Wall clock time and date at job start Tue Mar 31 2020 08:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47210 * 2 1 4 4 C 1.53003 * 109.47196 * 119.99608 * 2 1 3 5 5 H 1.09004 * 110.54109 * 302.61417 * 4 2 1 6 6 C 1.54887 * 110.48683 * 65.22484 * 4 2 1 7 7 C 1.54892 * 102.74841 * 156.62045 * 6 4 2 8 8 C 1.54264 * 104.19648 * 322.06014 * 7 6 4 9 9 C 1.53874 * 106.59954 * 23.60728 * 8 7 6 10 10 H 1.08997 * 110.03306 * 240.66898 * 9 8 7 11 11 N 1.46902 * 110.02890 * 119.28540 * 9 8 7 12 12 C 1.46901 * 110.99810 * 86.45842 * 11 9 8 13 13 C 1.50704 * 109.46965 * 180.02562 * 12 11 9 14 14 C 1.38291 * 119.93353 * 89.99552 * 13 12 11 15 15 C 1.38102 * 120.07287 * 179.97438 * 14 13 12 16 16 C 1.38885 * 119.92439 * 0.02562 * 15 14 13 17 17 O 1.35749 * 120.06407 * 179.97438 * 16 15 14 18 18 C 1.34824 * 117.00532 * 5.53097 * 17 16 15 19 19 H 1.08000 * 119.99528 * 354.94272 * 18 17 16 20 20 C 1.38650 * 120.00451 * 174.94170 * 18 17 16 21 21 N 1.31558 * 119.99986 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00266 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47246 * 180.02562 * 22 20 18 24 24 H 1.48494 * 109.47120 * 60.00042 * 22 20 18 25 25 H 1.48505 * 109.46916 * 299.99937 * 22 20 18 26 26 C 1.38878 * 119.86442 * 0.25280 * 16 15 14 27 27 C 1.38094 * 119.93045 * 359.49209 * 26 16 15 28 28 H 1.09000 * 109.47372 * 300.00124 * 1 2 3 29 29 H 1.08992 * 109.47173 * 60.00446 * 1 2 3 30 30 H 1.09003 * 109.47068 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47372 * 239.99349 * 2 1 3 32 32 H 1.09005 * 109.46413 * 299.99627 * 3 2 1 33 33 H 1.08997 * 109.47485 * 59.99418 * 3 2 1 34 34 H 1.08997 * 109.47220 * 180.02562 * 3 2 1 35 35 H 1.09002 * 110.75762 * 38.30982 * 6 4 2 36 36 H 1.08996 * 110.75720 * 274.93636 * 6 4 2 37 37 H 1.09006 * 110.48494 * 203.38271 * 7 6 4 38 38 H 1.09000 * 110.59672 * 80.79490 * 7 6 4 39 39 H 1.09012 * 110.03141 * 264.32610 * 8 7 6 40 40 H 1.08997 * 110.07555 * 142.91819 * 8 7 6 41 41 H 1.00899 * 110.99573 * 210.40500 * 11 9 8 42 42 H 1.08993 * 109.47591 * 59.99568 * 12 11 9 43 43 H 1.09002 * 109.46999 * 299.99333 * 12 11 9 44 44 H 1.07996 * 119.96908 * 359.95753 * 14 13 12 45 45 H 1.08001 * 120.03888 * 180.02562 * 15 14 13 46 46 H 0.96997 * 120.00087 * 0.02562 * 21 20 18 47 47 H 1.07997 * 120.03571 * 179.72341 * 26 16 15 48 48 H 1.08001 * 119.96884 * 180.23281 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6488 -0.2485 2.1503 6 6 1.6474 -2.2189 1.2089 7 6 2.6988 -2.8731 2.1394 8 6 4.0012 -2.1030 1.8390 9 6 3.5824 -0.7348 1.2730 10 1 3.9731 -0.6132 0.2628 11 7 4.0820 0.3420 2.1384 12 6 5.4520 0.7217 1.7687 13 6 5.9296 1.8257 2.6766 14 6 6.5806 1.5157 3.8567 15 6 7.0199 2.5251 4.6905 16 6 6.8069 3.8528 4.3430 17 8 7.2371 4.8472 5.1607 18 6 7.9639 4.4838 6.2366 19 1 8.1104 3.4375 6.4608 20 6 8.5233 5.4531 7.0551 21 7 8.3444 6.7276 6.7822 22 14 9.5308 4.9495 8.5452 23 1 10.0135 6.1644 9.2500 24 1 10.6934 4.1372 8.1052 25 1 8.6860 4.1468 9.4656 26 6 6.1478 4.1608 3.1600 27 6 5.7156 3.1469 2.3279 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.6766 1.9562 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.7301 -2.6127 0.1958 36 1 0.6408 -2.3652 1.6004 37 1 2.8162 -3.9298 1.8990 38 1 2.4152 -2.7498 3.1847 39 1 4.5946 -2.6457 1.1030 40 1 4.5759 -1.9680 2.7553 41 1 3.4662 1.1409 2.1135 42 1 5.4667 1.0685 0.7355 43 1 6.1087 -0.1422 1.8714 44 1 6.7453 0.4831 4.1267 45 1 7.5286 2.2823 5.6118 46 1 7.8209 6.9892 6.0086 47 1 5.9767 5.1922 2.8892 48 1 5.2063 3.3858 1.4060 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772961060.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:35:21 Heat of formation + Delta-G solvation = -37.308001 kcal Electronic energy + Delta-G solvation = -24557.913841 eV Core-core repulsion = 21190.747038 eV Total energy + Delta-G solvation = -3367.166803 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -39.65766 -39.02447 -36.92908 -34.90469 -34.12889 -32.24770 -30.22830 -29.85541 -28.12628 -27.41521 -26.63970 -25.05583 -23.80170 -21.92843 -21.56475 -20.73753 -20.00836 -19.67530 -18.35377 -16.85325 -16.50696 -15.75033 -15.15722 -14.80593 -14.71843 -14.31097 -14.04790 -13.90035 -13.67840 -13.58139 -13.42343 -13.34421 -13.14484 -12.77655 -12.73251 -12.41976 -11.97117 -11.93698 -11.49392 -11.31249 -11.22977 -11.10296 -11.01168 -10.88017 -10.74484 -10.70048 -10.61972 -10.54879 -10.39991 -10.28545 -10.23403 -9.38934 -8.75988 -8.32220 -8.20704 -7.23857 -6.76262 -4.05246 2.17493 2.25158 3.24619 3.29365 3.46065 4.12591 4.18008 4.33165 4.41271 4.54096 4.73574 4.81065 4.96278 5.03864 5.08136 5.19548 5.25465 5.31001 5.33916 5.37950 5.39683 5.43176 5.47430 5.53956 5.61897 5.64585 5.70550 5.75968 5.76700 5.79415 5.83992 5.92226 5.94239 5.97344 6.04473 6.11990 6.16434 6.22368 6.26671 6.38968 6.64338 6.85197 7.04807 7.20167 7.23899 7.37350 7.52811 7.58410 7.74888 8.41069 8.93070 9.62143 10.67818 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.024163 B = 0.002660 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.495660 B =10524.540201 C =11160.612437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.154 4.154 4 C -0.090 4.090 5 H 0.084 0.916 6 C -0.116 4.116 7 C -0.122 4.122 8 C -0.117 4.117 9 C 0.087 3.913 10 H 0.043 0.957 11 N -0.678 5.678 12 C 0.117 3.883 13 C -0.181 4.181 14 C -0.049 4.049 15 C -0.231 4.231 16 C 0.158 3.842 17 O -0.203 6.203 18 C -0.471 4.471 19 H 0.084 0.916 20 C 0.010 3.990 21 N -0.882 5.882 22 Si 1.095 2.905 23 H -0.273 1.273 24 H -0.281 1.281 25 H -0.281 1.281 26 C -0.196 4.196 27 C -0.069 4.069 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.076 0.924 41 H 0.341 0.659 42 H 0.026 0.974 43 H 0.069 0.931 44 H 0.108 0.892 45 H 0.127 0.873 46 H 0.282 0.718 47 H 0.114 0.886 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.344 -16.448 -12.927 24.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 C -0.211 4.211 4 C -0.109 4.109 5 H 0.102 0.898 6 C -0.154 4.154 7 C -0.159 4.159 8 C -0.156 4.156 9 C -0.023 4.023 10 H 0.061 0.939 11 N -0.311 5.311 12 C -0.011 4.011 13 C -0.182 4.182 14 C -0.068 4.068 15 C -0.250 4.250 16 C 0.105 3.895 17 O -0.108 6.108 18 C -0.547 4.547 19 H 0.101 0.899 20 C -0.196 4.196 21 N -0.514 5.514 22 Si 0.919 3.081 23 H -0.198 1.198 24 H -0.207 1.207 25 H -0.207 1.207 26 C -0.216 4.216 27 C -0.088 4.088 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.161 0.839 42 H 0.044 0.956 43 H 0.087 0.913 44 H 0.126 0.874 45 H 0.145 0.855 46 H 0.092 0.908 47 H 0.132 0.868 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.268 -15.975 -11.123 22.492 hybrid contribution -1.003 -0.223 -2.130 2.365 sum -12.271 -16.199 -13.253 24.261 Atomic orbital electron populations 1.21836 0.95161 1.01660 1.01699 1.21178 0.95799 0.96122 0.97746 1.21944 1.01078 0.96047 1.02023 1.22256 0.94506 0.95886 0.98221 0.89790 1.22494 0.98667 0.94616 0.99623 1.22306 0.95174 0.98668 0.99776 1.22212 0.97395 0.94482 1.01474 1.22200 0.93581 0.92347 0.94151 0.93897 1.60775 1.03325 1.12544 1.54455 1.20650 0.89681 0.96012 0.94734 1.19153 1.07599 0.93118 0.98348 1.20582 0.95469 0.97795 0.92920 1.21184 1.08792 0.92349 1.02703 1.19243 0.92500 0.88079 0.89680 1.83659 1.61536 1.31643 1.33914 1.22205 1.32889 0.96168 1.03471 0.89884 1.26536 0.98058 0.92704 1.02256 1.70574 1.36367 1.15885 1.28582 0.83114 0.75495 0.75904 0.73544 1.19787 1.20736 1.20711 1.20138 1.07374 0.99093 0.94962 1.20462 0.98455 0.91960 0.97886 0.92615 0.92930 0.92634 0.91449 0.92699 0.92275 0.92723 0.91694 0.91696 0.92150 0.91530 0.92575 0.90490 0.83879 0.95618 0.91254 0.87423 0.85523 0.90831 0.86840 0.87515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.03 37.16 0.34 -0.72 16 2 C -0.09 -0.72 2.31 -90.62 -0.21 -0.93 16 3 C -0.15 -1.33 8.01 37.16 0.30 -1.04 16 4 C -0.09 -0.80 1.92 -88.96 -0.17 -0.97 16 5 H 0.08 0.85 7.98 -51.93 -0.41 0.44 16 6 C -0.12 -0.92 5.45 -24.74 -0.13 -1.05 16 7 C -0.12 -1.05 6.83 -25.07 -0.17 -1.22 16 8 C -0.12 -1.17 6.48 -25.61 -0.17 -1.33 16 9 C 0.09 0.89 1.96 -66.59 -0.13 0.76 16 10 H 0.04 0.45 7.25 -51.93 -0.38 0.07 16 11 N -0.68 -8.40 5.92 -106.81 -0.63 -9.03 16 12 C 0.12 1.59 5.63 -4.97 -0.03 1.56 16 13 C -0.18 -3.08 5.40 -104.57 -0.56 -3.64 16 14 C -0.05 -0.92 9.69 -39.61 -0.38 -1.30 16 15 C -0.23 -5.15 9.17 -39.39 -0.36 -5.51 16 16 C 0.16 3.87 6.65 -39.10 -0.26 3.61 16 17 O -0.20 -5.80 9.16 0.07 0.00 -5.80 16 18 C -0.47 -13.43 9.49 30.88 0.29 -13.13 16 19 H 0.08 2.23 5.20 -52.49 -0.27 1.96 16 20 C 0.01 0.27 5.49 -17.52 -0.10 0.18 16 21 N -0.88 -26.58 13.70 55.48 0.76 -25.82 16 22 Si 1.10 23.90 29.92 -169.99 -5.09 18.82 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 24 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 25 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 26 C -0.20 -4.15 9.99 -39.40 -0.39 -4.54 16 27 C -0.07 -1.22 9.69 -39.61 -0.38 -1.60 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.37 7.34 -51.93 -0.38 -0.01 16 31 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.53 8.05 -51.93 -0.42 0.11 16 34 H 0.05 0.52 6.51 -51.93 -0.34 0.18 16 35 H 0.06 0.48 8.04 -51.93 -0.42 0.06 16 36 H 0.06 0.48 8.00 -51.93 -0.42 0.06 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 40 H 0.08 0.89 7.92 -51.93 -0.41 0.48 16 41 H 0.34 4.27 6.79 -39.29 -0.27 4.01 16 42 H 0.03 0.33 8.01 -51.93 -0.42 -0.09 16 43 H 0.07 0.92 8.04 -51.93 -0.42 0.50 16 44 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 45 H 0.13 2.87 5.64 -52.49 -0.30 2.58 16 46 H 0.28 8.68 7.97 -40.82 -0.33 8.35 16 47 H 0.11 2.29 8.06 -52.49 -0.42 1.87 16 48 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 LS Contribution 377.09 15.07 5.68 5.68 Total: -1.00 -29.83 377.09 -9.99 -39.82 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -8.19 Total: 7.22 kcal Atomic # 6 Polarization: -28.36 SS G_CDS: -2.53 Total: -30.89 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.13 Total: -34.85 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: 0.00 Total: -5.80 kcal Atomic # 14 Polarization: 23.90 SS G_CDS: -5.09 Total: 18.82 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.83 -9.99 -39.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772961060.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.509 kcal (2) G-P(sol) polarization free energy of solvation -29.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds