Wall clock time and date at job start Tue Mar 31 2020 07:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.47126 * 2 1 4 4 C 1.53000 * 109.47019 * 240.00005 * 2 1 3 5 5 C 1.50705 * 109.47008 * 60.00057 * 4 2 1 6 6 H 1.07994 * 120.00255 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99568 * 180.02562 * 5 4 2 8 8 N 1.31506 * 120.00411 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99441 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47210 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46717 * 120.00046 * 9 7 5 12 12 H 1.48499 * 109.47160 * 239.99636 * 9 7 5 13 13 C 1.52997 * 109.47352 * 120.00057 * 2 1 3 14 14 N 1.46905 * 109.47196 * 299.99747 * 13 2 1 15 15 C 1.46897 * 110.99724 * 179.97438 * 14 13 2 16 16 H 1.08999 * 109.68507 * 34.48472 * 15 14 13 17 17 C 1.53327 * 109.67852 * 155.00127 * 15 14 13 18 18 C 1.52729 * 108.37624 * 189.62419 * 17 15 14 19 19 C 1.50634 * 110.59637 * 308.90367 * 18 17 15 20 20 C 1.38831 * 117.69958 * 197.48447 * 19 18 17 21 21 C 1.38425 * 120.50652 * 180.28996 * 20 19 18 22 22 O 1.35894 * 120.17551 * 180.02562 * 21 20 19 23 23 C 1.38767 * 119.65032 * 0.08413 * 21 20 19 24 24 C 1.37834 * 119.71190 * 0.18407 * 23 21 20 25 25 C 1.37713 * 122.56390 * 17.70311 * 19 18 17 26 26 C 1.50648 * 122.53883 * 359.37884 * 25 19 18 27 27 H 1.09003 * 109.46880 * 299.99933 * 1 2 3 28 28 H 1.08995 * 109.47655 * 59.99738 * 1 2 3 29 29 H 1.08997 * 109.47371 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47083 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46761 * 300.00009 * 3 2 1 32 32 H 1.08989 * 109.47264 * 60.00161 * 3 2 1 33 33 H 1.09000 * 109.47486 * 179.97438 * 4 2 1 34 34 H 1.08999 * 109.47464 * 299.99858 * 4 2 1 35 35 H 0.97002 * 120.00347 * 180.02562 * 8 7 5 36 36 H 1.09004 * 109.47327 * 179.97438 * 13 2 1 37 37 H 1.08997 * 109.47508 * 60.00158 * 13 2 1 38 38 H 1.00900 * 110.99783 * 56.04651 * 14 13 2 39 39 H 1.09003 * 109.68596 * 69.90283 * 17 15 14 40 40 H 1.09001 * 109.68790 * 309.34795 * 17 15 14 41 41 H 1.09007 * 109.25196 * 188.61262 * 18 17 15 42 42 H 1.08996 * 109.25272 * 69.19760 * 18 17 15 43 43 H 1.07995 * 119.74867 * 0.30692 * 20 19 18 44 44 H 0.96701 * 114.00165 * 270.01838 * 22 21 20 45 45 H 1.08002 * 120.14048 * 179.89983 * 23 21 20 46 46 H 1.07996 * 119.68435 * 179.66947 * 24 23 21 47 47 H 1.09000 * 109.25082 * 257.43578 * 26 25 19 48 48 H 1.09001 * 109.25044 * 138.01174 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5375 -0.0108 -2.4797 6 1 0.9163 0.8670 -2.3806 7 6 1.8702 -0.4822 -3.7320 8 7 2.6262 -1.5514 -3.8527 9 14 1.2469 0.3981 -5.2572 10 1 0.4225 1.5652 -4.8530 11 1 2.4016 0.8645 -6.0661 12 1 0.4217 -0.5355 -6.0651 13 6 2.0400 -0.7212 1.2492 14 7 1.5504 -0.0287 2.4487 15 6 2.0210 -0.6952 3.6702 16 1 3.0192 -1.1010 3.5058 17 6 2.0567 0.3111 4.8265 18 6 2.7707 -0.3397 6.0094 19 6 2.1749 -1.6901 6.3102 20 6 2.4391 -2.2497 7.5530 21 6 1.9258 -3.4907 7.8883 22 8 2.1883 -4.0319 9.1069 23 6 1.1429 -4.1799 6.9731 24 6 0.8868 -3.6243 5.7379 25 6 1.3949 -2.3745 5.4049 26 6 1.0612 -1.8233 4.0431 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1299 -0.7209 -1.2496 34 1 1.6766 -1.7489 -1.2493 35 1 2.8606 -1.8829 -4.7337 36 1 3.1300 -0.7216 1.2490 37 1 1.6767 -1.7489 1.2492 38 1 0.5438 0.0414 2.4402 39 1 1.0393 0.5774 5.1131 40 1 2.5977 1.2057 4.5181 41 1 2.6710 0.3006 6.8859 42 1 3.8275 -0.4583 5.7703 43 1 3.0495 -1.7125 8.2637 44 1 2.9874 -4.5759 9.1319 45 1 0.7397 -5.1494 7.2258 46 1 0.2819 -4.1634 5.0240 47 1 0.0411 -1.4394 4.0509 48 1 1.1390 -2.6204 3.3038 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618197864.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:02 Heat of formation + Delta-G solvation = -49.977306 kcal Electronic energy + Delta-G solvation = -24642.976346 eV Core-core repulsion = 21275.260160 eV Total energy + Delta-G solvation = -3367.716185 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -40.50342 -38.51833 -37.31656 -35.57539 -33.46970 -32.39432 -31.34541 -29.69889 -27.88980 -26.80128 -26.31882 -25.06941 -23.69412 -22.64969 -22.46292 -21.74648 -19.93636 -18.23598 -17.74181 -16.38641 -16.25715 -16.09030 -15.48279 -15.02636 -14.73008 -14.57852 -14.30069 -14.21368 -13.72685 -13.39153 -13.29942 -12.96566 -12.71791 -12.54484 -12.33086 -12.27096 -11.99577 -11.86950 -11.50304 -11.18362 -11.03538 -10.97508 -10.88161 -10.79809 -10.74487 -10.50643 -10.45432 -10.24316 -10.08074 -9.68226 -9.01182 -8.99993 -8.80860 -8.57899 -8.31804 -8.06847 -5.96086 -3.96020 1.00775 1.09994 3.32426 3.33973 3.40387 3.43848 3.93832 4.27686 4.48304 4.50488 4.65827 4.74295 4.84938 4.99287 5.04132 5.05944 5.35272 5.38333 5.39884 5.45650 5.59439 5.65691 5.68925 5.74301 5.77647 5.84490 5.86696 5.98379 6.05546 6.16929 6.18252 6.23989 6.29683 6.34556 6.44760 6.51899 6.62884 6.67152 6.80386 6.83971 7.21861 7.24463 7.27444 7.37318 7.41807 7.68060 7.72162 7.86326 8.04449 8.48974 9.09712 9.66850 11.15620 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.030780 B = 0.002528 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.472040 B =11072.809406 C =11516.909324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.058 4.058 3 C -0.116 4.116 4 C 0.033 3.967 5 C -0.505 4.505 6 H 0.059 0.941 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.070 3.930 14 N -0.679 5.679 15 C 0.088 3.912 16 H 0.079 0.921 17 C -0.107 4.107 18 C -0.081 4.081 19 C -0.058 4.058 20 C -0.147 4.147 21 C 0.097 3.903 22 O -0.501 6.501 23 C -0.148 4.148 24 C -0.104 4.104 25 C -0.074 4.074 26 C -0.111 4.111 27 H 0.033 0.967 28 H 0.064 0.936 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.054 0.946 32 H 0.042 0.958 33 H 0.015 0.985 34 H 0.012 0.988 35 H 0.258 0.742 36 H 0.065 0.935 37 H 0.023 0.977 38 H 0.339 0.661 39 H 0.062 0.938 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.126 0.874 44 H 0.388 0.612 45 H 0.126 0.874 46 H 0.125 0.875 47 H 0.077 0.923 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.778 -2.160 23.194 23.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.058 4.058 3 C -0.174 4.174 4 C -0.005 4.005 5 C -0.544 4.544 6 H 0.078 0.922 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.059 4.059 14 N -0.310 5.310 15 C -0.023 4.023 16 H 0.097 0.903 17 C -0.145 4.145 18 C -0.119 4.119 19 C -0.058 4.058 20 C -0.165 4.165 21 C 0.053 3.947 22 O -0.311 6.311 23 C -0.167 4.167 24 C -0.122 4.122 25 C -0.075 4.075 26 C -0.149 4.149 27 H 0.052 0.948 28 H 0.083 0.917 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.033 0.967 34 H 0.030 0.970 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.041 0.959 38 H 0.158 0.842 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.144 0.856 44 H 0.244 0.756 45 H 0.144 0.856 46 H 0.143 0.857 47 H 0.096 0.904 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.706 -1.495 23.208 23.266 hybrid contribution -0.431 -0.972 -0.995 1.456 sum -1.137 -2.466 22.213 22.378 Atomic orbital electron populations 1.21770 0.96135 1.00318 1.00420 1.20621 0.94672 0.96122 0.94426 1.21600 0.99761 0.95827 1.00170 1.19132 0.96112 0.94969 0.90246 1.21278 1.30637 1.11846 0.90595 0.92240 1.25021 0.95443 0.95125 0.99074 1.69972 1.37390 1.23257 1.23161 0.86614 0.78613 0.79727 0.83518 1.19772 1.21167 1.21213 1.22144 0.99660 0.94745 0.89341 1.60709 1.16456 1.52905 1.00898 1.21556 0.98257 0.91864 0.90585 0.90303 1.21543 1.00949 0.98628 0.93378 1.20519 0.99879 0.92267 0.99188 1.19568 0.97021 0.96478 0.92735 1.21406 1.01959 0.96368 0.96791 1.18351 0.98408 0.93013 0.84970 1.84821 1.48987 1.69129 1.28195 1.21323 1.01057 1.00739 0.93545 1.21109 0.99649 0.95209 0.96231 1.19654 0.97556 0.94319 0.95978 1.21297 1.00628 0.99807 0.93212 0.94805 0.91742 0.94148 0.94199 0.92740 0.93854 0.96701 0.96954 0.93238 0.91624 0.95873 0.84177 0.91895 0.90253 0.90605 0.90342 0.85630 0.75643 0.85605 0.85683 0.90425 0.90617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 7.89 37.15 0.29 -2.05 16 2 C -0.06 -1.13 0.60 -154.51 -0.09 -1.22 16 3 C -0.12 -2.22 8.06 37.16 0.30 -1.92 16 4 C 0.03 0.82 4.04 -27.88 -0.11 0.71 16 5 C -0.51 -13.73 7.65 -34.44 -0.26 -13.99 16 6 H 0.06 1.58 5.68 -52.49 -0.30 1.28 16 7 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 9 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 C 0.07 1.16 4.45 -3.82 -0.02 1.14 16 14 N -0.68 -9.25 5.48 -106.69 -0.58 -9.83 16 15 C 0.09 1.02 2.49 -67.68 -0.17 0.85 16 16 H 0.08 0.99 7.76 -51.93 -0.40 0.59 16 17 C -0.11 -1.08 5.60 -26.70 -0.15 -1.23 16 18 C -0.08 -0.73 5.67 -28.05 -0.16 -0.89 16 19 C -0.06 -0.60 5.74 -104.63 -0.60 -1.20 16 20 C -0.15 -1.45 9.55 -39.29 -0.38 -1.82 16 21 C 0.10 0.97 6.70 -39.32 -0.26 0.71 16 22 O -0.50 -4.39 13.51 -19.41 -0.26 -4.66 16 23 C -0.15 -1.46 9.99 -39.53 -0.40 -1.86 16 24 C -0.10 -1.06 9.60 -39.46 -0.38 -1.44 16 25 C -0.07 -0.81 5.74 -104.57 -0.60 -1.41 16 26 C -0.11 -1.21 4.99 -28.05 -0.14 -1.35 16 27 H 0.03 0.52 6.57 -51.93 -0.34 0.17 16 28 H 0.06 1.28 6.62 -51.93 -0.34 0.94 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 1.12 6.62 -51.93 -0.34 0.77 16 32 H 0.04 0.74 7.60 -51.94 -0.39 0.34 16 33 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.07 1.14 8.06 -51.93 -0.42 0.73 16 37 H 0.02 0.39 7.71 -51.93 -0.40 -0.01 16 38 H 0.34 4.45 6.37 -39.29 -0.25 4.20 16 39 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.08 0.59 8.13 -51.92 -0.42 0.17 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.13 1.05 8.05 -52.49 -0.42 0.63 16 44 H 0.39 1.53 9.06 45.56 0.41 1.94 16 45 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 46 H 0.13 1.11 8.05 -52.49 -0.42 0.69 16 47 H 0.08 0.82 7.94 -51.93 -0.41 0.41 16 48 H 0.08 0.87 7.74 -51.93 -0.40 0.47 16 LS Contribution 372.62 15.07 5.62 5.62 Total: -1.00 -30.65 372.62 -10.11 -40.77 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -7.38 Total: 3.18 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: -3.22 Total: -25.54 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.15 Total: -35.89 kcal Atomic # 8 Polarization: -4.39 SS G_CDS: -0.26 Total: -4.66 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.65 -10.11 -40.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618197864.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.210 kcal (2) G-P(sol) polarization free energy of solvation -30.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds