Wall clock time and date at job start Tue Mar 31 2020 10:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47385 * 2 1 4 4 C 1.53000 * 109.47092 * 239.99804 * 2 1 3 5 5 O 1.42901 * 109.47022 * 182.96222 * 4 2 1 6 6 C 1.53001 * 109.46849 * 119.99870 * 2 1 3 7 7 H 1.09004 * 109.47441 * 66.65674 * 6 2 1 8 8 N 1.46900 * 109.47306 * 186.65478 * 6 2 1 9 9 C 1.46897 * 111.00140 * 201.47105 * 8 6 2 10 10 C 1.53003 * 109.46698 * 184.42965 * 9 8 6 11 11 C 1.50698 * 115.56245 * 268.86103 * 10 9 8 12 12 H 1.08001 * 120.00365 * 140.08086 * 11 10 9 13 13 C 1.37883 * 120.00185 * 320.09079 * 11 10 9 14 14 N 1.31513 * 120.00257 * 168.75004 * 13 11 10 15 15 Si 1.86804 * 119.99650 * 348.74936 * 13 11 10 16 16 H 1.48495 * 109.47264 * 95.88712 * 15 13 11 17 17 H 1.48503 * 109.46722 * 215.88404 * 15 13 11 18 18 H 1.48495 * 109.47082 * 335.88263 * 15 13 11 19 19 C 1.53000 * 117.50150 * 54.55693 * 10 9 8 20 20 C 1.52995 * 60.03347 * 107.47485 * 19 10 9 21 21 C 1.50700 * 109.47279 * 306.65394 * 6 2 1 22 22 C 1.38233 * 120.00061 * 278.23317 * 21 6 2 23 23 C 1.38235 * 119.99852 * 179.78318 * 22 21 6 24 24 C 1.38236 * 119.99960 * 0.45013 * 23 22 21 25 25 C 1.38235 * 120.00161 * 359.80684 * 24 23 22 26 26 C 1.38236 * 119.99854 * 359.97438 * 25 24 23 27 27 H 1.08999 * 109.46905 * 299.99982 * 1 2 3 28 28 H 1.09001 * 109.46933 * 60.00153 * 1 2 3 29 29 H 1.08995 * 109.47442 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47350 * 180.99506 * 3 2 1 31 31 H 1.09000 * 109.47092 * 301.00104 * 3 2 1 32 32 H 1.09008 * 109.47150 * 60.99682 * 3 2 1 33 33 H 1.09001 * 109.47187 * 302.95776 * 4 2 1 34 34 H 1.09000 * 109.47054 * 62.96670 * 4 2 1 35 35 H 0.96695 * 114.00070 * 184.99268 * 5 4 2 36 36 H 1.00904 * 110.99935 * 77.51238 * 8 6 2 37 37 H 1.08998 * 109.47444 * 64.43336 * 9 8 6 38 38 H 1.08999 * 109.47029 * 304.42738 * 9 8 6 39 39 H 0.96992 * 119.99961 * 179.97438 * 14 13 11 40 40 H 1.08999 * 117.49676 * 214.97486 * 19 10 9 41 41 H 1.09003 * 117.49633 * 359.97290 * 19 10 9 42 42 H 1.09005 * 117.50278 * 107.50036 * 20 19 10 43 43 H 1.09002 * 117.50181 * 252.52223 * 20 19 10 44 44 H 1.07996 * 120.00196 * 0.02562 * 22 21 6 45 45 H 1.08002 * 120.00140 * 180.27762 * 23 22 21 46 46 H 1.08005 * 119.99958 * 179.83346 * 24 23 22 47 47 H 1.07995 * 119.99846 * 180.02562 * 25 24 23 48 48 H 1.07994 * 119.99811 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 3.4673 -0.7819 -1.2149 6 6 2.0399 -0.7212 1.2493 7 1 1.7771 -1.7776 1.1918 8 7 3.5002 -0.5839 1.3323 9 6 4.0809 -1.6370 2.1758 10 6 5.5843 -1.3972 2.3281 11 6 6.4579 -2.0740 1.3034 12 1 7.3122 -1.5549 0.8946 13 6 6.1663 -3.3559 0.8875 14 7 6.7839 -3.8651 -0.1559 15 14 4.8941 -4.3692 1.8064 16 1 3.5800 -4.2493 1.1254 17 1 5.3145 -5.7934 1.8240 18 1 4.7768 -3.8705 3.2002 19 6 6.0327 -0.0290 2.8456 20 6 6.1376 -1.2595 3.7487 21 6 1.4077 -0.1122 2.4742 22 6 1.9278 1.0482 3.0161 23 6 1.3451 1.6093 4.1371 24 6 0.2479 1.0047 4.7216 25 6 -0.2690 -0.1586 4.1828 26 6 0.3110 -0.7172 3.0592 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1299 1.4425 -0.0178 31 1 1.6622 1.9615 -0.8809 32 1 1.6914 1.9512 0.8989 33 1 1.6340 -1.7325 -1.2761 34 1 1.7207 -0.1777 -2.1384 35 1 3.8643 -1.1582 -2.0123 36 1 3.7587 0.3319 1.6679 37 1 3.9133 -2.6086 1.7110 38 1 3.6086 -1.6177 3.1579 39 1 6.5790 -4.7670 -0.4482 40 1 6.9594 0.3816 2.4449 41 1 5.2566 0.7005 3.0772 42 1 7.1334 -1.6585 3.9421 43 1 5.4303 -1.3398 4.5742 44 1 2.7870 1.5187 2.5614 45 1 1.7487 2.5184 4.5578 46 1 -0.2057 1.4416 5.5990 47 1 -1.1264 -0.6306 4.6393 48 1 -0.0926 -1.6263 2.6386 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602817540.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:55 Heat of formation + Delta-G solvation = 18.425443 kcal Electronic energy + Delta-G solvation = -26921.298277 eV Core-core repulsion = 23556.548257 eV Total energy + Delta-G solvation = -3364.750019 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.14422 -37.71083 -36.98536 -34.90167 -32.88462 -32.03098 -30.99144 -30.43259 -27.23506 -26.78648 -25.61780 -25.16760 -23.46267 -22.28023 -21.41060 -21.02499 -19.02374 -18.43978 -17.12856 -16.63294 -16.14146 -15.47891 -15.28531 -15.12086 -14.78821 -14.27274 -14.20081 -13.62034 -13.47831 -13.31463 -13.24503 -12.85681 -12.49200 -12.39166 -12.15579 -12.11595 -11.88433 -11.77901 -11.66204 -11.21093 -10.97222 -10.82941 -10.73528 -10.60080 -10.44845 -10.18221 -10.09143 -9.76098 -9.30647 -9.24359 -9.09283 -8.84757 -8.64091 -8.57618 -8.21286 -7.44639 -5.99913 -3.90126 1.41964 1.44550 3.31041 3.43705 3.48619 3.83713 4.49133 4.56595 4.69604 4.79327 4.93375 5.00465 5.02102 5.12815 5.21906 5.38469 5.46464 5.51918 5.56988 5.62413 5.70286 5.73237 5.80412 5.86900 5.89287 5.93271 6.03169 6.04421 6.07300 6.13084 6.23151 6.29255 6.32945 6.36980 6.38890 6.52270 6.54043 6.57303 6.62726 6.67956 6.79147 6.85654 7.05526 7.19196 7.23557 7.86872 7.90268 8.16817 8.45405 8.65395 9.05105 9.66347 11.12727 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.013398 B = 0.006502 C = 0.005517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.395715 B = 4305.082877 C = 5074.041558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.045 4.045 3 C -0.143 4.143 4 C 0.093 3.907 5 O -0.517 6.517 6 C 0.136 3.864 7 H 0.077 0.923 8 N -0.629 5.629 9 C 0.093 3.907 10 C 0.023 3.977 11 C -0.461 4.461 12 H 0.074 0.926 13 C 0.081 3.919 14 N -0.894 5.894 15 Si 0.887 3.113 16 H -0.283 1.283 17 H -0.303 1.303 18 H -0.265 1.265 19 C -0.186 4.186 20 C -0.214 4.214 21 C -0.097 4.097 22 C -0.114 4.114 23 C -0.118 4.118 24 C -0.130 4.130 25 C -0.121 4.121 26 C -0.116 4.116 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.030 0.970 34 H 0.029 0.971 35 H 0.364 0.636 36 H 0.332 0.668 37 H 0.066 0.934 38 H 0.004 0.996 39 H 0.261 0.739 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.084 0.916 43 H 0.063 0.937 44 H 0.123 0.877 45 H 0.119 0.881 46 H 0.116 0.884 47 H 0.117 0.883 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.439 9.191 3.224 18.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.046 4.046 3 C -0.200 4.200 4 C 0.014 3.986 5 O -0.319 6.319 6 C 0.025 3.975 7 H 0.095 0.905 8 N -0.259 5.259 9 C -0.035 4.035 10 C 0.022 3.978 11 C -0.498 4.498 12 H 0.092 0.908 13 C -0.121 4.121 14 N -0.532 5.532 15 Si 0.719 3.281 16 H -0.212 1.212 17 H -0.231 1.231 18 H -0.190 1.190 19 C -0.224 4.224 20 C -0.252 4.252 21 C -0.099 4.099 22 C -0.133 4.133 23 C -0.136 4.136 24 C -0.148 4.148 25 C -0.139 4.139 26 C -0.134 4.134 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.209 0.791 36 H 0.154 0.846 37 H 0.084 0.916 38 H 0.022 0.978 39 H 0.071 0.929 40 H 0.100 0.900 41 H 0.083 0.917 42 H 0.102 0.898 43 H 0.081 0.919 44 H 0.141 0.859 45 H 0.137 0.863 46 H 0.134 0.866 47 H 0.135 0.865 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -15.347 8.959 3.090 18.037 hybrid contribution -1.028 -0.635 0.898 1.506 sum -16.375 8.324 3.988 18.797 Atomic orbital electron populations 1.21882 0.94576 1.01663 1.01933 1.20481 0.93804 0.96231 0.94054 1.21904 1.03196 0.94251 1.00621 1.21924 0.84326 0.97143 0.95182 1.87000 1.16341 1.85710 1.42829 1.20600 0.89082 0.98343 0.89493 0.90498 1.60487 1.04761 1.05814 1.54825 1.21875 0.94319 0.95125 0.92199 1.19316 0.91126 0.95246 0.92124 1.20225 1.11130 0.98542 1.19924 0.90777 1.24866 0.95622 0.97650 0.93928 1.69926 1.43600 1.16172 1.23486 0.86898 0.81362 0.78378 0.81484 1.21158 1.23116 1.18997 1.22636 1.01847 0.91322 1.06549 1.23217 1.02081 1.04164 0.95748 1.20976 0.95695 0.95363 0.97902 1.21037 1.00103 0.95852 0.96290 1.21099 0.96393 0.99988 0.96107 1.21067 0.97225 0.96395 1.00122 1.21091 1.00029 0.96294 0.96515 1.21066 0.96221 0.99924 0.96230 0.91935 0.92695 0.92839 0.90332 0.93565 0.92987 0.95210 0.95249 0.79146 0.84607 0.91602 0.97771 0.92894 0.89982 0.91732 0.89769 0.91884 0.85889 0.86325 0.86558 0.86503 0.86449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 7.84 37.16 0.29 -1.37 16 2 C -0.05 -0.63 0.55 -154.51 -0.08 -0.71 16 3 C -0.14 -1.92 7.22 37.16 0.27 -1.65 16 4 C 0.09 1.38 5.91 37.16 0.22 1.60 16 5 O -0.52 -9.34 11.10 -35.23 -0.39 -9.73 16 6 C 0.14 2.22 1.57 -68.86 -0.11 2.11 16 7 H 0.08 1.38 7.79 -51.93 -0.40 0.98 16 8 N -0.63 -12.06 3.76 -107.95 -0.41 -12.47 16 9 C 0.09 2.07 4.27 -3.82 -0.02 2.06 16 10 C 0.02 0.55 1.40 -155.62 -0.22 0.34 16 11 C -0.46 -13.08 9.55 -34.44 -0.33 -13.41 16 12 H 0.07 2.30 8.06 -52.49 -0.42 1.87 16 13 C 0.08 2.34 5.42 -17.82 -0.10 2.25 16 14 N -0.89 -27.14 13.96 55.43 0.77 -26.37 16 15 Si 0.89 22.59 24.34 -169.99 -4.14 18.45 16 16 H -0.28 -7.08 6.80 56.52 0.38 -6.69 16 17 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 18 H -0.27 -6.59 6.71 56.52 0.38 -6.21 16 19 C -0.19 -3.90 9.37 -26.73 -0.25 -4.15 16 20 C -0.21 -4.70 9.88 -26.69 -0.26 -4.97 16 21 C -0.10 -1.42 3.22 -104.62 -0.34 -1.75 16 22 C -0.11 -1.59 7.24 -39.58 -0.29 -1.87 16 23 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 24 C -0.13 -1.50 10.05 -39.58 -0.40 -1.89 16 25 C -0.12 -1.44 10.05 -39.58 -0.40 -1.83 16 26 C -0.12 -1.54 8.57 -39.58 -0.34 -1.88 16 27 H 0.06 0.73 6.50 -51.93 -0.34 0.39 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.08 1.22 6.68 -51.93 -0.35 0.87 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.66 5.63 -51.92 -0.29 0.37 16 33 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.36 5.70 9.12 45.56 0.42 6.12 16 36 H 0.33 6.07 3.97 -39.29 -0.16 5.91 16 37 H 0.07 1.62 2.70 -51.93 -0.14 1.48 16 38 H 0.00 0.09 7.51 -51.93 -0.39 -0.30 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 41 H 0.06 1.20 7.35 -51.93 -0.38 0.82 16 42 H 0.08 1.87 8.14 -51.93 -0.42 1.45 16 43 H 0.06 1.30 8.03 -51.93 -0.42 0.88 16 44 H 0.12 1.70 5.62 -52.49 -0.29 1.41 16 45 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 46 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 47 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 48 H 0.12 1.44 8.05 -52.49 -0.42 1.02 16 LS Contribution 362.42 15.07 5.46 5.46 Total: -1.00 -31.16 362.42 -8.44 -39.60 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: -6.99 Total: 14.04 kcal Atomic # 6 Polarization: -26.25 SS G_CDS: -2.74 Total: -28.99 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.37 Total: -38.84 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: -0.39 Total: -9.73 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.14 Total: 18.45 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.16 -8.44 -39.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602817540.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.024 kcal (2) G-P(sol) polarization free energy of solvation -31.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds