362.41 1.06 -56.67 By element: Atomic # 1 Polarization: 39.79 SS G_CDS: 0.29 Total: 40.08 kcal Atomic # 6 Polarization: -53.53 SS G_CDS: 4.11 Total: -49.42 kcal Atomic # 7 Polarization: -68.71 SS G_CDS: -3.48 Total: -72.19 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -1.88 Total: -19.62 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Total: -57.73 1.06 -56.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602802427.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.949 kcal (2) G-P(sol) polarization free energy of solvation -57.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds