Wall clock time and date at job start Tue Mar 31 2020 11:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42897 * 109.47050 * 2 1 4 4 C 1.35902 * 117.00042 * 179.97438 * 3 2 1 5 5 C 1.38760 * 120.05110 * 0.25588 * 4 3 2 6 6 C 1.38127 * 119.93948 * 180.31845 * 5 4 3 7 7 C 1.38286 * 120.05349 * 359.68163 * 6 5 4 8 8 C 1.38244 * 120.11637 * 0.02562 * 7 6 5 9 9 C 1.38163 * 120.05212 * 0.02562 * 8 7 6 10 10 C 1.50703 * 120.02856 * 179.97438 * 9 8 7 11 11 H 1.08998 * 109.47238 * 145.49970 * 10 9 8 12 12 C 1.53002 * 109.47439 * 265.50713 * 10 9 8 13 13 C 1.53001 * 109.47137 * 184.86489 * 12 10 9 14 14 N 1.46904 * 109.46904 * 25.50879 * 10 9 8 15 15 C 1.46895 * 111.00434 * 138.55765 * 14 10 9 16 16 C 1.52994 * 109.47183 * 266.67619 * 15 14 10 17 17 C 1.50700 * 115.56236 * 269.67657 * 16 15 14 18 18 H 1.08007 * 120.00221 * 140.32804 * 17 16 15 19 19 C 1.37881 * 119.99787 * 320.33492 * 17 16 15 20 20 N 1.31513 * 119.99702 * 166.53708 * 19 17 16 21 21 Si 1.86800 * 119.99961 * 346.53475 * 19 17 16 22 22 H 1.48500 * 109.46812 * 95.51601 * 21 19 17 23 23 H 1.48498 * 109.46997 * 215.51654 * 21 19 17 24 24 H 1.48498 * 109.46986 * 335.51386 * 21 19 17 25 25 C 1.53000 * 117.50139 * 123.98462 * 16 15 14 26 26 C 1.53005 * 60.00328 * 252.51120 * 25 16 15 27 27 H 1.09004 * 109.47237 * 299.99754 * 1 2 3 28 28 H 1.08997 * 109.47287 * 59.99818 * 1 2 3 29 29 H 1.09005 * 109.46894 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46574 * 240.00562 * 2 1 3 31 31 H 1.08996 * 109.46741 * 120.00715 * 2 1 3 32 32 H 1.07994 * 120.02914 * 0.02562 * 5 4 3 33 33 H 1.07995 * 119.97336 * 179.70576 * 6 5 4 34 34 H 1.08001 * 119.94439 * 180.02562 * 7 6 5 35 35 H 1.07998 * 119.97658 * 180.02562 * 8 7 6 36 36 H 1.09000 * 109.46464 * 304.86418 * 12 10 9 37 37 H 1.08991 * 109.47014 * 64.86304 * 12 10 9 38 38 H 1.08999 * 109.47141 * 62.79699 * 13 12 10 39 39 H 1.09000 * 109.46773 * 182.79749 * 13 12 10 40 40 H 1.09003 * 109.47008 * 302.79794 * 13 12 10 41 41 H 1.00900 * 111.00063 * 14.59688 * 14 10 9 42 42 H 1.08996 * 109.47270 * 146.67399 * 15 14 10 43 43 H 1.09007 * 109.47066 * 26.67362 * 15 14 10 44 44 H 0.97008 * 119.99652 * 179.97438 * 20 19 17 45 45 H 1.08998 * 117.49988 * 0.02562 * 25 16 15 46 46 H 1.09000 * 117.49620 * 145.02496 * 25 16 15 47 47 H 1.08996 * 117.49970 * 252.51209 * 26 25 16 48 48 H 1.08993 * 117.51587 * 107.47882 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1999 0.4257 -0.0043 6 6 5.5689 0.6093 0.0029 7 6 6.0962 1.8877 0.0083 8 6 5.2551 2.9849 0.0070 9 6 3.8851 2.8065 0.0009 10 6 2.9688 4.0030 0.0001 11 1 2.0779 3.7780 -0.5863 12 6 2.5630 4.3357 1.4373 13 6 1.5388 5.4723 1.4279 14 7 3.6660 5.1533 -0.5906 15 6 2.7735 5.9110 -1.4779 16 6 2.9352 5.4087 -2.9139 17 6 3.9828 6.1146 -3.7356 18 1 4.6128 5.5505 -4.4076 19 6 4.1372 7.4806 -3.6295 20 7 5.2048 8.0626 -4.1307 21 14 2.8300 8.5047 -2.7739 22 1 3.2178 8.7181 -1.3564 23 1 2.7049 9.8178 -3.4560 24 1 1.5284 7.7921 -2.8292 25 6 1.6781 4.9230 -3.6383 26 6 2.7275 3.9141 -3.1672 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 3.7886 -0.5728 -0.0089 33 1 6.2280 -0.2462 0.0040 34 1 7.1668 2.0293 0.0135 35 1 5.6694 3.9823 0.0108 36 1 2.1233 3.4541 1.9038 37 1 3.4431 4.6443 2.0011 38 1 0.6388 5.1461 0.9067 39 1 1.2869 5.7428 2.4534 40 1 1.9610 6.3376 0.9171 41 1 4.4981 4.8595 -1.0798 42 1 3.0290 6.9696 -1.4323 43 1 1.7405 5.7725 -1.1586 44 1 5.3133 9.0237 -4.0564 45 1 0.7358 4.9617 -3.0919 46 1 1.6089 5.1141 -4.7092 47 1 3.3485 3.4415 -3.9281 48 1 2.4759 3.2887 -2.3107 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602803323.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:49 Heat of formation + Delta-G solvation = -1.399881 kcal Electronic energy + Delta-G solvation = -26331.341915 eV Core-core repulsion = 22965.732205 eV Total energy + Delta-G solvation = -3365.609710 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.42632 -39.71472 -38.41403 -36.76787 -34.33674 -32.99130 -32.64273 -31.88978 -30.46063 -28.58064 -27.07830 -25.48574 -24.51141 -23.13733 -23.03119 -22.50383 -21.23848 -20.91229 -19.23253 -18.38723 -17.40467 -17.16214 -16.99114 -16.87493 -16.04906 -15.66499 -15.39986 -15.27042 -14.92674 -14.64674 -14.45389 -14.29452 -14.12842 -14.00166 -13.70701 -13.40846 -13.36214 -12.98558 -12.82252 -12.75034 -12.52931 -12.45712 -12.32978 -12.12491 -12.06202 -11.80102 -11.61681 -11.59437 -11.49963 -11.26237 -11.17218 -10.60511 -10.39940 -9.75022 -9.20372 -9.02404 -8.33160 -6.29978 0.40821 0.53714 1.32486 1.38311 1.50206 2.31956 2.33322 2.82327 2.84730 3.31114 3.53429 3.72341 3.93577 4.01545 4.08395 4.11053 4.20364 4.23822 4.29201 4.32660 4.38516 4.42972 4.47013 4.48788 4.53258 4.61499 4.69321 4.77302 4.85061 4.91972 4.95170 4.96180 5.02142 5.07523 5.11727 5.15877 5.22606 5.24811 5.33281 5.41778 5.43157 5.49032 5.52299 5.64186 5.68795 5.91623 6.23505 6.32824 6.47460 6.56235 6.72147 7.31191 8.82325 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.014952 B = 0.005140 C = 0.004817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.169270 B = 5445.990881 C = 5811.382708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.046 3.954 3 O -0.328 6.328 4 C 0.123 3.877 5 C -0.211 4.211 6 C -0.085 4.085 7 C -0.161 4.161 8 C -0.089 4.089 9 C -0.134 4.134 10 C 0.138 3.862 11 H 0.053 0.947 12 C -0.094 4.094 13 C -0.148 4.148 14 N -0.675 5.675 15 C 0.093 3.907 16 C -0.038 4.038 17 C -0.488 4.488 18 H 0.028 0.972 19 C 0.029 3.971 20 N -0.936 5.936 21 Si 0.947 3.053 22 H -0.267 1.267 23 H -0.302 1.302 24 H -0.244 1.244 25 C -0.197 4.197 26 C -0.171 4.171 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.149 0.851 33 H 0.151 0.849 34 H 0.139 0.861 35 H 0.126 0.874 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.049 0.951 39 H 0.066 0.934 40 H 0.046 0.954 41 H 0.345 0.655 42 H 0.050 0.950 43 H 0.067 0.933 44 H 0.267 0.733 45 H 0.090 0.910 46 H 0.074 0.926 47 H 0.065 0.935 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.149 -17.427 13.529 23.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 O -0.243 6.243 4 C 0.077 3.923 5 C -0.230 4.230 6 C -0.102 4.102 7 C -0.179 4.179 8 C -0.108 4.108 9 C -0.135 4.135 10 C 0.028 3.972 11 H 0.071 0.929 12 C -0.132 4.132 13 C -0.205 4.205 14 N -0.307 5.307 15 C -0.036 4.036 16 C -0.040 4.040 17 C -0.525 4.525 18 H 0.047 0.953 19 C -0.170 4.170 20 N -0.575 5.575 21 Si 0.774 3.226 22 H -0.193 1.193 23 H -0.231 1.231 24 H -0.168 1.168 25 C -0.236 4.236 26 C -0.208 4.208 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.120 0.880 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.167 0.833 33 H 0.169 0.831 34 H 0.157 0.843 35 H 0.144 0.856 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.065 0.935 41 H 0.166 0.834 42 H 0.068 0.932 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.108 0.892 46 H 0.093 0.907 47 H 0.084 0.916 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.326 -16.719 14.045 23.032 hybrid contribution 0.024 0.112 -1.165 1.171 sum -7.302 -16.607 12.879 22.248 Atomic orbital electron populations 1.21796 0.91821 1.04050 1.02937 1.23031 0.96685 0.80985 1.02139 1.86083 1.18656 1.31023 1.88527 1.18870 0.82931 0.93515 0.96966 1.21467 0.94532 0.98264 1.08716 1.21263 0.94608 0.97710 0.96664 1.21305 1.00636 0.92447 1.03550 1.21023 0.92149 1.00049 0.97531 1.19528 0.94517 0.92566 1.06928 1.20401 0.94131 0.86210 0.96414 0.92900 1.21414 0.98971 0.98305 0.94490 1.21755 0.98295 0.98627 1.01818 1.60936 1.08464 1.24336 1.36943 1.21922 0.95685 0.96988 0.89032 1.20076 0.95622 0.93882 0.94418 1.20433 1.16274 0.92239 1.23593 0.95329 1.25717 0.96497 0.98949 0.95835 1.70068 1.27873 1.11196 1.48326 0.85898 0.81625 0.77091 0.77975 1.19331 1.23080 1.16790 1.23158 0.93820 1.06332 1.00271 1.22722 1.03275 0.92472 1.02344 0.91797 0.92583 0.88043 0.91601 0.90687 0.83309 0.83085 0.84341 0.85571 0.91623 0.92050 0.93226 0.91528 0.93505 0.83443 0.93200 0.91456 0.92398 0.89189 0.90728 0.91650 0.88968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 10.28 71.98 0.74 -1.37 16 2 C 0.05 0.79 5.46 71.98 0.39 1.19 16 3 O -0.33 -8.47 9.27 -92.45 -0.86 -9.32 16 4 C 0.12 3.37 6.66 22.51 0.15 3.52 16 5 C -0.21 -4.74 9.04 22.37 0.20 -4.54 16 6 C -0.08 -1.82 10.04 22.25 0.22 -1.59 16 7 C -0.16 -4.03 10.04 22.28 0.22 -3.81 16 8 C -0.09 -2.69 8.79 22.25 0.20 -2.49 16 9 C -0.13 -4.14 4.66 -19.77 -0.09 -4.23 16 10 C 0.14 4.52 1.14 44.17 0.05 4.58 16 11 H 0.05 1.88 5.34 -2.39 -0.01 1.86 16 12 C -0.09 -2.70 5.59 30.60 0.17 -2.53 16 13 C -0.15 -4.10 8.95 71.98 0.64 -3.46 16 14 N -0.68 -26.09 5.76 -495.45 -2.85 -28.94 16 15 C 0.09 3.96 3.78 86.30 0.33 4.29 16 16 C -0.04 -1.78 1.04 -52.93 -0.05 -1.83 16 17 C -0.49 -28.13 9.54 25.60 0.24 -27.88 16 18 H 0.03 1.85 8.06 -2.91 -0.02 1.82 16 19 C 0.03 1.68 5.41 84.66 0.46 2.14 16 20 N -0.94 -58.42 13.96 21.45 0.30 -58.12 16 21 Si 0.95 45.86 24.39 68.60 1.67 47.54 16 22 H -0.27 -12.47 6.73 99.48 0.67 -11.80 16 23 H -0.30 -14.64 7.11 99.48 0.71 -13.94 16 24 H -0.24 -11.04 6.87 99.48 0.68 -10.35 16 25 C -0.20 -8.37 9.88 30.60 0.30 -8.07 16 26 C -0.17 -7.19 9.53 30.60 0.29 -6.90 16 27 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.07 1.04 7.65 -2.39 -0.02 1.02 16 31 H 0.07 1.03 7.67 -2.39 -0.02 1.01 16 32 H 0.15 2.45 6.30 -2.91 -0.02 2.43 16 33 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 34 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 35 H 0.13 4.02 6.66 -2.91 -0.02 4.00 16 36 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.05 1.49 6.56 -2.39 -0.02 1.47 16 41 H 0.34 14.39 5.94 -89.69 -0.53 13.86 16 42 H 0.05 2.35 2.79 -2.39 -0.01 2.34 16 43 H 0.07 2.64 6.13 -2.38 -0.01 2.63 16 44 H 0.27 15.63 8.31 -92.70 -0.77 14.86 16 45 H 0.09 3.38 8.03 -2.39 -0.02 3.36 16 46 H 0.07 3.26 8.14 -2.39 -0.02 3.24 16 47 H 0.06 2.89 8.14 -2.39 -0.02 2.87 16 48 H 0.09 3.59 5.35 -2.39 -0.01 3.58 16 Total: -1.00 -66.54 368.12 3.09 -63.45 By element: Atomic # 1 Polarization: 38.04 SS G_CDS: 0.36 Total: 38.40 kcal Atomic # 6 Polarization: -57.46 SS G_CDS: 4.47 Total: -52.99 kcal Atomic # 7 Polarization: -84.51 SS G_CDS: -2.56 Total: -87.07 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -0.86 Total: -9.32 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.67 Total: 47.54 kcal Total: -66.54 3.09 -63.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602803323.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.049 kcal (2) G-P(sol) polarization free energy of solvation -66.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds