Wall clock time and date at job start Tue Mar 31 2020 10:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53007 * 109.47129 * 2 1 4 4 H 1.09003 * 108.73980 * 56.54272 * 3 2 1 5 5 C 1.54175 * 108.85252 * 298.09238 * 3 2 1 6 6 C 1.53825 * 111.96411 * 197.68033 * 5 3 2 7 7 C 1.50812 * 111.62357 * 319.03580 * 6 5 3 8 8 N 1.47640 * 108.05096 * 95.05915 * 7 6 5 9 9 C 1.46904 * 110.99867 * 150.34495 * 8 7 6 10 10 C 1.50703 * 109.47128 * 298.89349 * 9 8 7 11 11 C 1.38294 * 119.92983 * 90.00153 * 10 9 8 12 12 C 1.38096 * 120.06969 * 179.97438 * 11 10 9 13 13 C 1.38887 * 119.92909 * 359.97438 * 12 11 10 14 14 O 1.35746 * 120.06604 * 180.02562 * 13 12 11 15 15 C 1.34833 * 117.00531 * 5.54199 * 14 13 12 16 16 H 1.07995 * 119.99432 * 354.93787 * 15 14 13 17 17 C 1.38650 * 120.00178 * 174.66237 * 15 14 13 18 18 N 1.31559 * 119.99889 * 180.26988 * 17 15 14 19 19 Si 1.86798 * 120.00128 * 0.27972 * 17 15 14 20 20 H 1.48494 * 109.47534 * 89.99648 * 19 17 15 21 21 H 1.48504 * 109.47255 * 209.99738 * 19 17 15 22 22 H 1.48504 * 109.47038 * 329.99239 * 19 17 15 23 23 C 1.38871 * 119.86145 * 0.28182 * 13 12 11 24 24 C 1.38100 * 119.92983 * 359.42253 * 23 13 12 25 25 C 1.39775 * 114.75813 * 277.20133 * 8 7 6 26 26 C 1.50747 * 108.85679 * 175.00307 * 3 2 1 27 27 H 1.09007 * 109.47595 * 59.99780 * 1 2 3 28 28 H 1.09001 * 109.46974 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47560 * 299.99971 * 1 2 3 30 30 H 1.08994 * 109.47293 * 240.00415 * 2 1 3 31 31 H 1.09001 * 109.47351 * 119.99876 * 2 1 3 32 32 H 1.08997 * 108.97981 * 318.31746 * 5 3 2 33 33 H 1.08998 * 108.98212 * 77.12346 * 5 3 2 34 34 H 1.08996 * 109.04874 * 79.59124 * 6 5 3 35 35 H 1.09005 * 109.04539 * 198.56009 * 6 5 3 36 36 H 1.09001 * 109.74722 * 335.42689 * 7 6 5 37 37 H 1.08997 * 109.74954 * 214.69449 * 7 6 5 38 38 H 1.08999 * 109.46946 * 178.89468 * 9 8 7 39 39 H 1.08993 * 109.46963 * 58.89530 * 9 8 7 40 40 H 1.08006 * 119.96631 * 0.02562 * 11 10 9 41 41 H 1.08002 * 120.04071 * 180.02562 * 12 11 10 42 42 H 0.97000 * 119.99831 * 180.02562 * 18 17 15 43 43 H 1.07995 * 120.03647 * 179.71990 * 23 13 12 44 44 H 1.07999 * 119.96606 * 180.27624 * 24 23 13 45 45 H 1.08997 * 109.01810 * 182.86339 * 25 8 7 46 46 H 1.08995 * 109.01802 * 301.76003 * 25 8 7 47 47 H 1.08992 * 109.54691 * 93.95941 * 26 3 2 48 48 H 1.09004 * 109.61836 * 333.73142 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6201 1.9624 0.8612 5 6 1.5582 2.1413 -1.2872 6 6 2.3626 3.4184 -1.5840 7 6 2.6329 4.2094 -0.3288 8 7 3.9674 3.8275 0.1742 9 6 4.5980 4.9426 0.8932 10 6 4.7753 6.1088 -0.0447 11 6 3.7745 7.0556 -0.1654 12 6 3.9341 8.1257 -1.0236 13 6 5.1016 8.2507 -1.7655 14 8 5.2617 9.3018 -2.6096 15 6 4.3021 10.2489 -2.5968 16 1 3.4156 10.1112 -1.9957 17 6 4.4563 11.4022 -3.3508 18 7 3.5224 12.3287 -3.3342 19 14 5.9897 11.6403 -4.3906 20 1 5.7598 11.0816 -5.7471 21 1 6.2953 13.0896 -4.4975 22 1 7.1334 10.9390 -3.7538 23 6 6.1024 7.2955 -1.6461 24 6 5.9393 6.2310 -0.7816 25 6 3.9916 2.6593 0.9413 26 6 3.5422 1.4282 0.1243 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6643 1.4526 -2.1253 33 1 0.5064 2.4041 -1.1755 34 1 3.3124 3.1422 -2.0420 35 1 1.7994 4.0397 -2.2804 36 1 1.8767 3.9789 0.4217 37 1 2.6158 5.2756 -0.5544 38 1 5.5712 4.6280 1.2698 39 1 3.9643 5.2411 1.7283 40 1 2.8674 6.9584 0.4127 41 1 3.1524 8.8650 -1.1172 42 1 3.6301 13.1354 -3.8620 43 1 7.0094 7.3875 -2.2250 44 1 6.7192 5.4901 -0.6849 45 1 5.0058 2.4937 1.3044 46 1 3.3244 2.7808 1.7946 47 1 3.9906 1.4659 -0.8684 48 1 3.8587 0.5176 0.6330 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000735310728.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:27 Heat of formation + Delta-G solvation = -12.518962 kcal Electronic energy + Delta-G solvation = -24910.321413 eV Core-core repulsion = 21544.229543 eV Total energy + Delta-G solvation = -3366.091870 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.96156 -38.99688 -37.08333 -35.65994 -32.69913 -32.42935 -31.53828 -30.24606 -29.58176 -26.64621 -25.72620 -25.13691 -23.62363 -22.24441 -21.96262 -20.81806 -20.28684 -19.10935 -17.86113 -17.23055 -16.16529 -15.65679 -15.33938 -15.20523 -14.78725 -14.33628 -14.07937 -13.99718 -13.81372 -13.71477 -13.47105 -13.05734 -13.00748 -12.59571 -12.57182 -12.21217 -12.16200 -12.12462 -11.74139 -11.55507 -11.34205 -11.25299 -11.08886 -10.88803 -10.77185 -10.61720 -10.48005 -10.37406 -10.27342 -10.20002 -10.11379 -9.37563 -8.86015 -8.21872 -8.06653 -7.29182 -6.41324 -4.07940 2.13768 2.20641 3.23047 3.25785 3.40639 4.03587 4.24100 4.52481 4.56328 4.62279 4.73045 4.87226 4.97283 5.09589 5.12115 5.16431 5.18559 5.24841 5.33247 5.36776 5.42428 5.50813 5.58781 5.66259 5.68091 5.73450 5.76025 5.79599 5.82418 5.85225 5.88059 5.98316 6.03619 6.13470 6.14047 6.14484 6.23792 6.34746 6.40342 6.50132 6.59400 6.80377 7.05028 7.21149 7.27921 7.34123 7.58160 7.63522 7.80811 8.04632 8.94164 9.57151 10.66402 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.025860 B = 0.002843 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.497796 B = 9845.098608 C =10318.600611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.088 4.088 4 H 0.063 0.937 5 C -0.110 4.110 6 C -0.117 4.117 7 C 0.058 3.942 8 N -0.550 5.550 9 C 0.116 3.884 10 C -0.168 4.168 11 C -0.069 4.069 12 C -0.221 4.221 13 C 0.161 3.839 14 O -0.218 6.218 15 C -0.389 4.389 16 H 0.106 0.894 17 C 0.063 3.937 18 N -0.881 5.881 19 Si 0.905 3.095 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.259 1.259 23 C -0.193 4.193 24 C -0.055 4.055 25 C 0.078 3.922 26 C -0.113 4.113 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.034 0.966 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.031 0.969 40 H 0.106 0.894 41 H 0.132 0.868 42 H 0.279 0.721 43 H 0.116 0.884 44 H 0.113 0.887 45 H 0.066 0.934 46 H 0.013 0.987 47 H 0.075 0.925 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.020 -21.658 7.740 23.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.106 4.106 4 H 0.081 0.919 5 C -0.148 4.148 6 C -0.155 4.155 7 C -0.068 4.068 8 N -0.274 5.274 9 C -0.010 4.010 10 C -0.170 4.170 11 C -0.088 4.088 12 C -0.240 4.240 13 C 0.109 3.891 14 O -0.123 6.123 15 C -0.464 4.464 16 H 0.123 0.877 17 C -0.140 4.140 18 N -0.519 5.519 19 Si 0.731 3.269 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.183 1.183 23 C -0.213 4.213 24 C -0.073 4.073 25 C -0.052 4.052 26 C -0.151 4.151 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.052 0.948 37 H 0.107 0.893 38 H 0.090 0.910 39 H 0.049 0.951 40 H 0.124 0.876 41 H 0.149 0.851 42 H 0.089 0.911 43 H 0.134 0.866 44 H 0.131 0.869 45 H 0.084 0.916 46 H 0.031 0.969 47 H 0.093 0.907 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.670 -21.491 7.124 22.703 hybrid contribution -0.142 0.438 0.243 0.521 sum -1.812 -21.053 7.368 22.379 Atomic orbital electron populations 1.21824 0.96139 1.01241 1.01948 1.21705 0.95794 0.96602 1.01645 1.21075 0.95715 0.95376 0.98455 0.91905 1.22004 0.99203 0.96789 0.96808 1.21391 1.00826 0.95598 0.97683 1.21955 0.87696 1.01114 0.96073 1.58851 1.22366 1.03479 1.42686 1.20775 0.98369 0.88834 0.93020 1.19158 0.96314 0.97667 1.03815 1.20629 0.97161 0.93633 0.97342 1.21231 0.99586 1.01165 1.02022 1.19133 0.93011 0.88161 0.88802 1.83573 1.47139 1.28831 1.52797 1.20762 0.99052 0.96481 1.30131 0.87672 1.24467 0.98466 0.93872 0.97216 1.69648 1.33531 1.08362 1.40330 0.86180 0.82950 0.77284 0.80495 1.19885 1.20844 1.18340 1.20211 0.99366 0.96838 1.04848 1.20442 0.96448 0.95837 0.94611 1.20907 1.00219 0.90345 0.93734 1.21558 0.95162 0.96876 1.01493 0.92446 0.93144 0.92954 0.92109 0.92303 0.92393 0.92573 0.90631 0.92085 0.94786 0.89338 0.90952 0.95056 0.87611 0.85072 0.91075 0.86638 0.86944 0.91559 0.96918 0.90681 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.63 37.15 0.36 -0.78 16 2 C -0.12 -0.93 5.15 -26.73 -0.14 -1.06 16 3 C -0.09 -0.79 1.71 -91.13 -0.16 -0.94 16 4 H 0.06 0.62 6.57 -51.93 -0.34 0.28 16 5 C -0.11 -1.07 4.46 -25.69 -0.11 -1.19 16 6 C -0.12 -1.38 5.41 -27.40 -0.15 -1.53 16 7 C 0.06 0.73 5.16 -4.51 -0.02 0.71 16 8 N -0.55 -6.83 3.96 -241.45 -0.96 -7.79 16 9 C 0.12 1.53 5.13 -4.97 -0.03 1.50 16 10 C -0.17 -2.73 4.88 -104.58 -0.51 -3.24 16 11 C -0.07 -1.22 7.71 -39.61 -0.31 -1.52 16 12 C -0.22 -4.70 9.17 -39.39 -0.36 -5.06 16 13 C 0.16 3.70 6.65 -39.11 -0.26 3.44 16 14 O -0.22 -5.76 8.59 0.05 0.00 -5.76 16 15 C -0.39 -10.94 9.95 30.88 0.31 -10.64 16 16 H 0.11 3.02 5.44 -52.49 -0.29 2.73 16 17 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 18 N -0.88 -25.47 13.96 55.48 0.77 -24.70 16 19 Si 0.91 21.73 28.62 -169.99 -4.86 16.86 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.26 -6.24 7.11 56.52 0.40 -5.84 16 23 C -0.19 -3.82 9.99 -39.40 -0.39 -4.22 16 24 C -0.05 -0.92 9.69 -39.61 -0.38 -1.31 16 25 C 0.08 0.81 4.93 -6.75 -0.03 0.78 16 26 C -0.11 -1.05 5.16 -27.11 -0.14 -1.19 16 27 H 0.06 0.43 6.83 -51.92 -0.35 0.08 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.46 8.08 -51.93 -0.42 0.05 16 31 H 0.06 0.43 7.95 -51.93 -0.41 0.02 16 32 H 0.06 0.54 7.94 -51.93 -0.41 0.13 16 33 H 0.06 0.53 7.38 -51.93 -0.38 0.15 16 34 H 0.08 0.98 7.26 -51.93 -0.38 0.60 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.03 0.41 6.66 -51.93 -0.35 0.06 16 37 H 0.09 1.28 4.46 -51.93 -0.23 1.05 16 38 H 0.07 0.87 7.78 -51.93 -0.40 0.47 16 39 H 0.03 0.40 8.08 -51.93 -0.42 -0.02 16 40 H 0.11 1.64 7.55 -52.48 -0.40 1.25 16 41 H 0.13 2.95 5.64 -52.49 -0.30 2.65 16 42 H 0.28 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 44 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 45 H 0.07 0.65 7.80 -51.93 -0.40 0.25 16 46 H 0.01 0.14 7.54 -51.93 -0.39 -0.25 16 47 H 0.07 0.78 7.11 -51.93 -0.37 0.41 16 48 H 0.06 0.52 7.61 -51.93 -0.40 0.12 16 LS Contribution 363.25 15.07 5.47 5.47 Total: -1.00 -28.37 363.25 -9.88 -38.25 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -7.89 Total: 2.22 kcal Atomic # 6 Polarization: -22.14 SS G_CDS: -2.42 Total: -24.56 kcal Atomic # 7 Polarization: -32.30 SS G_CDS: -0.18 Total: -32.48 kcal Atomic # 8 Polarization: -5.76 SS G_CDS: 0.00 Total: -5.76 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.86 Total: 16.86 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.37 -9.88 -38.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735310728.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.734 kcal (2) G-P(sol) polarization free energy of solvation -28.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds