Wall clock time and date at job start Tue Mar 31 2020 07:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.47126 * 2 1 4 4 C 1.53000 * 109.47019 * 240.00005 * 2 1 3 5 5 C 1.50705 * 109.47008 * 60.00057 * 4 2 1 6 6 H 1.07994 * 120.00255 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99568 * 180.02562 * 5 4 2 8 8 N 1.31506 * 120.00411 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99441 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47210 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46717 * 120.00046 * 9 7 5 12 12 H 1.48499 * 109.47160 * 239.99636 * 9 7 5 13 13 C 1.52997 * 109.47352 * 120.00057 * 2 1 3 14 14 N 1.46905 * 109.47196 * 299.99747 * 13 2 1 15 15 C 1.46897 * 110.99724 * 179.97438 * 14 13 2 16 16 H 1.08999 * 109.68507 * 34.48472 * 15 14 13 17 17 C 1.53327 * 109.67852 * 155.00127 * 15 14 13 18 18 C 1.52729 * 108.37624 * 189.62419 * 17 15 14 19 19 C 1.50634 * 110.59637 * 308.90367 * 18 17 15 20 20 C 1.38831 * 117.69958 * 197.48447 * 19 18 17 21 21 C 1.38425 * 120.50652 * 180.28996 * 20 19 18 22 22 O 1.35894 * 120.17551 * 180.02562 * 21 20 19 23 23 C 1.38767 * 119.65032 * 0.08413 * 21 20 19 24 24 C 1.37834 * 119.71190 * 0.18407 * 23 21 20 25 25 C 1.37713 * 122.56390 * 17.70311 * 19 18 17 26 26 C 1.50648 * 122.53883 * 359.37884 * 25 19 18 27 27 H 1.09003 * 109.46880 * 299.99933 * 1 2 3 28 28 H 1.08995 * 109.47655 * 59.99738 * 1 2 3 29 29 H 1.08997 * 109.47371 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47083 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46761 * 300.00009 * 3 2 1 32 32 H 1.08989 * 109.47264 * 60.00161 * 3 2 1 33 33 H 1.09000 * 109.47486 * 179.97438 * 4 2 1 34 34 H 1.08999 * 109.47464 * 299.99858 * 4 2 1 35 35 H 0.97002 * 120.00347 * 180.02562 * 8 7 5 36 36 H 1.09004 * 109.47327 * 179.97438 * 13 2 1 37 37 H 1.08997 * 109.47508 * 60.00158 * 13 2 1 38 38 H 1.00900 * 110.99783 * 56.04651 * 14 13 2 39 39 H 1.09003 * 109.68596 * 69.90283 * 17 15 14 40 40 H 1.09001 * 109.68790 * 309.34795 * 17 15 14 41 41 H 1.09007 * 109.25196 * 188.61262 * 18 17 15 42 42 H 1.08996 * 109.25272 * 69.19760 * 18 17 15 43 43 H 1.07995 * 119.74867 * 0.30692 * 20 19 18 44 44 H 0.96701 * 114.00165 * 270.01838 * 22 21 20 45 45 H 1.08002 * 120.14048 * 179.89983 * 23 21 20 46 46 H 1.07996 * 119.68435 * 179.66947 * 24 23 21 47 47 H 1.09000 * 109.25082 * 257.43578 * 26 25 19 48 48 H 1.09001 * 109.25044 * 138.01174 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5375 -0.0108 -2.4797 6 1 0.9163 0.8670 -2.3806 7 6 1.8702 -0.4822 -3.7320 8 7 2.6262 -1.5514 -3.8527 9 14 1.2469 0.3981 -5.2572 10 1 0.4225 1.5652 -4.8530 11 1 2.4016 0.8645 -6.0661 12 1 0.4217 -0.5355 -6.0651 13 6 2.0400 -0.7212 1.2492 14 7 1.5504 -0.0287 2.4487 15 6 2.0210 -0.6952 3.6702 16 1 3.0192 -1.1010 3.5058 17 6 2.0567 0.3111 4.8265 18 6 2.7707 -0.3397 6.0094 19 6 2.1749 -1.6901 6.3102 20 6 2.4391 -2.2497 7.5530 21 6 1.9258 -3.4907 7.8883 22 8 2.1883 -4.0319 9.1069 23 6 1.1429 -4.1799 6.9731 24 6 0.8868 -3.6243 5.7379 25 6 1.3949 -2.3745 5.4049 26 6 1.0612 -1.8233 4.0431 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1299 -0.7209 -1.2496 34 1 1.6766 -1.7489 -1.2493 35 1 2.8606 -1.8829 -4.7337 36 1 3.1300 -0.7216 1.2490 37 1 1.6767 -1.7489 1.2492 38 1 0.5438 0.0414 2.4402 39 1 1.0393 0.5774 5.1131 40 1 2.5977 1.2057 4.5181 41 1 2.6710 0.3006 6.8859 42 1 3.8275 -0.4583 5.7703 43 1 3.0495 -1.7125 8.2637 44 1 2.9874 -4.5759 9.1319 45 1 0.7397 -5.1494 7.2258 46 1 0.2819 -4.1634 5.0240 47 1 0.0411 -1.4394 4.0509 48 1 1.1390 -2.6204 3.3038 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618197864.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:01 Heat of formation + Delta-G solvation = -68.112025 kcal Electronic energy + Delta-G solvation = -24643.762726 eV Core-core repulsion = 21275.260160 eV Total energy + Delta-G solvation = -3368.502566 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = -0.83 seconds Orbital eigenvalues (eV) -41.27422 -39.54369 -38.48151 -36.62186 -34.78320 -33.94022 -32.42063 -30.50212 -29.21015 -28.38350 -27.86074 -26.49695 -24.76795 -24.04400 -23.24618 -22.80236 -20.79913 -19.46201 -18.80110 -18.31928 -17.22930 -16.93986 -16.56825 -16.25139 -15.99313 -15.65892 -15.51167 -15.21025 -14.80049 -14.62383 -14.52644 -14.18783 -13.93321 -13.86087 -13.54525 -13.38797 -13.15319 -13.04581 -12.83121 -12.67212 -12.52979 -12.26100 -12.23650 -12.15902 -11.95663 -11.92827 -11.74486 -11.62383 -11.37228 -11.20937 -10.83736 -10.66284 -10.50488 -9.73823 -9.35372 -9.20689 -8.13433 -6.20107 0.26349 0.35789 1.40293 1.41519 1.53558 2.44162 2.61706 3.20653 3.21776 3.30649 3.72045 3.84310 3.95436 4.02742 4.17377 4.19525 4.26997 4.27510 4.32685 4.41872 4.54644 4.63064 4.67843 4.74994 4.83850 4.85341 4.92117 4.96510 5.00051 5.05471 5.11076 5.13279 5.23013 5.24727 5.28945 5.38325 5.42814 5.48092 5.54157 5.56413 5.61307 5.68286 5.69095 5.90034 5.91804 5.94625 6.16117 6.38825 6.59150 6.85082 6.95572 7.47231 8.99120 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.030780 B = 0.002528 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.472040 B =11072.809406 C =11516.909324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.054 4.054 3 C -0.107 4.107 4 C 0.038 3.962 5 C -0.511 4.511 6 H 0.066 0.934 7 C -0.006 4.006 8 N -0.939 5.939 9 Si 0.956 3.044 10 H -0.260 1.260 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.084 3.916 14 N -0.673 5.673 15 C 0.089 3.911 16 H 0.067 0.933 17 C -0.100 4.100 18 C -0.077 4.077 19 C -0.064 4.064 20 C -0.154 4.154 21 C 0.094 3.906 22 O -0.511 6.511 23 C -0.157 4.157 24 C -0.112 4.112 25 C -0.091 4.091 26 C -0.103 4.103 27 H 0.068 0.932 28 H 0.045 0.955 29 H 0.036 0.964 30 H 0.029 0.971 31 H 0.037 0.963 32 H 0.069 0.931 33 H -0.017 1.017 34 H -0.017 1.017 35 H 0.259 0.741 36 H 0.054 0.946 37 H 0.017 0.983 38 H 0.345 0.655 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.140 0.860 44 H 0.409 0.591 45 H 0.139 0.861 46 H 0.133 0.867 47 H 0.083 0.917 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.643 -0.994 24.790 24.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.055 4.055 3 C -0.165 4.165 4 C 0.001 3.999 5 C -0.549 4.549 6 H 0.084 0.916 7 C -0.202 4.202 8 N -0.580 5.580 9 Si 0.781 3.219 10 H -0.184 1.184 11 H -0.209 1.209 12 H -0.209 1.209 13 C -0.046 4.046 14 N -0.304 5.304 15 C -0.021 4.021 16 H 0.086 0.914 17 C -0.138 4.138 18 C -0.115 4.115 19 C -0.064 4.064 20 C -0.172 4.172 21 C 0.050 3.950 22 O -0.324 6.324 23 C -0.175 4.175 24 C -0.130 4.130 25 C -0.092 4.092 26 C -0.142 4.142 27 H 0.087 0.913 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.001 0.999 34 H 0.002 0.998 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.035 0.965 38 H 0.165 0.835 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.111 0.889 42 H 0.101 0.899 43 H 0.158 0.842 44 H 0.268 0.732 45 H 0.156 0.844 46 H 0.151 0.849 47 H 0.101 0.899 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.569 -0.327 24.825 24.877 hybrid contribution -0.122 -1.401 -1.402 1.985 sum -1.691 -1.728 23.424 23.548 Atomic orbital electron populations 1.21686 0.94683 1.00381 1.01219 1.20480 0.95776 0.96062 0.93135 1.21510 0.99098 0.95290 1.00577 1.19025 0.94027 0.94000 0.92851 1.21654 1.30025 1.11807 0.91419 0.91575 1.25926 0.95787 0.95929 1.02600 1.70112 1.38980 1.25003 1.23927 0.85531 0.78113 0.78824 0.79408 1.18416 1.20914 1.20862 1.21818 0.98853 0.94308 0.89579 1.60658 1.16823 1.52552 1.00374 1.21570 0.97733 0.92623 0.90156 0.91438 1.21473 1.01370 0.98018 0.92914 1.20523 0.99814 0.91821 0.99300 1.19745 0.96856 0.97001 0.92844 1.21588 1.02180 0.96513 0.96948 1.18489 0.98159 0.93194 0.85196 1.84763 1.50451 1.69576 1.27577 1.21516 1.01172 1.01391 0.93467 1.21270 0.99809 0.95223 0.96716 1.19717 0.98573 0.94904 0.96005 1.21177 1.00646 0.99132 0.93254 0.91277 0.93563 0.94492 0.95168 0.94404 0.91163 0.99857 0.99825 0.93213 0.92793 0.96462 0.83506 0.91512 0.90282 0.88922 0.89882 0.84192 0.73245 0.84361 0.84928 0.89876 0.91703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.31 7.89 71.98 0.57 -3.74 16 2 C -0.05 -2.11 0.60 -52.18 -0.03 -2.14 16 3 C -0.11 -4.01 8.06 71.98 0.58 -3.43 16 4 C 0.04 1.99 4.04 29.85 0.12 2.11 16 5 C -0.51 -28.21 7.65 25.60 0.20 -28.01 16 6 H 0.07 3.50 5.68 -2.91 -0.02 3.49 16 7 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 8 N -0.94 -57.52 13.29 21.45 0.28 -57.24 16 9 Si 0.96 44.49 29.54 68.60 2.03 46.52 16 10 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 13 C 0.08 2.78 4.45 86.30 0.38 3.16 16 14 N -0.67 -17.28 5.48 -491.47 -2.69 -19.97 16 15 C 0.09 1.96 2.49 44.93 0.11 2.08 16 16 H 0.07 1.66 7.76 -2.39 -0.02 1.64 16 17 C -0.10 -1.80 5.60 30.61 0.17 -1.63 16 18 C -0.08 -1.22 5.67 29.74 0.17 -1.05 16 19 C -0.06 -1.22 5.74 -19.87 -0.11 -1.33 16 20 C -0.15 -2.76 9.55 22.46 0.21 -2.54 16 21 C 0.09 1.73 6.70 22.44 0.15 1.88 16 22 O -0.51 -7.97 13.51 -92.36 -1.25 -9.22 16 23 C -0.16 -2.90 9.99 22.30 0.22 -2.68 16 24 C -0.11 -2.19 9.60 22.35 0.21 -1.98 16 25 C -0.09 -1.88 5.74 -19.83 -0.11 -1.99 16 26 C -0.10 -2.16 4.99 29.74 0.15 -2.01 16 27 H 0.07 1.93 6.57 -2.39 -0.02 1.92 16 28 H 0.05 1.79 6.62 -2.39 -0.02 1.77 16 29 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.04 1.51 6.62 -2.39 -0.02 1.50 16 32 H 0.07 2.23 7.60 -2.39 -0.02 2.21 16 33 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 34 H -0.02 -0.95 8.14 -2.39 -0.02 -0.96 16 35 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 36 H 0.05 1.91 8.06 -2.38 -0.02 1.89 16 37 H 0.02 0.59 7.71 -2.39 -0.02 0.57 16 38 H 0.34 8.21 6.37 -89.69 -0.57 7.64 16 39 H 0.07 1.17 8.10 -2.39 -0.02 1.15 16 40 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.09 1.18 8.13 -2.38 -0.02 1.16 16 42 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.14 2.01 8.05 -2.91 -0.02 1.99 16 44 H 0.41 2.42 9.06 -74.06 -0.67 1.74 16 45 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 46 H 0.13 2.27 8.05 -2.91 -0.02 2.25 16 47 H 0.08 1.62 7.94 -2.39 -0.02 1.60 16 48 H 0.06 1.48 7.74 -2.39 -0.02 1.46 16 Total: -1.00 -66.50 372.62 1.53 -64.97 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -0.29 Total: 18.11 kcal Atomic # 6 Polarization: -46.63 SS G_CDS: 3.45 Total: -43.17 kcal Atomic # 7 Polarization: -74.80 SS G_CDS: -2.41 Total: -77.21 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: -1.25 Total: -9.22 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -66.50 1.53 -64.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618197864.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.144 kcal (2) G-P(sol) polarization free energy of solvation -66.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.83 seconds