Wall clock time and date at job start Tue Mar 31 2020 11:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47051 * 2 1 4 4 H 1.08999 * 109.47343 * 306.74875 * 3 2 1 5 5 C 1.50699 * 109.47161 * 186.74518 * 3 2 1 6 6 C 1.38288 * 119.97239 * 296.46614 * 5 3 2 7 7 C 1.38248 * 120.11388 * 179.97438 * 6 5 3 8 8 C 1.38163 * 120.05082 * 0.02562 * 7 6 5 9 9 C 1.38712 * 119.94859 * 0.02562 * 8 7 6 10 10 O 1.35897 * 120.05979 * 180.02562 * 9 8 7 11 11 C 1.42904 * 116.99932 * 0.02562 * 10 9 8 12 12 C 1.38116 * 119.97225 * 116.19201 * 5 3 2 13 13 N 1.46904 * 109.47002 * 66.74669 * 3 2 1 14 14 C 1.46899 * 111.00156 * 280.80136 * 13 3 2 15 15 C 1.46903 * 110.99989 * 156.85278 * 13 3 2 16 16 C 1.53004 * 109.47118 * 195.74365 * 15 13 3 17 17 C 1.50694 * 115.54779 * 274.68901 * 16 15 13 18 18 H 1.08005 * 120.00082 * 144.15812 * 17 16 15 19 19 C 1.37881 * 120.00272 * 324.15686 * 17 16 15 20 20 N 1.31510 * 119.99964 * 171.55872 * 19 17 16 21 21 Si 1.86800 * 119.99637 * 351.55850 * 19 17 16 22 22 H 1.48503 * 109.47325 * 96.02815 * 21 19 17 23 23 H 1.48497 * 109.47044 * 216.02842 * 21 19 17 24 24 H 1.48499 * 109.47257 * 336.02844 * 21 19 17 25 25 C 1.52994 * 117.49729 * 128.97911 * 16 15 13 26 26 C 1.53003 * 60.00215 * 252.51024 * 25 16 15 27 27 H 1.09009 * 109.46749 * 156.75791 * 1 2 3 28 28 H 1.08995 * 109.47375 * 36.76168 * 1 2 3 29 29 H 1.08993 * 109.47398 * 276.75799 * 1 2 3 30 30 H 1.09002 * 109.46741 * 119.99835 * 2 1 3 31 31 H 1.09001 * 109.47454 * 239.99819 * 2 1 3 32 32 H 1.07996 * 119.94566 * 359.97438 * 6 5 3 33 33 H 1.07998 * 119.97515 * 180.02562 * 7 6 5 34 34 H 1.08003 * 120.02706 * 180.02562 * 8 7 6 35 35 H 1.09003 * 109.46675 * 300.00041 * 11 10 9 36 36 H 1.08998 * 109.47446 * 59.99468 * 11 10 9 37 37 H 1.08992 * 109.47392 * 179.97438 * 11 10 9 38 38 H 1.08002 * 120.02701 * 0.02562 * 12 5 3 39 39 H 1.09002 * 109.46840 * 70.05178 * 14 13 3 40 40 H 1.08996 * 109.47790 * 190.05625 * 14 13 3 41 41 H 1.08998 * 109.47473 * 310.06038 * 14 13 3 42 42 H 1.09003 * 109.46926 * 315.74180 * 15 13 3 43 43 H 1.08997 * 109.47047 * 75.74159 * 15 13 3 44 44 H 0.97002 * 119.99875 * 180.02562 * 20 19 17 45 45 H 1.09002 * 117.50541 * 0.02562 * 25 16 15 46 46 H 1.09001 * 117.49719 * 145.02000 * 25 16 15 47 47 H 1.08992 * 117.49712 * 252.51311 * 26 25 16 48 48 H 1.08999 * 117.51556 * 107.48133 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5814 1.9900 -0.8234 5 6 3.5377 1.4458 -0.1669 6 6 4.3419 0.8718 0.8007 7 6 5.7162 0.8728 0.6503 8 6 6.2895 1.4480 -0.4674 9 6 5.4851 2.0253 -1.4389 10 8 6.0466 2.5912 -2.5395 11 6 7.4722 2.5554 -2.6316 12 6 4.1057 2.0170 -1.2888 13 7 1.6877 2.0864 1.2725 14 6 0.2818 2.5125 1.2754 15 6 2.5812 3.2177 1.5552 16 6 2.4548 3.6116 3.0283 17 6 1.3319 4.5627 3.3526 18 1 0.7949 4.4665 4.2848 19 6 0.9898 5.5559 2.4594 20 7 -0.0902 6.2785 2.6615 21 14 2.0606 5.8749 0.9624 22 1 1.5034 5.1506 -0.2082 23 1 2.0890 7.3316 0.6755 24 1 3.4406 5.3960 1.2297 25 6 3.7463 3.7401 3.8384 26 6 2.8094 2.5539 4.0753 27 1 -0.3633 -0.9444 -0.4056 28 1 -0.3634 0.8232 -0.6150 29 1 -0.3634 0.1209 1.0204 30 1 1.8933 -0.5138 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 3.8957 0.4221 1.6753 33 1 6.3421 0.4235 1.4071 34 1 7.3632 1.4481 -0.5847 35 1 7.9046 3.0801 -1.7796 36 1 7.8106 1.5193 -2.6301 37 1 7.7889 3.0393 -3.5555 38 1 3.4770 2.4616 -2.0461 39 1 -0.3637 1.6350 1.3132 40 1 0.0940 3.1396 2.1470 41 1 0.0720 3.0791 0.3682 42 1 3.6107 2.9293 1.3433 43 1 2.3046 4.0648 0.9275 44 1 -0.3311 6.9770 2.0329 45 1 4.6861 3.5444 3.3219 46 1 3.7840 4.5129 4.6062 47 1 2.2308 2.5463 4.9990 48 1 3.1324 1.5773 3.7148 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602833280.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:39 Heat of formation + Delta-G solvation = 44.264464 kcal Electronic energy + Delta-G solvation = -26626.774997 eV Core-core repulsion = 23263.145441 eV Total energy + Delta-G solvation = -3363.629555 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.34828 -38.84576 -37.01603 -35.78588 -32.34476 -32.09395 -31.26701 -30.25102 -27.44590 -26.90079 -26.59075 -25.29369 -22.50799 -22.15686 -21.97066 -21.23342 -19.82969 -18.96802 -17.69722 -16.39943 -16.21819 -15.99237 -15.78588 -15.57880 -15.20959 -14.68356 -14.21628 -13.70754 -13.53465 -13.38809 -13.14556 -12.92864 -12.71607 -12.55033 -12.37321 -12.07293 -11.96408 -11.74373 -11.65912 -11.29271 -11.12111 -11.07827 -10.82881 -10.60872 -10.49080 -10.34829 -10.30618 -9.96601 -9.68728 -9.34596 -9.06550 -8.74886 -8.71537 -8.28786 -8.02924 -7.43747 -6.15257 -4.05796 1.39003 1.56457 3.21638 3.22272 3.38734 3.41718 3.83858 4.35981 4.47599 4.74635 4.82032 4.97817 4.99479 5.02761 5.11859 5.25814 5.30173 5.34677 5.49044 5.50763 5.57299 5.58875 5.78251 5.80185 5.87157 6.00927 6.04655 6.11306 6.14982 6.15613 6.32512 6.36413 6.38108 6.46406 6.50460 6.57781 6.62809 6.69130 6.71956 6.78391 6.84341 6.89478 7.09597 7.23478 7.31627 7.41086 7.72544 7.84440 7.90407 8.53782 8.90563 9.49135 10.96053 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.012635 B = 0.006173 C = 0.005438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.548000 B = 4535.105718 C = 5147.619686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.103 4.103 3 C 0.113 3.887 4 H 0.046 0.954 5 C -0.032 4.032 6 C -0.127 4.127 7 C -0.084 4.084 8 C -0.214 4.214 9 C 0.123 3.877 10 O -0.320 6.320 11 C 0.029 3.971 12 C -0.152 4.152 13 N -0.512 5.512 14 C -0.003 4.003 15 C 0.081 3.919 16 C 0.015 3.985 17 C -0.474 4.474 18 H 0.078 0.922 19 C 0.076 3.924 20 N -0.891 5.891 21 Si 0.896 3.104 22 H -0.289 1.289 23 H -0.304 1.304 24 H -0.266 1.266 25 C -0.211 4.211 26 C -0.168 4.168 27 H 0.045 0.955 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.132 0.868 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.097 0.903 38 H 0.125 0.875 39 H 0.068 0.932 40 H 0.116 0.884 41 H 0.011 0.989 42 H 0.068 0.932 43 H 0.020 0.980 44 H 0.265 0.735 45 H 0.063 0.937 46 H 0.081 0.919 47 H 0.076 0.924 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.448 -12.165 -8.687 18.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.141 4.141 3 C 0.004 3.996 4 H 0.063 0.937 5 C -0.033 4.033 6 C -0.146 4.146 7 C -0.102 4.102 8 C -0.232 4.232 9 C 0.078 3.922 10 O -0.234 6.234 11 C -0.066 4.066 12 C -0.172 4.172 13 N -0.235 5.235 14 C -0.150 4.150 15 C -0.045 4.045 16 C 0.014 3.986 17 C -0.511 4.511 18 H 0.096 0.904 19 C -0.127 4.127 20 N -0.528 5.528 21 Si 0.730 3.270 22 H -0.217 1.217 23 H -0.233 1.233 24 H -0.192 1.192 25 C -0.250 4.250 26 C -0.205 4.205 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.150 0.850 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.115 0.885 38 H 0.143 0.857 39 H 0.086 0.914 40 H 0.134 0.866 41 H 0.029 0.971 42 H 0.086 0.914 43 H 0.037 0.963 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.099 0.901 47 H 0.094 0.906 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.270 -12.255 -8.543 18.129 hybrid contribution 0.809 0.975 -1.496 1.961 sum 11.079 -11.280 -10.039 18.729 Atomic orbital electron populations 1.22053 0.95809 1.00685 1.02509 1.21477 0.95947 0.94805 1.01833 1.20880 0.89583 0.96389 0.92704 0.93654 1.19671 0.95723 0.95069 0.92822 1.20987 0.92904 1.01213 0.99485 1.20927 0.95028 0.97816 0.96439 1.21153 0.99479 1.05846 0.96769 1.18908 0.92489 0.94148 0.86637 1.86058 1.22345 1.75018 1.39977 1.23012 0.78909 1.01713 1.02993 1.20320 0.91849 1.05039 0.99954 1.62099 1.04223 1.29005 1.28190 1.23153 0.87699 1.00754 1.03377 1.22289 0.95604 0.90060 0.96542 1.19225 0.94124 0.97361 0.87924 1.20396 1.13758 1.11449 1.05509 0.90421 1.24984 0.94293 0.95671 0.97722 1.69899 1.23388 1.22133 1.37402 0.86751 0.82365 0.74993 0.82924 1.21725 1.23335 1.19196 1.23132 0.94614 1.01354 1.05866 1.22549 1.04008 0.92718 1.01252 0.93560 0.92906 0.91108 0.90830 0.92330 0.84979 0.85843 0.85852 0.92697 0.92814 0.88478 0.85697 0.91364 0.86607 0.97084 0.91394 0.96263 0.92559 0.91830 0.90067 0.90587 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.35 37.16 0.31 -1.68 16 2 C -0.10 -1.40 5.37 -26.73 -0.14 -1.54 16 3 C 0.11 1.87 2.04 -68.86 -0.14 1.73 16 4 H 0.05 0.80 7.31 -51.93 -0.38 0.42 16 5 C -0.03 -0.52 3.06 -104.65 -0.32 -0.84 16 6 C -0.13 -1.91 7.62 -39.56 -0.30 -2.21 16 7 C -0.08 -1.12 10.04 -39.60 -0.40 -1.52 16 8 C -0.21 -2.82 9.04 -39.43 -0.36 -3.18 16 9 C 0.12 1.85 6.69 -39.21 -0.26 1.58 16 10 O -0.32 -4.47 10.50 -19.42 -0.20 -4.67 16 11 C 0.03 0.27 9.81 101.05 0.99 1.26 16 12 C -0.15 -2.48 9.61 -39.43 -0.38 -2.86 16 13 N -0.51 -9.87 4.31 -236.28 -1.02 -10.88 16 14 C 0.00 -0.06 8.46 60.06 0.51 0.45 16 15 C 0.08 1.79 3.16 -3.82 -0.01 1.78 16 16 C 0.01 0.35 1.24 -155.66 -0.19 0.16 16 17 C -0.47 -12.91 7.46 -34.44 -0.26 -13.17 16 18 H 0.08 2.31 8.06 -52.48 -0.42 1.88 16 19 C 0.08 2.13 4.96 -17.82 -0.09 2.04 16 20 N -0.89 -26.44 13.96 55.43 0.77 -25.66 16 21 Si 0.90 22.99 24.34 -169.99 -4.14 18.85 16 22 H -0.29 -7.32 6.99 56.52 0.39 -6.93 16 23 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 24 H -0.27 -6.73 6.32 56.52 0.36 -6.37 16 25 C -0.21 -4.57 9.88 -26.73 -0.26 -4.83 16 26 C -0.17 -3.47 9.84 -26.73 -0.26 -3.74 16 27 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 28 H 0.05 0.71 7.31 -51.93 -0.38 0.33 16 29 H 0.07 0.96 6.14 -51.93 -0.32 0.64 16 30 H 0.07 1.00 7.84 -51.93 -0.41 0.59 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.13 1.95 7.88 -52.49 -0.41 1.53 16 33 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.12 1.30 6.30 -52.48 -0.33 0.97 16 35 H 0.05 0.47 7.66 -51.93 -0.40 0.08 16 36 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 37 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.13 1.99 7.95 -52.49 -0.42 1.57 16 39 H 0.07 1.19 4.43 -51.93 -0.23 0.96 16 40 H 0.12 2.77 4.91 -51.93 -0.26 2.52 16 41 H 0.01 0.23 7.83 -51.93 -0.41 -0.18 16 42 H 0.07 1.45 4.66 -51.93 -0.24 1.21 16 43 H 0.02 0.48 1.62 -51.93 -0.08 0.40 16 44 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.06 1.29 8.05 -51.93 -0.42 0.87 16 46 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 47 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 48 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 360.98 15.07 5.44 5.44 Total: -1.00 -29.94 360.98 -8.36 -38.30 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -7.65 Total: 5.20 kcal Atomic # 6 Polarization: -25.00 SS G_CDS: -1.57 Total: -26.57 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: -0.25 Total: -36.55 kcal Atomic # 8 Polarization: -4.47 SS G_CDS: -0.20 Total: -4.67 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -4.14 Total: 18.85 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.94 -8.36 -38.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602833280.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.563 kcal (2) G-P(sol) polarization free energy of solvation -29.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds