Wall clock time and date at job start Tue Mar 31 2020 09:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46806 * 2 1 4 4 C 1.53003 * 109.46806 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.46917 * 55.00374 * 4 3 2 6 6 C 1.53004 * 109.47282 * 295.00278 * 4 3 2 7 7 C 1.53005 * 109.46789 * 175.00302 * 4 3 2 8 8 C 1.50701 * 109.46599 * 185.00081 * 7 4 3 9 9 O 1.21290 * 120.00671 * 359.97438 * 8 7 4 10 10 N 1.34780 * 119.99605 * 180.02562 * 8 7 4 11 11 C 1.46496 * 119.99907 * 355.26013 * 10 8 7 12 12 C 1.50706 * 109.47026 * 90.00716 * 11 10 8 13 13 H 1.07994 * 119.99629 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00019 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99670 * 0.02562 * 14 12 11 16 16 Si 1.86792 * 120.00059 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46729 * 60.00335 * 16 14 12 18 18 H 1.48496 * 109.47422 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47467 * 300.00615 * 16 14 12 20 20 C 1.39926 * 119.99820 * 175.26766 * 10 8 7 21 21 C 1.38872 * 120.06742 * 291.84400 * 20 10 8 22 22 C 1.38115 * 119.92492 * 179.72293 * 21 20 10 23 23 C 1.38286 * 120.07081 * 0.57877 * 22 21 20 24 24 C 1.50701 * 119.92857 * 179.70102 * 23 22 21 25 25 C 1.38274 * 120.14058 * 359.67746 * 23 22 21 26 26 C 1.38112 * 120.07144 * 0.04326 * 25 23 22 27 27 H 1.09000 * 109.47113 * 59.99836 * 1 2 3 28 28 H 1.08998 * 109.46846 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47019 * 299.99558 * 1 2 3 30 30 H 1.09003 * 109.47447 * 240.00597 * 2 1 3 31 31 H 1.09000 * 109.47113 * 120.00163 * 2 1 3 32 32 H 1.09001 * 109.47098 * 60.00335 * 3 2 1 33 33 H 1.09000 * 109.47418 * 299.99976 * 3 2 1 34 34 H 1.09007 * 109.46617 * 299.99892 * 6 4 3 35 35 H 1.09003 * 109.47196 * 59.99732 * 6 4 3 36 36 H 1.09001 * 109.47037 * 180.02562 * 6 4 3 37 37 H 1.09000 * 109.47005 * 304.99749 * 7 4 3 38 38 H 1.08999 * 109.46887 * 65.00393 * 7 4 3 39 39 H 1.09001 * 109.46979 * 210.00544 * 11 10 8 40 40 H 1.08997 * 109.47494 * 330.00175 * 11 10 8 41 41 H 0.96999 * 119.99264 * 179.97438 * 15 14 12 42 42 H 1.07994 * 120.03692 * 359.97438 * 21 20 10 43 43 H 1.08002 * 119.96554 * 180.25807 * 22 21 20 44 44 H 1.08999 * 109.46903 * 269.97474 * 24 23 22 45 45 H 1.09001 * 109.47170 * 29.97674 * 24 23 22 46 46 H 1.08995 * 109.47272 * 149.97697 * 24 23 22 47 47 H 1.08004 * 119.96881 * 180.02562 * 25 23 22 48 48 H 1.08006 * 120.03685 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9336 0.8531 -0.8410 6 6 4.0795 0.8331 1.3083 7 6 4.0800 2.8796 -0.1250 8 6 5.5819 2.8706 -0.2479 9 8 6.1852 1.8184 -0.2357 10 7 6.2550 4.0318 -0.3704 11 6 5.5217 5.2945 -0.4885 12 6 5.2849 5.8683 0.8848 13 1 5.6443 5.3444 1.7581 14 6 4.6094 7.0619 1.0262 15 7 4.1713 7.6995 -0.0374 16 14 4.3153 7.7727 2.7284 17 1 5.6197 8.0176 3.3947 18 1 3.5720 9.0527 2.6088 19 1 3.5200 6.8126 3.5352 20 6 7.6542 4.0313 -0.3848 21 6 8.3617 3.6964 0.7622 22 6 9.7428 3.6913 0.7430 23 6 10.4209 4.0308 -0.4133 24 6 11.9279 4.0306 -0.4287 25 6 9.7193 4.3698 -1.5556 26 6 8.3382 4.3713 -1.5446 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.7158 1.4227 2.1499 35 1 3.7161 -0.1907 1.3979 36 1 5.1695 0.8335 1.3089 37 1 3.6457 3.3431 -1.0109 38 1 3.7913 3.4463 0.7602 39 1 6.1049 5.9993 -1.0811 40 1 4.5642 5.1143 -0.9771 41 1 3.6957 8.5390 0.0622 42 1 7.8327 3.4364 1.6671 43 1 10.2937 3.4269 1.6336 44 1 12.2942 5.0163 -0.1418 45 1 12.2984 3.2860 0.2758 46 1 12.2810 3.7896 -1.4313 47 1 10.2518 4.6341 -2.4573 48 1 7.7908 4.6366 -2.4370 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726940224.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:06 Heat of formation + Delta-G solvation = -55.576511 kcal Electronic energy + Delta-G solvation = -25156.194841 eV Core-core repulsion = 21788.235856 eV Total energy + Delta-G solvation = -3367.958985 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = -1.14 seconds Orbital eigenvalues (eV) -41.51298 -39.77843 -37.72330 -36.77051 -34.74805 -33.62636 -32.70706 -31.88991 -29.33728 -29.16791 -27.47122 -26.79603 -25.04333 -23.54737 -23.34689 -22.17551 -20.97741 -20.04532 -18.72180 -18.26047 -17.61440 -16.73881 -16.48414 -16.39188 -16.16652 -15.71736 -15.36099 -14.89998 -14.71812 -14.47273 -14.38139 -14.34612 -14.27466 -14.04762 -13.54905 -13.18554 -13.15233 -12.98614 -12.83110 -12.79004 -12.67640 -12.58186 -12.45680 -12.29201 -12.10720 -12.01569 -11.80177 -11.74905 -11.60971 -11.45946 -11.25387 -10.71945 -10.54294 -9.99073 -9.86608 -9.11059 -8.23200 -6.38000 0.36084 0.47831 1.40011 1.40552 1.48399 1.69950 2.22049 2.40625 2.81238 3.06933 3.71631 3.86772 3.94107 3.98450 4.05052 4.08156 4.23133 4.30493 4.44821 4.48077 4.51617 4.56708 4.58073 4.73845 4.81082 4.83035 4.83772 4.90768 4.91722 4.96784 4.99152 5.07522 5.09020 5.15196 5.19968 5.20378 5.23726 5.32646 5.39964 5.44762 5.55870 5.56679 5.58840 5.66983 5.67861 5.83072 6.00735 6.18017 6.49372 6.73936 7.27161 7.37958 8.82312 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.009019 B = 0.005205 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3103.960410 B = 5377.659097 C = 7666.143943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.111 4.111 4 C -0.067 4.067 5 H 0.064 0.936 6 C -0.145 4.145 7 C -0.123 4.123 8 C 0.516 3.484 9 O -0.574 6.574 10 N -0.566 5.566 11 C 0.257 3.743 12 C -0.544 4.544 13 H 0.050 0.950 14 C 0.025 3.975 15 N -0.918 5.918 16 Si 0.954 3.046 17 H -0.276 1.276 18 H -0.278 1.278 19 H -0.268 1.268 20 C 0.131 3.869 21 C -0.127 4.127 22 C -0.115 4.115 23 C -0.099 4.099 24 C -0.105 4.105 25 C -0.111 4.111 26 C -0.139 4.139 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.069 0.931 36 H 0.045 0.955 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.016 0.984 40 H 0.037 0.963 41 H 0.269 0.731 42 H 0.101 0.899 43 H 0.145 0.855 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.080 0.920 47 H 0.152 0.848 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.485 -9.628 -0.781 10.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.148 4.148 4 C -0.086 4.086 5 H 0.083 0.917 6 C -0.203 4.203 7 C -0.163 4.163 8 C 0.307 3.693 9 O -0.455 6.455 10 N -0.294 5.294 11 C 0.138 3.862 12 C -0.582 4.582 13 H 0.068 0.932 14 C -0.176 4.176 15 N -0.557 5.557 16 Si 0.779 3.221 17 H -0.201 1.201 18 H -0.203 1.203 19 H -0.193 1.193 20 C 0.041 3.959 21 C -0.146 4.146 22 C -0.133 4.133 23 C -0.100 4.100 24 C -0.161 4.161 25 C -0.129 4.129 26 C -0.159 4.159 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.034 0.966 40 H 0.055 0.945 41 H 0.078 0.922 42 H 0.120 0.880 43 H 0.163 0.837 44 H 0.098 0.902 45 H 0.095 0.905 46 H 0.099 0.901 47 H 0.170 0.830 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.652 -9.991 -0.845 10.671 hybrid contribution -0.508 0.977 0.783 1.351 sum 3.145 -9.014 -0.062 9.547 Atomic orbital electron populations 1.21764 0.95071 1.02031 1.01892 1.21547 0.96363 0.95833 1.02205 1.21639 0.93001 0.97923 1.02275 1.20864 0.95817 0.92980 0.98960 0.91717 1.21898 1.01142 1.00871 0.96341 1.21718 0.90025 0.99934 1.04611 1.21169 0.91387 0.82202 0.74541 1.90558 1.71483 1.31257 1.52224 1.45961 1.04004 1.08727 1.70677 1.19161 0.91289 0.79164 0.96634 1.21521 1.36958 1.06878 0.92875 0.93213 1.25608 0.94857 0.96661 1.00432 1.69998 1.38219 1.17085 1.30412 0.85660 0.78371 0.77961 0.80067 1.20115 1.20341 1.19272 1.17943 0.83384 1.00391 0.94205 1.21250 0.95482 1.01290 0.96619 1.21158 0.92481 1.00380 0.99276 1.20313 0.98095 0.98693 0.92866 1.20793 0.88149 1.03242 1.03907 1.21183 0.92352 0.99900 0.99447 1.21362 0.95768 1.02035 0.96712 0.92716 0.91880 0.92760 0.92064 0.91621 0.91926 0.91766 0.93361 0.91172 0.93629 0.88964 0.88995 0.96621 0.94500 0.92185 0.88035 0.83683 0.90192 0.90476 0.90127 0.82987 0.86301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.91 71.98 0.71 -2.01 16 2 C -0.12 -2.59 5.69 30.60 0.17 -2.42 16 3 C -0.11 -2.83 4.68 30.60 0.14 -2.69 16 4 C -0.07 -2.10 2.04 -10.79 -0.02 -2.12 16 5 H 0.06 2.11 7.96 -2.39 -0.02 2.10 16 6 C -0.15 -4.53 8.69 71.98 0.63 -3.90 16 7 C -0.12 -4.61 3.84 29.85 0.11 -4.50 16 8 C 0.52 22.46 7.25 87.66 0.64 23.09 16 9 O -0.57 -26.51 13.73 -3.06 -0.04 -26.56 16 10 N -0.57 -25.82 2.50 -635.30 -1.59 -27.41 16 11 C 0.26 12.82 4.88 85.64 0.42 13.24 16 12 C -0.54 -28.96 9.16 25.60 0.23 -28.73 16 13 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 14 C 0.03 1.33 5.46 84.65 0.46 1.79 16 15 N -0.92 -50.85 13.29 21.45 0.28 -50.56 16 16 Si 0.95 42.16 29.54 68.60 2.03 44.19 16 17 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 18 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 19 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 20 C 0.13 5.66 4.74 38.15 0.18 5.84 16 21 C -0.13 -5.09 9.56 22.39 0.21 -4.88 16 22 C -0.11 -3.66 9.69 22.25 0.22 -3.44 16 23 C -0.10 -2.79 5.88 -19.84 -0.12 -2.91 16 24 C -0.10 -1.93 10.01 71.24 0.71 -1.22 16 25 C -0.11 -3.33 9.69 22.25 0.22 -3.12 16 26 C -0.14 -5.26 9.69 22.39 0.22 -5.04 16 27 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 1.36 6.56 -2.39 -0.02 1.35 16 32 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 35 H 0.07 1.84 6.56 -2.39 -0.02 1.82 16 36 H 0.04 1.68 5.95 -2.39 -0.01 1.66 16 37 H 0.09 3.35 7.26 -2.39 -0.02 3.33 16 38 H 0.09 3.67 7.91 -2.39 -0.02 3.66 16 39 H 0.02 0.84 7.86 -2.39 -0.02 0.82 16 40 H 0.04 1.86 6.47 -2.39 -0.02 1.84 16 41 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 42 H 0.10 4.26 8.06 -2.91 -0.02 4.24 16 43 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 44 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.08 1.23 8.08 -2.39 -0.02 1.21 16 46 H 0.08 1.23 8.08 -2.39 -0.02 1.21 16 47 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 48 H 0.12 4.36 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -62.68 387.43 6.72 -55.96 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: 0.90 Total: 27.40 kcal Atomic # 6 Polarization: -28.16 SS G_CDS: 5.14 Total: -23.02 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -1.31 Total: -77.98 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.04 Total: -26.56 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -62.68 6.72 -55.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726940224.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.384 kcal (2) G-P(sol) polarization free energy of solvation -62.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -1.14 seconds