Wall clock time and date at job start Tue Mar 31 2020 11:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47051 * 2 1 4 4 H 1.08999 * 109.47343 * 306.74875 * 3 2 1 5 5 C 1.50699 * 109.47161 * 186.74518 * 3 2 1 6 6 C 1.38288 * 119.97239 * 296.46614 * 5 3 2 7 7 C 1.38248 * 120.11388 * 179.97438 * 6 5 3 8 8 C 1.38163 * 120.05082 * 0.02562 * 7 6 5 9 9 C 1.38712 * 119.94859 * 0.02562 * 8 7 6 10 10 O 1.35897 * 120.05979 * 180.02562 * 9 8 7 11 11 C 1.42904 * 116.99932 * 0.02562 * 10 9 8 12 12 C 1.38116 * 119.97225 * 116.19201 * 5 3 2 13 13 N 1.46904 * 109.47002 * 66.74669 * 3 2 1 14 14 C 1.46899 * 111.00156 * 280.80136 * 13 3 2 15 15 C 1.46903 * 110.99989 * 156.85278 * 13 3 2 16 16 C 1.53004 * 109.47118 * 195.74365 * 15 13 3 17 17 C 1.50694 * 115.54779 * 274.68901 * 16 15 13 18 18 H 1.08005 * 120.00082 * 144.15812 * 17 16 15 19 19 C 1.37881 * 120.00272 * 324.15686 * 17 16 15 20 20 N 1.31510 * 119.99964 * 171.55872 * 19 17 16 21 21 Si 1.86800 * 119.99637 * 351.55850 * 19 17 16 22 22 H 1.48503 * 109.47325 * 96.02815 * 21 19 17 23 23 H 1.48497 * 109.47044 * 216.02842 * 21 19 17 24 24 H 1.48499 * 109.47257 * 336.02844 * 21 19 17 25 25 C 1.52994 * 117.49729 * 128.97911 * 16 15 13 26 26 C 1.53003 * 60.00215 * 252.51024 * 25 16 15 27 27 H 1.09009 * 109.46749 * 156.75791 * 1 2 3 28 28 H 1.08995 * 109.47375 * 36.76168 * 1 2 3 29 29 H 1.08993 * 109.47398 * 276.75799 * 1 2 3 30 30 H 1.09002 * 109.46741 * 119.99835 * 2 1 3 31 31 H 1.09001 * 109.47454 * 239.99819 * 2 1 3 32 32 H 1.07996 * 119.94566 * 359.97438 * 6 5 3 33 33 H 1.07998 * 119.97515 * 180.02562 * 7 6 5 34 34 H 1.08003 * 120.02706 * 180.02562 * 8 7 6 35 35 H 1.09003 * 109.46675 * 300.00041 * 11 10 9 36 36 H 1.08998 * 109.47446 * 59.99468 * 11 10 9 37 37 H 1.08992 * 109.47392 * 179.97438 * 11 10 9 38 38 H 1.08002 * 120.02701 * 0.02562 * 12 5 3 39 39 H 1.09002 * 109.46840 * 70.05178 * 14 13 3 40 40 H 1.08996 * 109.47790 * 190.05625 * 14 13 3 41 41 H 1.08998 * 109.47473 * 310.06038 * 14 13 3 42 42 H 1.09003 * 109.46926 * 315.74180 * 15 13 3 43 43 H 1.08997 * 109.47047 * 75.74159 * 15 13 3 44 44 H 0.97002 * 119.99875 * 180.02562 * 20 19 17 45 45 H 1.09002 * 117.50541 * 0.02562 * 25 16 15 46 46 H 1.09001 * 117.49719 * 145.02000 * 25 16 15 47 47 H 1.08992 * 117.49712 * 252.51311 * 26 25 16 48 48 H 1.08999 * 117.51556 * 107.48133 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5814 1.9900 -0.8234 5 6 3.5377 1.4458 -0.1669 6 6 4.3419 0.8718 0.8007 7 6 5.7162 0.8728 0.6503 8 6 6.2895 1.4480 -0.4674 9 6 5.4851 2.0253 -1.4389 10 8 6.0466 2.5912 -2.5395 11 6 7.4722 2.5554 -2.6316 12 6 4.1057 2.0170 -1.2888 13 7 1.6877 2.0864 1.2725 14 6 0.2818 2.5125 1.2754 15 6 2.5812 3.2177 1.5552 16 6 2.4548 3.6116 3.0283 17 6 1.3319 4.5627 3.3526 18 1 0.7949 4.4665 4.2848 19 6 0.9898 5.5559 2.4594 20 7 -0.0902 6.2785 2.6615 21 14 2.0606 5.8749 0.9624 22 1 1.5034 5.1506 -0.2082 23 1 2.0890 7.3316 0.6755 24 1 3.4406 5.3960 1.2297 25 6 3.7463 3.7401 3.8384 26 6 2.8094 2.5539 4.0753 27 1 -0.3633 -0.9444 -0.4056 28 1 -0.3634 0.8232 -0.6150 29 1 -0.3634 0.1209 1.0204 30 1 1.8933 -0.5138 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 3.8957 0.4221 1.6753 33 1 6.3421 0.4235 1.4071 34 1 7.3632 1.4481 -0.5847 35 1 7.9046 3.0801 -1.7796 36 1 7.8106 1.5193 -2.6301 37 1 7.7889 3.0393 -3.5555 38 1 3.4770 2.4616 -2.0461 39 1 -0.3637 1.6350 1.3132 40 1 0.0940 3.1396 2.1470 41 1 0.0720 3.0791 0.3682 42 1 3.6107 2.9293 1.3433 43 1 2.3046 4.0648 0.9275 44 1 -0.3311 6.9770 2.0329 45 1 4.6861 3.5444 3.3219 46 1 3.7840 4.5129 4.6062 47 1 2.2308 2.5463 4.9990 48 1 3.1324 1.5773 3.7148 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602833280.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:38 Heat of formation + Delta-G solvation = 26.479100 kcal Electronic energy + Delta-G solvation = -26627.546228 eV Core-core repulsion = 23263.145441 eV Total energy + Delta-G solvation = -3364.400787 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.47940 -40.13354 -38.42610 -37.16857 -34.37299 -33.56200 -32.36239 -31.31483 -28.70687 -28.32013 -27.92709 -27.04716 -23.68773 -23.58318 -23.06932 -22.89079 -21.04396 -20.91080 -18.81827 -18.20417 -17.59316 -17.35207 -17.05284 -16.68384 -16.38195 -16.04072 -15.80708 -15.08254 -14.91057 -14.78870 -14.69331 -14.46219 -14.12889 -13.78282 -13.61558 -13.50025 -13.33934 -13.05198 -12.87617 -12.73822 -12.68131 -12.45884 -12.16639 -12.04574 -12.01470 -11.76179 -11.60470 -11.53775 -11.41908 -11.18776 -10.98999 -10.56139 -10.29268 -9.80834 -9.13990 -9.05908 -8.34894 -6.25094 0.29851 0.47925 1.16083 1.27280 1.34853 2.22980 2.31909 2.71916 2.86521 3.07531 3.60445 3.71318 3.85322 4.02459 4.08453 4.14206 4.18167 4.29676 4.30792 4.37186 4.41988 4.44326 4.51468 4.53954 4.60852 4.63764 4.69463 4.71310 4.76521 4.83317 4.91110 4.98523 5.02713 5.06092 5.12276 5.18317 5.28928 5.33785 5.35044 5.42341 5.50790 5.54703 5.62781 5.66218 5.72095 5.79996 6.16250 6.33783 6.35367 6.43957 6.72958 7.30859 8.80420 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.012635 B = 0.006173 C = 0.005438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.548000 B = 4535.105718 C = 5147.619686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.095 4.095 3 C 0.112 3.888 4 H 0.028 0.972 5 C -0.046 4.046 6 C -0.137 4.137 7 C -0.078 4.078 8 C -0.209 4.209 9 C 0.115 3.885 10 O -0.342 6.342 11 C 0.018 3.982 12 C -0.178 4.178 13 N -0.503 5.503 14 C 0.007 3.993 15 C 0.090 3.910 16 C -0.017 4.017 17 C -0.463 4.463 18 H 0.040 0.960 19 C 0.036 3.964 20 N -0.936 5.936 21 Si 0.948 3.052 22 H -0.293 1.293 23 H -0.312 1.312 24 H -0.257 1.257 25 C -0.201 4.201 26 C -0.143 4.143 27 H 0.070 0.930 28 H 0.041 0.959 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.136 0.864 33 H 0.155 0.845 34 H 0.154 0.846 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.117 0.883 38 H 0.112 0.888 39 H 0.097 0.903 40 H 0.077 0.923 41 H -0.006 1.006 42 H 0.081 0.919 43 H -0.006 1.006 44 H 0.264 0.736 45 H 0.086 0.914 46 H 0.073 0.927 47 H 0.070 0.930 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.458 -14.674 -9.165 21.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.132 4.132 3 C 0.004 3.996 4 H 0.046 0.954 5 C -0.047 4.047 6 C -0.155 4.155 7 C -0.096 4.096 8 C -0.228 4.228 9 C 0.070 3.930 10 O -0.257 6.257 11 C -0.076 4.076 12 C -0.198 4.198 13 N -0.226 5.226 14 C -0.141 4.141 15 C -0.037 4.037 16 C -0.018 4.018 17 C -0.501 4.501 18 H 0.058 0.942 19 C -0.163 4.163 20 N -0.575 5.575 21 Si 0.781 3.219 22 H -0.222 1.222 23 H -0.241 1.241 24 H -0.182 1.182 25 C -0.240 4.240 26 C -0.181 4.181 27 H 0.089 0.911 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.154 0.846 33 H 0.173 0.827 34 H 0.171 0.829 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.135 0.865 38 H 0.130 0.870 39 H 0.115 0.885 40 H 0.096 0.904 41 H 0.012 0.988 42 H 0.099 0.901 43 H 0.011 0.989 44 H 0.073 0.927 45 H 0.104 0.896 46 H 0.092 0.908 47 H 0.089 0.911 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 13.306 -14.785 -9.020 21.840 hybrid contribution -0.078 1.688 -1.343 2.158 sum 13.228 -13.097 -10.363 21.305 Atomic orbital electron populations 1.22017 0.95436 1.01588 1.01888 1.21443 0.96178 0.92737 1.02887 1.20972 0.90649 0.97529 0.90486 0.95404 1.19626 0.95202 0.96289 0.93575 1.21096 0.93743 1.01445 0.99264 1.21302 0.94619 0.96764 0.96909 1.21508 1.00903 1.04467 0.95903 1.19056 0.92283 0.94254 0.87435 1.86035 1.24990 1.74916 1.39733 1.23349 0.76489 1.03294 1.04427 1.20386 0.92888 1.06245 1.00254 1.62134 1.02990 1.27471 1.30033 1.23006 0.89283 1.01177 1.00605 1.22124 0.96765 0.89984 0.94793 1.19208 0.94193 0.98660 0.89753 1.20499 1.14192 1.11741 1.03634 0.94167 1.25469 0.95070 0.95825 0.99898 1.70003 1.25282 1.23471 1.38773 0.85901 0.81547 0.74006 0.80414 1.22205 1.24129 1.18168 1.23125 0.94556 1.01480 1.04803 1.22561 1.02503 0.93335 0.99679 0.91149 0.94030 0.91892 0.90137 0.90782 0.84595 0.82707 0.82863 0.91948 0.91062 0.86511 0.86988 0.88463 0.90396 0.98790 0.90106 0.98866 0.92684 0.89582 0.90846 0.91106 0.88021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 8.35 71.98 0.60 -3.08 16 2 C -0.09 -2.39 5.37 30.59 0.16 -2.22 16 3 C 0.11 3.61 2.04 44.17 0.09 3.70 16 4 H 0.03 1.00 7.31 -2.39 -0.02 0.98 16 5 C -0.05 -1.43 3.06 -19.88 -0.06 -1.49 16 6 C -0.14 -3.66 7.62 22.28 0.17 -3.49 16 7 C -0.08 -1.74 10.04 22.25 0.22 -1.52 16 8 C -0.21 -4.72 9.04 22.37 0.20 -4.52 16 9 C 0.11 3.21 6.69 22.51 0.15 3.36 16 10 O -0.34 -8.92 10.50 -92.39 -0.97 -9.89 16 11 C 0.02 0.28 9.81 113.37 1.11 1.40 16 12 C -0.18 -5.66 9.61 22.37 0.21 -5.44 16 13 N -0.50 -19.01 4.31 -901.46 -3.89 -22.89 16 14 C 0.01 0.28 8.46 127.69 1.08 1.36 16 15 C 0.09 3.87 3.16 86.30 0.27 4.15 16 16 C -0.02 -0.78 1.24 -52.93 -0.07 -0.85 16 17 C -0.46 -25.90 7.46 25.60 0.19 -25.71 16 18 H 0.04 2.50 8.06 -2.91 -0.02 2.47 16 19 C 0.04 2.06 4.96 84.66 0.42 2.48 16 20 N -0.94 -57.85 13.96 21.45 0.30 -57.55 16 21 Si 0.95 48.87 24.34 68.60 1.67 50.54 16 22 H -0.29 -15.10 6.99 99.48 0.70 -14.40 16 23 H -0.31 -16.18 7.11 99.48 0.71 -15.47 16 24 H -0.26 -12.63 6.32 99.48 0.63 -12.00 16 25 C -0.20 -8.23 9.88 30.59 0.30 -7.93 16 26 C -0.14 -5.61 9.84 30.60 0.30 -5.31 16 27 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 28 H 0.04 1.09 7.31 -2.39 -0.02 1.07 16 29 H 0.06 1.61 6.14 -2.39 -0.01 1.59 16 30 H 0.08 1.95 7.84 -2.39 -0.02 1.93 16 31 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.14 3.48 7.88 -2.91 -0.02 3.46 16 33 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 34 H 0.15 2.46 6.30 -2.91 -0.02 2.44 16 35 H 0.06 0.86 7.66 -2.39 -0.02 0.84 16 36 H 0.07 0.84 7.66 -2.39 -0.02 0.82 16 37 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.11 3.68 7.95 -2.91 -0.02 3.65 16 39 H 0.10 3.37 4.43 -2.39 -0.01 3.36 16 40 H 0.08 3.85 4.91 -2.39 -0.01 3.84 16 41 H -0.01 -0.29 7.83 -2.39 -0.02 -0.31 16 42 H 0.08 3.28 4.66 -2.39 -0.01 3.27 16 43 H -0.01 -0.28 1.62 -2.39 0.00 -0.29 16 44 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 45 H 0.09 3.15 8.05 -2.39 -0.02 3.13 16 46 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 47 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 48 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 Total: -1.00 -67.05 360.98 3.33 -63.71 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 0.85 Total: 21.21 kcal Atomic # 6 Polarization: -50.49 SS G_CDS: 5.37 Total: -45.12 kcal Atomic # 7 Polarization: -76.86 SS G_CDS: -3.59 Total: -80.44 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -0.97 Total: -9.89 kcal Atomic # 14 Polarization: 48.87 SS G_CDS: 1.67 Total: 50.54 kcal Total: -67.05 3.33 -63.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602833280.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.191 kcal (2) G-P(sol) polarization free energy of solvation -67.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds