Wall clock time and date at job start Tue Mar 31 2020 09:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47066 * 2 1 4 4 C 1.53004 * 109.47388 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47132 * 305.00891 * 4 3 2 6 6 C 1.53005 * 109.46410 * 65.00442 * 4 3 2 7 7 C 1.53001 * 109.47085 * 185.00170 * 4 3 2 8 8 C 1.50697 * 109.46646 * 175.00383 * 7 4 3 9 9 O 1.21291 * 120.00442 * 359.97438 * 8 7 4 10 10 N 1.34779 * 120.00017 * 180.02562 * 8 7 4 11 11 C 1.46502 * 119.99938 * 4.73184 * 10 8 7 12 12 C 1.50700 * 109.47139 * 270.00351 * 11 10 8 13 13 H 1.08000 * 119.99916 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00272 * 179.97438 * 12 11 10 15 15 N 1.31521 * 119.99639 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00223 * 179.97438 * 14 12 11 17 17 H 1.48489 * 109.47149 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46913 * 120.00544 * 16 14 12 19 19 H 1.48508 * 109.46889 * 239.99924 * 16 14 12 20 20 C 1.39932 * 120.00300 * 184.73263 * 10 8 7 21 21 C 1.38869 * 120.06903 * 247.87831 * 20 10 8 22 22 C 1.38106 * 119.92510 * 179.72527 * 21 20 10 23 23 C 1.38283 * 120.07354 * 0.22717 * 22 21 20 24 24 C 1.50706 * 119.92878 * 180.02562 * 23 22 21 25 25 C 1.38279 * 120.14292 * 0.04798 * 23 22 21 26 26 C 1.38118 * 120.06867 * 359.95489 * 25 23 22 27 27 H 1.09005 * 109.46588 * 299.99292 * 1 2 3 28 28 H 1.08999 * 109.47603 * 59.99410 * 1 2 3 29 29 H 1.09001 * 109.46859 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46918 * 240.01120 * 2 1 3 31 31 H 1.08999 * 109.47603 * 120.00590 * 2 1 3 32 32 H 1.09002 * 109.47007 * 60.00111 * 3 2 1 33 33 H 1.08999 * 109.47391 * 300.00720 * 3 2 1 34 34 H 1.09004 * 109.46655 * 180.02562 * 6 4 3 35 35 H 1.09002 * 109.47101 * 299.99860 * 6 4 3 36 36 H 1.08992 * 109.47637 * 60.00153 * 6 4 3 37 37 H 1.08991 * 109.47346 * 55.00481 * 7 4 3 38 38 H 1.08999 * 109.47313 * 295.00277 * 7 4 3 39 39 H 1.09001 * 109.47108 * 30.00068 * 11 10 8 40 40 H 1.08994 * 109.47001 * 150.00263 * 11 10 8 41 41 H 0.96997 * 119.99850 * 179.97438 * 15 14 12 42 42 H 1.07995 * 120.03600 * 359.97438 * 21 20 10 43 43 H 1.08003 * 119.96186 * 180.25373 * 22 21 20 44 44 H 1.08995 * 109.46855 * 90.00313 * 24 23 22 45 45 H 1.09005 * 109.46361 * 210.00016 * 24 23 22 46 46 H 1.08998 * 109.47145 * 329.99652 * 24 23 22 47 47 H 1.07994 * 119.97048 * 179.97438 * 25 23 22 48 48 H 1.07997 * 120.03656 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9330 0.8532 0.8426 6 6 4.0804 0.8328 -1.3065 7 6 4.0799 2.8797 0.1264 8 6 5.5817 2.8706 0.2505 9 8 6.1849 1.8184 0.2398 10 7 6.2547 4.0318 0.3743 11 6 5.5212 5.2945 0.4925 12 6 5.2854 5.8690 -0.8806 13 1 5.6462 5.3461 -1.7539 14 6 4.6091 7.0621 -1.0219 15 7 4.1693 7.6986 0.0417 16 14 4.3174 7.7746 -2.7239 17 1 4.9063 6.8724 -3.7457 18 1 2.8575 7.9054 -2.9621 19 1 4.9559 9.1121 -2.8167 20 6 7.6539 4.0314 0.3898 21 6 8.3369 4.3706 1.5504 22 6 9.7179 4.3638 1.5640 23 6 10.4205 4.0242 0.4224 24 6 11.9274 4.0172 0.4411 25 6 9.7434 3.6915 -0.7365 26 6 8.3623 3.6965 -0.7567 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 5.1705 0.8325 -1.3059 35 1 3.7171 -0.1909 -1.3961 36 1 3.7175 1.4221 -2.1485 37 1 3.6450 3.3433 1.0117 38 1 3.7918 3.4462 -0.7591 39 1 4.5632 5.1139 0.9802 40 1 6.1039 5.9989 1.0859 41 1 3.6938 8.5382 -0.0577 42 1 7.7888 4.6356 2.4424 43 1 10.2497 4.6235 2.4674 44 1 12.2825 3.0292 0.7339 45 1 12.3041 4.2589 -0.5528 46 1 12.2853 4.7585 1.1555 47 1 10.2949 3.4271 -1.6266 48 1 7.8340 3.4361 -1.6620 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726940226.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:13 Heat of formation + Delta-G solvation = -44.200959 kcal Electronic energy + Delta-G solvation = -25155.254465 eV Core-core repulsion = 21787.788761 eV Total energy + Delta-G solvation = -3367.465704 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.94693 -38.38511 -36.48961 -35.10807 -32.92860 -32.39707 -31.38214 -30.52983 -27.89547 -27.40523 -26.37182 -25.51889 -23.18886 -22.17880 -22.10339 -20.98850 -19.73683 -18.50731 -16.80636 -16.61417 -15.92901 -15.33397 -15.12665 -15.00110 -14.47347 -14.46870 -13.93299 -13.73938 -13.46855 -13.34401 -13.20690 -13.03184 -12.65465 -12.47947 -12.11073 -12.04866 -11.69902 -11.58216 -11.52322 -11.47883 -11.23766 -11.19545 -11.01296 -10.85070 -10.71109 -10.65264 -10.41583 -10.27586 -10.18628 -10.12633 -9.80297 -9.02602 -8.59616 -8.48843 -8.41581 -7.56215 -6.21659 -4.28691 1.74158 1.85605 3.19718 3.28152 3.30720 3.37007 3.83689 4.18130 4.32066 4.93776 5.05365 5.12072 5.14025 5.16740 5.18770 5.38819 5.39484 5.43758 5.53501 5.59188 5.72128 5.79516 5.82388 5.83456 5.87922 5.91677 5.99019 6.08489 6.08595 6.13566 6.16367 6.23032 6.25039 6.36659 6.42198 6.44933 6.48331 6.65295 6.78840 6.81931 6.87935 6.95158 6.99087 7.15829 7.27627 7.66994 7.76474 8.00351 8.23160 8.75306 8.99713 9.38914 10.85334 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.009010 B = 0.005208 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3106.788868 B = 5375.082888 C = 7666.501585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.116 4.116 4 C -0.074 4.074 5 H 0.071 0.929 6 C -0.151 4.151 7 C -0.129 4.129 8 C 0.522 3.478 9 O -0.558 6.558 10 N -0.564 5.564 11 C 0.239 3.761 12 C -0.535 4.535 13 H 0.062 0.938 14 C 0.066 3.934 15 N -0.891 5.891 16 Si 0.895 3.105 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.174 3.826 21 C -0.122 4.122 22 C -0.113 4.113 23 C -0.107 4.107 24 C -0.107 4.107 25 C -0.113 4.113 26 C -0.103 4.103 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.047 0.953 36 H 0.046 0.954 37 H 0.089 0.911 38 H 0.105 0.895 39 H 0.043 0.957 40 H 0.037 0.963 41 H 0.265 0.735 42 H 0.121 0.879 43 H 0.118 0.882 44 H 0.064 0.936 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.118 0.882 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.577 -9.244 1.174 9.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.153 4.153 4 C -0.093 4.093 5 H 0.090 0.910 6 C -0.208 4.208 7 C -0.169 4.169 8 C 0.312 3.688 9 O -0.438 6.438 10 N -0.292 5.292 11 C 0.121 3.879 12 C -0.573 4.573 13 H 0.080 0.920 14 C -0.137 4.137 15 N -0.529 5.529 16 Si 0.723 3.277 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 C 0.083 3.917 21 C -0.142 4.142 22 C -0.132 4.132 23 C -0.107 4.107 24 C -0.164 4.164 25 C -0.132 4.132 26 C -0.123 4.123 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.108 0.892 38 H 0.123 0.877 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.075 0.925 42 H 0.139 0.861 43 H 0.136 0.864 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.136 0.864 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.739 -9.602 1.233 10.061 hybrid contribution -0.358 0.858 -0.922 1.310 sum 2.381 -8.743 0.311 9.067 Atomic orbital electron populations 1.21784 0.96322 1.01085 1.01760 1.21567 0.95288 0.97383 1.01966 1.21678 0.95123 0.96360 1.02183 1.20895 0.94085 0.95076 0.99241 0.91043 1.21968 1.03049 0.99456 0.96343 1.21702 0.91813 0.98122 1.05236 1.20698 0.90368 0.82638 0.75053 1.90586 1.70852 1.30945 1.51418 1.46023 1.03187 1.09384 1.70590 1.19557 0.91833 0.78625 0.97923 1.21461 1.36740 1.06579 0.92548 0.92019 1.24917 0.95187 0.96468 0.97110 1.69928 1.37746 1.16678 1.28561 0.86471 0.78016 0.79131 0.84093 1.19636 1.20753 1.20806 1.17572 0.83785 0.97681 0.92701 1.21183 0.94254 1.01401 0.97322 1.20760 0.93434 1.01308 0.97670 1.19783 0.95646 1.01289 0.93974 1.20709 0.91669 1.01772 1.02244 1.20799 0.93678 1.01118 0.97561 1.21202 0.93890 0.99754 0.97457 0.92865 0.92835 0.93207 0.91870 0.92281 0.92027 0.91829 0.90836 0.93406 0.93448 0.89247 0.87705 0.93909 0.94465 0.92528 0.86142 0.86351 0.91722 0.91933 0.91925 0.86429 0.86362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.91 37.16 0.37 -1.15 16 2 C -0.12 -1.41 5.69 -26.73 -0.15 -1.57 16 3 C -0.12 -1.51 4.68 -26.73 -0.13 -1.64 16 4 C -0.07 -1.14 2.04 -90.61 -0.18 -1.33 16 5 H 0.07 1.15 7.95 -51.93 -0.41 0.74 16 6 C -0.15 -2.33 8.69 37.16 0.32 -2.01 16 7 C -0.13 -2.32 3.84 -27.88 -0.11 -2.42 16 8 C 0.52 10.82 7.24 -10.99 -0.08 10.74 16 9 O -0.56 -12.35 13.73 5.55 0.08 -12.27 16 10 N -0.56 -12.21 2.51 -114.74 -0.29 -12.50 16 11 C 0.24 5.68 4.88 -5.19 -0.03 5.65 16 12 C -0.53 -13.79 9.16 -34.44 -0.32 -14.11 16 13 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 14 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.89 -24.32 13.29 55.43 0.74 -23.58 16 16 Si 0.90 20.48 29.54 -169.99 -5.02 15.45 16 17 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 C 0.17 3.60 4.75 -83.69 -0.40 3.20 16 21 C -0.12 -2.26 9.69 -39.40 -0.38 -2.64 16 22 C -0.11 -1.79 9.69 -39.61 -0.38 -2.18 16 23 C -0.11 -1.62 5.88 -104.59 -0.62 -2.23 16 24 C -0.11 -1.20 10.01 36.01 0.36 -0.84 16 25 C -0.11 -1.85 9.69 -39.61 -0.38 -2.24 16 26 C -0.10 -2.01 9.56 -39.39 -0.38 -2.39 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.71 6.57 -51.93 -0.34 0.37 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.07 1.31 5.95 -51.93 -0.31 1.01 16 35 H 0.05 0.64 6.57 -51.93 -0.34 0.30 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 1.55 7.26 -51.93 -0.38 1.18 16 38 H 0.10 1.99 7.91 -51.93 -0.41 1.58 16 39 H 0.04 1.02 6.47 -51.93 -0.34 0.69 16 40 H 0.04 0.94 7.86 -51.93 -0.41 0.54 16 41 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 42 H 0.12 2.12 8.06 -52.49 -0.42 1.70 16 43 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 46 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 47 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 48 H 0.12 2.34 8.06 -52.49 -0.42 1.91 16 LS Contribution 387.44 15.07 5.84 5.84 Total: -1.00 -28.50 387.44 -9.62 -38.13 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -8.39 Total: 4.43 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -2.57 Total: -15.50 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 0.45 Total: -36.08 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.08 Total: -12.27 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -28.50 -9.62 -38.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726940226.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.074 kcal (2) G-P(sol) polarization free energy of solvation -28.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds