Wall clock time and date at job start Tue Mar 31 2020 09:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47066 * 2 1 4 4 C 1.53004 * 109.47388 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47132 * 305.00891 * 4 3 2 6 6 C 1.53005 * 109.46410 * 65.00442 * 4 3 2 7 7 C 1.53001 * 109.47085 * 185.00170 * 4 3 2 8 8 C 1.50697 * 109.46646 * 175.00383 * 7 4 3 9 9 O 1.21291 * 120.00442 * 359.97438 * 8 7 4 10 10 N 1.34779 * 120.00017 * 180.02562 * 8 7 4 11 11 C 1.46502 * 119.99938 * 4.73184 * 10 8 7 12 12 C 1.50700 * 109.47139 * 270.00351 * 11 10 8 13 13 H 1.08000 * 119.99916 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00272 * 179.97438 * 12 11 10 15 15 N 1.31521 * 119.99639 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00223 * 179.97438 * 14 12 11 17 17 H 1.48489 * 109.47149 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46913 * 120.00544 * 16 14 12 19 19 H 1.48508 * 109.46889 * 239.99924 * 16 14 12 20 20 C 1.39932 * 120.00300 * 184.73263 * 10 8 7 21 21 C 1.38869 * 120.06903 * 247.87831 * 20 10 8 22 22 C 1.38106 * 119.92510 * 179.72527 * 21 20 10 23 23 C 1.38283 * 120.07354 * 0.22717 * 22 21 20 24 24 C 1.50706 * 119.92878 * 180.02562 * 23 22 21 25 25 C 1.38279 * 120.14292 * 0.04798 * 23 22 21 26 26 C 1.38118 * 120.06867 * 359.95489 * 25 23 22 27 27 H 1.09005 * 109.46588 * 299.99292 * 1 2 3 28 28 H 1.08999 * 109.47603 * 59.99410 * 1 2 3 29 29 H 1.09001 * 109.46859 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46918 * 240.01120 * 2 1 3 31 31 H 1.08999 * 109.47603 * 120.00590 * 2 1 3 32 32 H 1.09002 * 109.47007 * 60.00111 * 3 2 1 33 33 H 1.08999 * 109.47391 * 300.00720 * 3 2 1 34 34 H 1.09004 * 109.46655 * 180.02562 * 6 4 3 35 35 H 1.09002 * 109.47101 * 299.99860 * 6 4 3 36 36 H 1.08992 * 109.47637 * 60.00153 * 6 4 3 37 37 H 1.08991 * 109.47346 * 55.00481 * 7 4 3 38 38 H 1.08999 * 109.47313 * 295.00277 * 7 4 3 39 39 H 1.09001 * 109.47108 * 30.00068 * 11 10 8 40 40 H 1.08994 * 109.47001 * 150.00263 * 11 10 8 41 41 H 0.96997 * 119.99850 * 179.97438 * 15 14 12 42 42 H 1.07995 * 120.03600 * 359.97438 * 21 20 10 43 43 H 1.08003 * 119.96186 * 180.25373 * 22 21 20 44 44 H 1.08995 * 109.46855 * 90.00313 * 24 23 22 45 45 H 1.09005 * 109.46361 * 210.00016 * 24 23 22 46 46 H 1.08998 * 109.47145 * 329.99652 * 24 23 22 47 47 H 1.07994 * 119.97048 * 179.97438 * 25 23 22 48 48 H 1.07997 * 120.03656 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9330 0.8532 0.8426 6 6 4.0804 0.8328 -1.3065 7 6 4.0799 2.8797 0.1264 8 6 5.5817 2.8706 0.2505 9 8 6.1849 1.8184 0.2398 10 7 6.2547 4.0318 0.3743 11 6 5.5212 5.2945 0.4925 12 6 5.2854 5.8690 -0.8806 13 1 5.6462 5.3461 -1.7539 14 6 4.6091 7.0621 -1.0219 15 7 4.1693 7.6986 0.0417 16 14 4.3174 7.7746 -2.7239 17 1 4.9063 6.8724 -3.7457 18 1 2.8575 7.9054 -2.9621 19 1 4.9559 9.1121 -2.8167 20 6 7.6539 4.0314 0.3898 21 6 8.3369 4.3706 1.5504 22 6 9.7179 4.3638 1.5640 23 6 10.4205 4.0242 0.4224 24 6 11.9274 4.0172 0.4411 25 6 9.7434 3.6915 -0.7365 26 6 8.3623 3.6965 -0.7567 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 5.1705 0.8325 -1.3059 35 1 3.7171 -0.1909 -1.3961 36 1 3.7175 1.4221 -2.1485 37 1 3.6450 3.3433 1.0117 38 1 3.7918 3.4462 -0.7591 39 1 4.5632 5.1139 0.9802 40 1 6.1039 5.9989 1.0859 41 1 3.6938 8.5382 -0.0577 42 1 7.7888 4.6356 2.4424 43 1 10.2497 4.6235 2.4674 44 1 12.2825 3.0292 0.7339 45 1 12.3041 4.2589 -0.5528 46 1 12.2853 4.7585 1.1555 47 1 10.2949 3.4271 -1.6266 48 1 7.8340 3.4361 -1.6620 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726940226.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:11 Heat of formation + Delta-G solvation = -55.719660 kcal Electronic energy + Delta-G solvation = -25155.753953 eV Core-core repulsion = 21787.788761 eV Total energy + Delta-G solvation = -3367.965192 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.51288 -39.77847 -37.72298 -36.77118 -34.75010 -33.62636 -32.70686 -31.89076 -29.33952 -29.16871 -27.47053 -26.79616 -25.04701 -23.54777 -23.34654 -22.17516 -20.97684 -20.04605 -18.72793 -18.26173 -17.61656 -16.74127 -16.48179 -16.39087 -16.16136 -15.71723 -15.35226 -14.91361 -14.71404 -14.47762 -14.38622 -14.35582 -14.27727 -14.04330 -13.54894 -13.18566 -13.15032 -12.97576 -12.82987 -12.79048 -12.68874 -12.58283 -12.47346 -12.29037 -12.10286 -12.02367 -11.80018 -11.72138 -11.60564 -11.45916 -11.25302 -10.72494 -10.54549 -9.99101 -9.86657 -9.11014 -8.23655 -6.38298 0.36066 0.47803 1.37419 1.40342 1.50780 1.70010 2.22106 2.40355 2.81152 3.06550 3.71681 3.86815 3.94125 3.98511 4.05057 4.08136 4.23209 4.30539 4.44892 4.48096 4.51626 4.56744 4.58059 4.73904 4.81125 4.83092 4.83815 4.90215 4.92236 4.96918 4.99217 5.07587 5.09061 5.15202 5.20011 5.20398 5.23836 5.32677 5.40037 5.44799 5.55956 5.56771 5.58921 5.67015 5.67975 5.83049 6.00539 6.17970 6.49369 6.74209 7.27107 7.37870 8.82252 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.009010 B = 0.005208 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3106.788868 B = 5375.082888 C = 7666.501585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.111 4.111 4 C -0.067 4.067 5 H 0.064 0.936 6 C -0.145 4.145 7 C -0.123 4.123 8 C 0.516 3.484 9 O -0.574 6.574 10 N -0.567 5.567 11 C 0.256 3.744 12 C -0.542 4.542 13 H 0.049 0.951 14 C 0.025 3.975 15 N -0.919 5.919 16 Si 0.955 3.045 17 H -0.273 1.273 18 H -0.272 1.272 19 H -0.279 1.279 20 C 0.131 3.869 21 C -0.139 4.139 22 C -0.110 4.110 23 C -0.099 4.099 24 C -0.104 4.104 25 C -0.114 4.114 26 C -0.127 4.127 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.044 0.956 35 H 0.069 0.931 36 H 0.048 0.952 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.037 0.963 40 H 0.016 0.984 41 H 0.269 0.731 42 H 0.119 0.881 43 H 0.153 0.847 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.145 0.855 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.493 -9.650 0.807 10.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.148 4.148 4 C -0.086 4.086 5 H 0.083 0.917 6 C -0.203 4.203 7 C -0.163 4.163 8 C 0.307 3.693 9 O -0.455 6.455 10 N -0.294 5.294 11 C 0.137 3.863 12 C -0.580 4.580 13 H 0.068 0.932 14 C -0.176 4.176 15 N -0.558 5.558 16 Si 0.780 3.220 17 H -0.197 1.197 18 H -0.198 1.198 19 H -0.204 1.204 20 C 0.041 3.959 21 C -0.159 4.159 22 C -0.129 4.129 23 C -0.100 4.100 24 C -0.161 4.161 25 C -0.133 4.133 26 C -0.146 4.146 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.055 0.945 40 H 0.034 0.966 41 H 0.078 0.922 42 H 0.137 0.863 43 H 0.170 0.830 44 H 0.100 0.900 45 H 0.095 0.905 46 H 0.098 0.902 47 H 0.163 0.837 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.664 -10.016 0.868 10.700 hybrid contribution -0.515 0.969 -0.772 1.342 sum 3.149 -9.047 0.096 9.579 Atomic orbital electron populations 1.21766 0.95071 1.02028 1.01894 1.21546 0.96362 0.95840 1.02201 1.21639 0.92991 0.97920 1.02288 1.20864 0.95820 0.92976 0.98955 0.91730 1.21896 1.01126 1.00876 0.96358 1.21717 0.90011 0.99940 1.04627 1.21170 0.91394 0.82198 0.74539 1.90558 1.71489 1.31253 1.52239 1.45964 1.04012 1.08739 1.70664 1.19172 0.91307 0.79183 0.96656 1.21575 1.36718 1.06863 0.92875 0.93241 1.25611 0.94873 0.96689 1.00426 1.70010 1.38318 1.17125 1.30312 0.85545 0.78250 0.78231 0.79935 1.19710 1.19759 1.20419 1.17945 0.83381 1.00385 0.94209 1.21355 0.95780 1.02038 0.96691 1.21183 0.92344 0.99978 0.99365 1.20314 0.98097 0.98709 0.92838 1.20794 0.88141 1.03345 1.03807 1.21154 0.92476 1.00294 0.99355 1.21250 0.95481 1.01305 0.96614 0.92718 0.92754 0.91885 0.91618 0.92076 0.91784 0.91885 0.93657 0.91181 0.93325 0.88961 0.88963 0.94480 0.96592 0.92194 0.86297 0.82983 0.90047 0.90538 0.90204 0.83687 0.88082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.91 71.98 0.71 -2.01 16 2 C -0.12 -2.59 5.69 30.59 0.17 -2.41 16 3 C -0.11 -2.83 4.68 30.60 0.14 -2.68 16 4 C -0.07 -2.10 2.04 -10.79 -0.02 -2.12 16 5 H 0.06 2.11 7.95 -2.39 -0.02 2.09 16 6 C -0.15 -4.53 8.69 71.98 0.63 -3.90 16 7 C -0.12 -4.61 3.84 29.85 0.11 -4.50 16 8 C 0.52 22.46 7.24 87.66 0.63 23.10 16 9 O -0.57 -26.54 13.73 -3.06 -0.04 -26.58 16 10 N -0.57 -25.84 2.51 -635.30 -1.59 -27.43 16 11 C 0.26 12.78 4.88 85.63 0.42 13.20 16 12 C -0.54 -28.87 9.16 25.60 0.23 -28.64 16 13 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 14 C 0.02 1.30 5.46 84.65 0.46 1.77 16 15 N -0.92 -50.83 13.29 21.45 0.28 -50.55 16 16 Si 0.96 42.23 29.54 68.60 2.03 44.25 16 17 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 18 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 19 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 20 C 0.13 5.66 4.75 38.15 0.18 5.84 16 21 C -0.14 -5.25 9.69 22.39 0.22 -5.03 16 22 C -0.11 -3.33 9.69 22.25 0.22 -3.11 16 23 C -0.10 -2.79 5.88 -19.84 -0.12 -2.90 16 24 C -0.10 -1.92 10.01 71.24 0.71 -1.21 16 25 C -0.11 -3.65 9.69 22.25 0.22 -3.43 16 26 C -0.13 -5.10 9.56 22.39 0.21 -4.89 16 27 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 28 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 1.36 6.57 -2.39 -0.02 1.34 16 31 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.04 1.67 5.95 -2.38 -0.01 1.65 16 35 H 0.07 1.83 6.57 -2.39 -0.02 1.82 16 36 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.09 3.35 7.26 -2.39 -0.02 3.33 16 38 H 0.09 3.68 7.91 -2.39 -0.02 3.66 16 39 H 0.04 1.87 6.47 -2.39 -0.02 1.85 16 40 H 0.02 0.86 7.86 -2.39 -0.02 0.84 16 41 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 42 H 0.12 4.36 8.06 -2.91 -0.02 4.33 16 43 H 0.15 3.48 8.06 -2.91 -0.02 3.45 16 44 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.08 1.24 8.08 -2.38 -0.02 1.22 16 46 H 0.08 1.24 8.08 -2.39 -0.02 1.22 16 47 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 48 H 0.10 4.26 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -62.84 387.44 6.72 -56.12 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: 0.90 Total: 27.13 kcal Atomic # 6 Polarization: -28.08 SS G_CDS: 5.14 Total: -22.94 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -1.31 Total: -77.98 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: -0.04 Total: -26.58 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Total: -62.84 6.72 -56.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726940226.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.398 kcal (2) G-P(sol) polarization free energy of solvation -62.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds