Wall clock time and date at job start Tue Mar 31 2020 09:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46806 * 2 1 4 4 C 1.53003 * 109.46806 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.46917 * 55.00374 * 4 3 2 6 6 C 1.53004 * 109.47282 * 295.00278 * 4 3 2 7 7 C 1.53005 * 109.46789 * 175.00302 * 4 3 2 8 8 C 1.50701 * 109.46599 * 185.00081 * 7 4 3 9 9 O 1.21290 * 120.00671 * 359.97438 * 8 7 4 10 10 N 1.34780 * 119.99605 * 180.02562 * 8 7 4 11 11 C 1.46496 * 119.99907 * 355.26013 * 10 8 7 12 12 C 1.50706 * 109.47026 * 90.00716 * 11 10 8 13 13 H 1.07994 * 119.99629 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00019 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99670 * 0.02562 * 14 12 11 16 16 Si 1.86792 * 120.00059 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46729 * 60.00335 * 16 14 12 18 18 H 1.48496 * 109.47422 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47467 * 300.00615 * 16 14 12 20 20 C 1.39926 * 119.99820 * 175.26766 * 10 8 7 21 21 C 1.38872 * 120.06742 * 291.84400 * 20 10 8 22 22 C 1.38115 * 119.92492 * 179.72293 * 21 20 10 23 23 C 1.38286 * 120.07081 * 0.57877 * 22 21 20 24 24 C 1.50701 * 119.92857 * 179.70102 * 23 22 21 25 25 C 1.38274 * 120.14058 * 359.67746 * 23 22 21 26 26 C 1.38112 * 120.07144 * 0.04326 * 25 23 22 27 27 H 1.09000 * 109.47113 * 59.99836 * 1 2 3 28 28 H 1.08998 * 109.46846 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47019 * 299.99558 * 1 2 3 30 30 H 1.09003 * 109.47447 * 240.00597 * 2 1 3 31 31 H 1.09000 * 109.47113 * 120.00163 * 2 1 3 32 32 H 1.09001 * 109.47098 * 60.00335 * 3 2 1 33 33 H 1.09000 * 109.47418 * 299.99976 * 3 2 1 34 34 H 1.09007 * 109.46617 * 299.99892 * 6 4 3 35 35 H 1.09003 * 109.47196 * 59.99732 * 6 4 3 36 36 H 1.09001 * 109.47037 * 180.02562 * 6 4 3 37 37 H 1.09000 * 109.47005 * 304.99749 * 7 4 3 38 38 H 1.08999 * 109.46887 * 65.00393 * 7 4 3 39 39 H 1.09001 * 109.46979 * 210.00544 * 11 10 8 40 40 H 1.08997 * 109.47494 * 330.00175 * 11 10 8 41 41 H 0.96999 * 119.99264 * 179.97438 * 15 14 12 42 42 H 1.07994 * 120.03692 * 359.97438 * 21 20 10 43 43 H 1.08002 * 119.96554 * 180.25807 * 22 21 20 44 44 H 1.08999 * 109.46903 * 269.97474 * 24 23 22 45 45 H 1.09001 * 109.47170 * 29.97674 * 24 23 22 46 46 H 1.08995 * 109.47272 * 149.97697 * 24 23 22 47 47 H 1.08004 * 119.96881 * 180.02562 * 25 23 22 48 48 H 1.08006 * 120.03685 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9336 0.8531 -0.8410 6 6 4.0795 0.8331 1.3083 7 6 4.0800 2.8796 -0.1250 8 6 5.5819 2.8706 -0.2479 9 8 6.1852 1.8184 -0.2357 10 7 6.2550 4.0318 -0.3704 11 6 5.5217 5.2945 -0.4885 12 6 5.2849 5.8683 0.8848 13 1 5.6443 5.3444 1.7581 14 6 4.6094 7.0619 1.0262 15 7 4.1713 7.6995 -0.0374 16 14 4.3153 7.7727 2.7284 17 1 5.6197 8.0176 3.3947 18 1 3.5720 9.0527 2.6088 19 1 3.5200 6.8126 3.5352 20 6 7.6542 4.0313 -0.3848 21 6 8.3617 3.6964 0.7622 22 6 9.7428 3.6913 0.7430 23 6 10.4209 4.0308 -0.4133 24 6 11.9279 4.0306 -0.4287 25 6 9.7193 4.3698 -1.5556 26 6 8.3382 4.3713 -1.5446 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.7158 1.4227 2.1499 35 1 3.7161 -0.1907 1.3979 36 1 5.1695 0.8335 1.3089 37 1 3.6457 3.3431 -1.0109 38 1 3.7913 3.4463 0.7602 39 1 6.1049 5.9993 -1.0811 40 1 4.5642 5.1143 -0.9771 41 1 3.6957 8.5390 0.0622 42 1 7.8327 3.4364 1.6671 43 1 10.2937 3.4269 1.6336 44 1 12.2942 5.0163 -0.1418 45 1 12.2984 3.2860 0.2758 46 1 12.2810 3.7896 -1.4313 47 1 10.2518 4.6341 -2.4573 48 1 7.7908 4.6366 -2.4370 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726940224.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:07 Heat of formation + Delta-G solvation = -44.122985 kcal Electronic energy + Delta-G solvation = -25155.698179 eV Core-core repulsion = 21788.235856 eV Total energy + Delta-G solvation = -3367.462323 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.94643 -38.38437 -36.48852 -35.10730 -32.92699 -32.39565 -31.38169 -30.52858 -27.89413 -27.40277 -26.37074 -25.51774 -23.18556 -22.17806 -22.10247 -20.98778 -19.73568 -18.50576 -16.80330 -16.61148 -15.92720 -15.33285 -15.12431 -15.00093 -14.47809 -14.47105 -13.95022 -13.71623 -13.47554 -13.33534 -13.20269 -13.03117 -12.66164 -12.46244 -12.11112 -12.04745 -11.69748 -11.58259 -11.52578 -11.47227 -11.24249 -11.20163 -11.01349 -10.82417 -10.71765 -10.65066 -10.41682 -10.27332 -10.18319 -10.12658 -9.83569 -9.02495 -8.58683 -8.48738 -8.41585 -7.56267 -6.21212 -4.28425 1.74277 1.85677 3.22584 3.27612 3.28567 3.36584 3.83715 4.18285 4.32245 4.93869 5.05452 5.12320 5.14145 5.16793 5.18618 5.38946 5.39480 5.43818 5.53507 5.59025 5.72842 5.79671 5.82515 5.83499 5.88040 5.91513 5.99105 6.08496 6.08652 6.13672 6.16490 6.23153 6.25174 6.36729 6.42341 6.45021 6.48474 6.65375 6.78976 6.82009 6.88050 6.95190 6.99146 7.15819 7.27674 7.66881 7.76616 8.00574 8.23289 8.74923 8.99750 9.39002 10.85704 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.009019 B = 0.005205 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3103.960410 B = 5377.659097 C = 7666.143943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.116 4.116 4 C -0.074 4.074 5 H 0.071 0.929 6 C -0.151 4.151 7 C -0.129 4.129 8 C 0.522 3.478 9 O -0.558 6.558 10 N -0.564 5.564 11 C 0.240 3.760 12 C -0.536 4.536 13 H 0.060 0.940 14 C 0.067 3.933 15 N -0.891 5.891 16 Si 0.896 3.104 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.275 1.275 20 C 0.174 3.826 21 C -0.103 4.103 22 C -0.113 4.113 23 C -0.107 4.107 24 C -0.107 4.107 25 C -0.113 4.113 26 C -0.122 4.122 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.046 0.954 35 H 0.047 0.953 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.105 0.895 39 H 0.037 0.963 40 H 0.043 0.957 41 H 0.266 0.734 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.065 0.935 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.119 0.881 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.560 -9.179 -1.173 9.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.153 4.153 4 C -0.093 4.093 5 H 0.090 0.910 6 C -0.208 4.208 7 C -0.169 4.169 8 C 0.312 3.688 9 O -0.438 6.438 10 N -0.292 5.292 11 C 0.121 3.879 12 C -0.575 4.575 13 H 0.079 0.921 14 C -0.136 4.136 15 N -0.529 5.529 16 Si 0.724 3.276 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.200 1.200 20 C 0.083 3.917 21 C -0.123 4.123 22 C -0.132 4.132 23 C -0.107 4.107 24 C -0.164 4.164 25 C -0.132 4.132 26 C -0.142 4.142 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.123 0.877 39 H 0.055 0.945 40 H 0.061 0.939 41 H 0.076 0.924 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.136 0.864 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.717 -9.532 -1.237 9.988 hybrid contribution -0.349 0.851 0.942 1.316 sum 2.368 -8.680 -0.295 9.003 Atomic orbital electron populations 1.21783 0.96323 1.01084 1.01759 1.21569 0.95288 0.97383 1.01966 1.21678 0.95126 0.96359 1.02181 1.20895 0.94088 0.95078 0.99237 0.91046 1.21970 1.03052 0.99455 0.96339 1.21706 0.91812 0.98123 1.05235 1.20701 0.90371 0.82641 0.75052 1.90586 1.70851 1.30952 1.51406 1.46022 1.03182 1.09376 1.70605 1.19546 0.91821 0.78604 0.97885 1.21385 1.37003 1.06594 0.92499 0.92133 1.24911 0.95171 0.96439 0.97109 1.69910 1.37645 1.16692 1.28661 0.86577 0.78531 0.78417 0.84122 1.20101 1.21086 1.20021 1.17569 0.83787 0.97689 0.92696 1.21198 0.93895 0.99756 0.97447 1.20801 0.93673 1.01195 0.97495 1.19782 0.95645 1.01259 0.94000 1.20708 0.91673 1.01879 1.02134 1.20759 0.93437 1.01229 0.97750 1.21189 0.94244 1.01396 0.97335 0.92869 0.93208 0.92831 0.92281 0.91869 0.91838 0.92018 0.93459 0.93400 0.90828 0.89251 0.87702 0.94479 0.93921 0.92414 0.86365 0.86431 0.91607 0.91986 0.91984 0.86350 0.86142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.91 37.16 0.37 -1.15 16 2 C -0.12 -1.42 5.69 -26.73 -0.15 -1.57 16 3 C -0.12 -1.52 4.68 -26.73 -0.13 -1.64 16 4 C -0.07 -1.14 2.04 -90.61 -0.18 -1.33 16 5 H 0.07 1.15 7.96 -51.93 -0.41 0.74 16 6 C -0.15 -2.33 8.69 37.16 0.32 -2.01 16 7 C -0.13 -2.32 3.84 -27.88 -0.11 -2.43 16 8 C 0.52 10.82 7.25 -10.98 -0.08 10.74 16 9 O -0.56 -12.35 13.73 5.55 0.08 -12.27 16 10 N -0.56 -12.21 2.50 -114.74 -0.29 -12.50 16 11 C 0.24 5.70 4.88 -5.19 -0.03 5.68 16 12 C -0.54 -13.83 9.16 -34.44 -0.32 -14.15 16 13 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 14 C 0.07 1.75 5.46 -17.82 -0.10 1.66 16 15 N -0.89 -24.32 13.29 55.43 0.74 -23.58 16 16 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 20 C 0.17 3.60 4.74 -83.69 -0.40 3.20 16 21 C -0.10 -2.01 9.56 -39.39 -0.38 -2.39 16 22 C -0.11 -1.86 9.69 -39.61 -0.38 -2.24 16 23 C -0.11 -1.62 5.88 -104.59 -0.62 -2.23 16 24 C -0.11 -1.20 10.01 36.01 0.36 -0.84 16 25 C -0.11 -1.79 9.69 -39.61 -0.38 -2.18 16 26 C -0.12 -2.26 9.69 -39.39 -0.38 -2.64 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.71 6.56 -51.93 -0.34 0.37 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.65 6.56 -51.93 -0.34 0.30 16 36 H 0.07 1.32 5.95 -51.93 -0.31 1.01 16 37 H 0.09 1.55 7.26 -51.93 -0.38 1.18 16 38 H 0.10 2.00 7.91 -51.93 -0.41 1.59 16 39 H 0.04 0.94 7.86 -51.93 -0.41 0.53 16 40 H 0.04 1.02 6.47 -51.93 -0.34 0.69 16 41 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 42 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 43 H 0.12 1.62 8.06 -52.49 -0.42 1.19 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 46 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 47 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 48 H 0.12 2.12 8.06 -52.48 -0.42 1.70 16 LS Contribution 387.43 15.07 5.84 5.84 Total: -1.00 -28.44 387.43 -9.62 -38.06 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -8.39 Total: 4.52 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -2.57 Total: -15.53 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 0.45 Total: -36.08 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.08 Total: -12.27 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -28.44 -9.62 -38.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726940224.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.061 kcal (2) G-P(sol) polarization free energy of solvation -28.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds