Wall clock time and date at job start Tue Mar 31 2020 10:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53007 * 109.47129 * 2 1 4 4 H 1.09003 * 108.73980 * 56.54272 * 3 2 1 5 5 C 1.54175 * 108.85252 * 298.09238 * 3 2 1 6 6 C 1.53825 * 111.96411 * 197.68033 * 5 3 2 7 7 C 1.50812 * 111.62357 * 319.03580 * 6 5 3 8 8 N 1.47640 * 108.05096 * 95.05915 * 7 6 5 9 9 C 1.46904 * 110.99867 * 150.34495 * 8 7 6 10 10 C 1.50703 * 109.47128 * 298.89349 * 9 8 7 11 11 C 1.38294 * 119.92983 * 90.00153 * 10 9 8 12 12 C 1.38096 * 120.06969 * 179.97438 * 11 10 9 13 13 C 1.38887 * 119.92909 * 359.97438 * 12 11 10 14 14 O 1.35746 * 120.06604 * 180.02562 * 13 12 11 15 15 C 1.34833 * 117.00531 * 5.54199 * 14 13 12 16 16 H 1.07995 * 119.99432 * 354.93787 * 15 14 13 17 17 C 1.38650 * 120.00178 * 174.66237 * 15 14 13 18 18 N 1.31559 * 119.99889 * 180.26988 * 17 15 14 19 19 Si 1.86798 * 120.00128 * 0.27972 * 17 15 14 20 20 H 1.48494 * 109.47534 * 89.99648 * 19 17 15 21 21 H 1.48504 * 109.47255 * 209.99738 * 19 17 15 22 22 H 1.48504 * 109.47038 * 329.99239 * 19 17 15 23 23 C 1.38871 * 119.86145 * 0.28182 * 13 12 11 24 24 C 1.38100 * 119.92983 * 359.42253 * 23 13 12 25 25 C 1.39775 * 114.75813 * 277.20133 * 8 7 6 26 26 C 1.50747 * 108.85679 * 175.00307 * 3 2 1 27 27 H 1.09007 * 109.47595 * 59.99780 * 1 2 3 28 28 H 1.09001 * 109.46974 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47560 * 299.99971 * 1 2 3 30 30 H 1.08994 * 109.47293 * 240.00415 * 2 1 3 31 31 H 1.09001 * 109.47351 * 119.99876 * 2 1 3 32 32 H 1.08997 * 108.97981 * 318.31746 * 5 3 2 33 33 H 1.08998 * 108.98212 * 77.12346 * 5 3 2 34 34 H 1.08996 * 109.04874 * 79.59124 * 6 5 3 35 35 H 1.09005 * 109.04539 * 198.56009 * 6 5 3 36 36 H 1.09001 * 109.74722 * 335.42689 * 7 6 5 37 37 H 1.08997 * 109.74954 * 214.69449 * 7 6 5 38 38 H 1.08999 * 109.46946 * 178.89468 * 9 8 7 39 39 H 1.08993 * 109.46963 * 58.89530 * 9 8 7 40 40 H 1.08006 * 119.96631 * 0.02562 * 11 10 9 41 41 H 1.08002 * 120.04071 * 180.02562 * 12 11 10 42 42 H 0.97000 * 119.99831 * 180.02562 * 18 17 15 43 43 H 1.07995 * 120.03647 * 179.71990 * 23 13 12 44 44 H 1.07999 * 119.96606 * 180.27624 * 24 23 13 45 45 H 1.08997 * 109.01810 * 182.86339 * 25 8 7 46 46 H 1.08995 * 109.01802 * 301.76003 * 25 8 7 47 47 H 1.08992 * 109.54691 * 93.95941 * 26 3 2 48 48 H 1.09004 * 109.61836 * 333.73142 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6201 1.9624 0.8612 5 6 1.5582 2.1413 -1.2872 6 6 2.3626 3.4184 -1.5840 7 6 2.6329 4.2094 -0.3288 8 7 3.9674 3.8275 0.1742 9 6 4.5980 4.9426 0.8932 10 6 4.7753 6.1088 -0.0447 11 6 3.7745 7.0556 -0.1654 12 6 3.9341 8.1257 -1.0236 13 6 5.1016 8.2507 -1.7655 14 8 5.2617 9.3018 -2.6096 15 6 4.3021 10.2489 -2.5968 16 1 3.4156 10.1112 -1.9957 17 6 4.4563 11.4022 -3.3508 18 7 3.5224 12.3287 -3.3342 19 14 5.9897 11.6403 -4.3906 20 1 5.7598 11.0816 -5.7471 21 1 6.2953 13.0896 -4.4975 22 1 7.1334 10.9390 -3.7538 23 6 6.1024 7.2955 -1.6461 24 6 5.9393 6.2310 -0.7816 25 6 3.9916 2.6593 0.9413 26 6 3.5422 1.4282 0.1243 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6643 1.4526 -2.1253 33 1 0.5064 2.4041 -1.1755 34 1 3.3124 3.1422 -2.0420 35 1 1.7994 4.0397 -2.2804 36 1 1.8767 3.9789 0.4217 37 1 2.6158 5.2756 -0.5544 38 1 5.5712 4.6280 1.2698 39 1 3.9643 5.2411 1.7283 40 1 2.8674 6.9584 0.4127 41 1 3.1524 8.8650 -1.1172 42 1 3.6301 13.1354 -3.8620 43 1 7.0094 7.3875 -2.2250 44 1 6.7192 5.4901 -0.6849 45 1 5.0058 2.4937 1.3044 46 1 3.3244 2.7808 1.7946 47 1 3.9906 1.4659 -0.8684 48 1 3.8587 0.5176 0.6330 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000735310728.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:26 Heat of formation + Delta-G solvation = -26.787622 kcal Electronic energy + Delta-G solvation = -24910.940148 eV Core-core repulsion = 21544.229543 eV Total energy + Delta-G solvation = -3366.710605 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.15758 -40.41591 -38.53072 -36.70419 -34.46967 -33.57220 -32.59140 -31.78830 -30.74389 -27.93868 -27.09604 -26.26250 -24.81669 -23.68569 -22.83902 -21.94171 -21.55472 -19.97497 -19.74310 -19.05380 -17.12487 -16.75296 -16.55452 -16.42869 -16.07298 -15.69932 -15.61884 -15.40824 -15.01645 -14.80647 -14.52232 -14.39174 -14.30226 -14.03541 -13.81941 -13.69251 -13.17198 -13.07347 -12.89181 -12.65607 -12.52165 -12.39176 -12.29046 -12.25948 -11.97753 -11.91086 -11.79553 -11.46223 -11.25778 -11.13691 -11.08626 -11.00589 -10.87406 -9.74909 -9.10547 -8.90691 -8.49968 -6.22355 0.58375 0.64813 1.31308 1.35785 1.51643 2.28094 2.71763 2.98499 3.14835 3.32622 3.79661 3.90493 3.92670 4.01692 4.03509 4.19645 4.25682 4.32941 4.34222 4.45900 4.48123 4.55287 4.60332 4.66051 4.72719 4.76122 4.77687 4.82434 4.86652 4.96676 5.01594 5.05837 5.13298 5.15263 5.26725 5.27114 5.29847 5.31751 5.37756 5.39306 5.46102 5.54492 5.59728 5.67343 5.77898 5.82971 5.91961 6.22971 6.27497 6.65126 6.84630 7.59925 8.61783 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.025860 B = 0.002843 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.497796 B = 9845.098608 C =10318.600611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C -0.084 4.084 4 H 0.056 0.944 5 C -0.106 4.106 6 C -0.114 4.114 7 C 0.059 3.941 8 N -0.553 5.553 9 C 0.117 3.883 10 C -0.143 4.143 11 C -0.066 4.066 12 C -0.236 4.236 13 C 0.120 3.880 14 O -0.246 6.246 15 C -0.398 4.398 16 H 0.080 0.920 17 C 0.009 3.991 18 N -0.925 5.925 19 Si 0.971 3.029 20 H -0.266 1.266 21 H -0.268 1.268 22 H -0.262 1.262 23 C -0.193 4.193 24 C -0.048 4.048 25 C 0.074 3.926 26 C -0.108 4.108 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.041 0.959 37 H 0.067 0.933 38 H 0.096 0.904 39 H 0.040 0.960 40 H 0.127 0.873 41 H 0.105 0.895 42 H 0.284 0.716 43 H 0.127 0.873 44 H 0.151 0.849 45 H 0.079 0.921 46 H 0.016 0.984 47 H 0.064 0.936 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.603 -25.012 9.016 26.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.103 4.103 4 H 0.075 0.925 5 C -0.143 4.143 6 C -0.152 4.152 7 C -0.067 4.067 8 N -0.278 5.278 9 C -0.009 4.009 10 C -0.144 4.144 11 C -0.085 4.085 12 C -0.256 4.256 13 C 0.071 3.929 14 O -0.154 6.154 15 C -0.474 4.474 16 H 0.097 0.903 17 C -0.189 4.189 18 N -0.566 5.566 19 Si 0.793 3.207 20 H -0.191 1.191 21 H -0.192 1.192 22 H -0.187 1.187 23 C -0.212 4.212 24 C -0.066 4.066 25 C -0.055 4.055 26 C -0.146 4.146 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.114 0.886 39 H 0.058 0.942 40 H 0.145 0.855 41 H 0.123 0.877 42 H 0.094 0.906 43 H 0.145 0.855 44 H 0.169 0.831 45 H 0.098 0.902 46 H 0.034 0.966 47 H 0.083 0.917 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.257 -24.892 8.428 26.282 hybrid contribution -0.641 1.165 0.062 1.331 sum -0.898 -23.727 8.490 25.216 Atomic orbital electron populations 1.21825 0.96006 1.01716 1.01653 1.21674 0.95892 0.95654 1.02166 1.21033 0.95714 0.96059 0.97459 0.92519 1.21957 0.98890 0.95850 0.97618 1.21340 1.00425 0.96386 0.97070 1.21897 0.88370 0.99844 0.96624 1.58836 1.21994 1.03815 1.43130 1.20825 1.00080 0.87809 0.92200 1.19630 0.94924 0.97502 1.02300 1.20857 0.98556 0.92624 0.96437 1.21215 0.98835 1.02110 1.03407 1.19669 0.94780 0.88501 0.89935 1.83513 1.46867 1.29810 1.55204 1.20698 0.99033 0.97567 1.30112 0.90263 1.25285 1.01586 0.93509 0.98534 1.69733 1.35521 1.09229 1.42094 0.85212 0.78875 0.77823 0.78783 1.19096 1.19230 1.18658 1.20520 0.98872 0.96546 1.05230 1.20883 0.97476 0.95288 0.92984 1.21003 1.01159 0.89626 0.93673 1.21532 0.95027 0.97115 1.00942 0.92893 0.92333 0.93115 0.91896 0.91439 0.91960 0.92431 0.91745 0.93165 0.94076 0.91487 0.88567 0.94155 0.85490 0.87692 0.90601 0.85533 0.83106 0.90232 0.96637 0.91714 0.90016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.63 71.98 0.69 -1.24 16 2 C -0.12 -1.47 5.15 30.59 0.16 -1.31 16 3 C -0.08 -1.29 1.71 -11.12 -0.02 -1.31 16 4 H 0.06 0.96 6.57 -2.39 -0.02 0.94 16 5 C -0.11 -1.87 4.46 31.27 0.14 -1.73 16 6 C -0.11 -2.56 5.41 30.16 0.16 -2.39 16 7 C 0.06 1.39 5.16 85.45 0.44 1.83 16 8 N -0.55 -11.92 3.96 -917.82 -3.64 -15.56 16 9 C 0.12 2.61 5.13 85.56 0.44 3.05 16 10 C -0.14 -4.23 4.88 -19.83 -0.10 -4.33 16 11 C -0.07 -2.29 7.71 22.25 0.17 -2.12 16 12 C -0.24 -10.49 9.17 22.39 0.21 -10.28 16 13 C 0.12 5.68 6.65 22.58 0.15 5.83 16 14 O -0.25 -13.57 8.59 -22.72 -0.20 -13.77 16 15 C -0.40 -23.76 9.95 67.92 0.68 -23.08 16 16 H 0.08 4.97 5.44 -2.91 -0.02 4.95 16 17 C 0.01 0.53 5.49 84.83 0.47 0.99 16 18 N -0.92 -55.88 13.96 21.61 0.30 -55.58 16 19 Si 0.97 45.98 28.62 68.60 1.96 47.95 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 22 H -0.26 -12.38 7.11 99.48 0.71 -11.67 16 23 C -0.19 -7.42 9.99 22.39 0.22 -7.19 16 24 C -0.05 -1.47 9.69 22.25 0.22 -1.26 16 25 C 0.07 1.27 4.93 88.07 0.43 1.71 16 26 C -0.11 -1.65 5.16 30.35 0.16 -1.50 16 27 H 0.05 0.70 6.83 -2.38 -0.02 0.69 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.78 8.08 -2.39 -0.02 0.77 16 31 H 0.07 0.76 7.95 -2.39 -0.02 0.74 16 32 H 0.06 1.05 7.94 -2.39 -0.02 1.03 16 33 H 0.06 1.00 7.38 -2.39 -0.02 0.99 16 34 H 0.06 1.58 7.26 -2.39 -0.02 1.57 16 35 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.04 0.90 6.66 -2.39 -0.02 0.89 16 37 H 0.07 1.85 4.46 -2.39 -0.01 1.84 16 38 H 0.10 1.78 7.78 -2.39 -0.02 1.76 16 39 H 0.04 0.87 8.08 -2.39 -0.02 0.85 16 40 H 0.13 3.82 7.55 -2.91 -0.02 3.79 16 41 H 0.11 5.16 5.64 -2.91 -0.02 5.14 16 42 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 43 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 44 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 45 H 0.08 1.19 7.80 -2.39 -0.02 1.17 16 46 H 0.02 0.27 7.54 -2.39 -0.02 0.25 16 47 H 0.06 1.16 7.11 -2.39 -0.02 1.14 16 48 H 0.08 0.99 7.61 -2.38 -0.02 0.97 16 Total: -1.00 -64.55 363.25 3.98 -60.57 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 0.93 Total: 20.73 kcal Atomic # 6 Polarization: -48.96 SS G_CDS: 4.62 Total: -44.34 kcal Atomic # 7 Polarization: -67.80 SS G_CDS: -3.34 Total: -71.14 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -0.20 Total: -13.77 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.96 Total: 47.95 kcal Total: -64.55 3.98 -60.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735310728.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.786 kcal (2) G-P(sol) polarization free energy of solvation -64.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds