Wall clock time and date at job start Tue Mar 31 2020 08:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47210 * 2 1 4 4 C 1.53003 * 109.47196 * 119.99608 * 2 1 3 5 5 H 1.09004 * 110.54109 * 302.61417 * 4 2 1 6 6 C 1.54887 * 110.48683 * 65.22484 * 4 2 1 7 7 C 1.54892 * 102.74841 * 156.62045 * 6 4 2 8 8 C 1.54264 * 104.19648 * 322.06014 * 7 6 4 9 9 C 1.53874 * 106.59954 * 23.60728 * 8 7 6 10 10 H 1.08997 * 110.03306 * 240.66898 * 9 8 7 11 11 N 1.46902 * 110.02890 * 119.28540 * 9 8 7 12 12 C 1.46901 * 110.99810 * 86.45842 * 11 9 8 13 13 C 1.50704 * 109.46965 * 180.02562 * 12 11 9 14 14 C 1.38291 * 119.93353 * 89.99552 * 13 12 11 15 15 C 1.38102 * 120.07287 * 179.97438 * 14 13 12 16 16 C 1.38885 * 119.92439 * 0.02562 * 15 14 13 17 17 O 1.35749 * 120.06407 * 179.97438 * 16 15 14 18 18 C 1.34824 * 117.00532 * 5.53097 * 17 16 15 19 19 H 1.08000 * 119.99528 * 354.94272 * 18 17 16 20 20 C 1.38650 * 120.00451 * 174.94170 * 18 17 16 21 21 N 1.31558 * 119.99986 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00266 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47246 * 180.02562 * 22 20 18 24 24 H 1.48494 * 109.47120 * 60.00042 * 22 20 18 25 25 H 1.48505 * 109.46916 * 299.99937 * 22 20 18 26 26 C 1.38878 * 119.86442 * 0.25280 * 16 15 14 27 27 C 1.38094 * 119.93045 * 359.49209 * 26 16 15 28 28 H 1.09000 * 109.47372 * 300.00124 * 1 2 3 29 29 H 1.08992 * 109.47173 * 60.00446 * 1 2 3 30 30 H 1.09003 * 109.47068 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47372 * 239.99349 * 2 1 3 32 32 H 1.09005 * 109.46413 * 299.99627 * 3 2 1 33 33 H 1.08997 * 109.47485 * 59.99418 * 3 2 1 34 34 H 1.08997 * 109.47220 * 180.02562 * 3 2 1 35 35 H 1.09002 * 110.75762 * 38.30982 * 6 4 2 36 36 H 1.08996 * 110.75720 * 274.93636 * 6 4 2 37 37 H 1.09006 * 110.48494 * 203.38271 * 7 6 4 38 38 H 1.09000 * 110.59672 * 80.79490 * 7 6 4 39 39 H 1.09012 * 110.03141 * 264.32610 * 8 7 6 40 40 H 1.08997 * 110.07555 * 142.91819 * 8 7 6 41 41 H 1.00899 * 110.99573 * 210.40500 * 11 9 8 42 42 H 1.08993 * 109.47591 * 59.99568 * 12 11 9 43 43 H 1.09002 * 109.46999 * 299.99333 * 12 11 9 44 44 H 1.07996 * 119.96908 * 359.95753 * 14 13 12 45 45 H 1.08001 * 120.03888 * 180.02562 * 15 14 13 46 46 H 0.96997 * 120.00087 * 0.02562 * 21 20 18 47 47 H 1.07997 * 120.03571 * 179.72341 * 26 16 15 48 48 H 1.08001 * 119.96884 * 180.23281 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6488 -0.2485 2.1503 6 6 1.6474 -2.2189 1.2089 7 6 2.6988 -2.8731 2.1394 8 6 4.0012 -2.1030 1.8390 9 6 3.5824 -0.7348 1.2730 10 1 3.9731 -0.6132 0.2628 11 7 4.0820 0.3420 2.1384 12 6 5.4520 0.7217 1.7687 13 6 5.9296 1.8257 2.6766 14 6 6.5806 1.5157 3.8567 15 6 7.0199 2.5251 4.6905 16 6 6.8069 3.8528 4.3430 17 8 7.2371 4.8472 5.1607 18 6 7.9639 4.4838 6.2366 19 1 8.1104 3.4375 6.4608 20 6 8.5233 5.4531 7.0551 21 7 8.3444 6.7276 6.7822 22 14 9.5308 4.9495 8.5452 23 1 10.0135 6.1644 9.2500 24 1 10.6934 4.1372 8.1052 25 1 8.6860 4.1468 9.4656 26 6 6.1478 4.1608 3.1600 27 6 5.7156 3.1469 2.3279 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.6766 1.9562 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.7301 -2.6127 0.1958 36 1 0.6408 -2.3652 1.6004 37 1 2.8162 -3.9298 1.8990 38 1 2.4152 -2.7498 3.1847 39 1 4.5946 -2.6457 1.1030 40 1 4.5759 -1.9680 2.7553 41 1 3.4662 1.1409 2.1135 42 1 5.4667 1.0685 0.7355 43 1 6.1087 -0.1422 1.8714 44 1 6.7453 0.4831 4.1267 45 1 7.5286 2.2823 5.6118 46 1 7.8209 6.9892 6.0086 47 1 5.9767 5.1922 2.8892 48 1 5.2063 3.3858 1.4060 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772961060.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:35:18 Heat of formation + Delta-G solvation = -53.278560 kcal Electronic energy + Delta-G solvation = -24558.606376 eV Core-core repulsion = 21190.747038 eV Total energy + Delta-G solvation = -3367.859338 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 2.64 seconds Orbital eigenvalues (eV) -40.95618 -40.28046 -38.59722 -35.83023 -35.04215 -34.23078 -31.87336 -31.24612 -28.83576 -28.24126 -27.54664 -26.93829 -25.10880 -23.61889 -22.29327 -22.16055 -20.84303 -20.45516 -20.22786 -18.71217 -17.46301 -16.95893 -16.52445 -16.03575 -15.81291 -15.61942 -15.48697 -15.32633 -15.09831 -15.00426 -14.62488 -14.31093 -14.17310 -13.95154 -13.45549 -13.28647 -13.10319 -12.96800 -12.82683 -12.73102 -12.40245 -12.23811 -12.12216 -11.99302 -11.93934 -11.86469 -11.76157 -11.51613 -11.37685 -11.27650 -11.20533 -11.16446 -10.75523 -9.85015 -9.30706 -8.99668 -8.93747 -6.25135 0.52857 0.60795 1.48047 1.60497 1.78321 2.35350 2.76910 3.08082 3.32517 3.44632 3.62656 3.72218 3.91581 3.99549 4.03880 4.13113 4.17724 4.29679 4.36547 4.42557 4.53313 4.55318 4.66444 4.67669 4.70286 4.75287 4.78845 4.80576 4.91059 4.93999 4.99024 5.03039 5.11502 5.12967 5.20524 5.21678 5.22963 5.25422 5.30714 5.37839 5.45234 5.46534 5.51427 5.60784 5.70576 5.77172 6.04377 6.23682 6.30391 6.53147 6.85843 7.62056 8.49899 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.024163 B = 0.002660 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.495660 B =10524.540201 C =11160.612437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.153 4.153 4 C -0.086 4.086 5 H 0.070 0.930 6 C -0.111 4.111 7 C -0.121 4.121 8 C -0.119 4.119 9 C 0.089 3.911 10 H 0.048 0.952 11 N -0.686 5.686 12 C 0.122 3.878 13 C -0.152 4.152 14 C -0.050 4.050 15 C -0.242 4.242 16 C 0.116 3.884 17 O -0.253 6.253 18 C -0.488 4.488 19 H 0.090 0.910 20 C -0.045 4.045 21 N -0.918 5.918 22 Si 1.144 2.856 23 H -0.273 1.273 24 H -0.260 1.260 25 H -0.260 1.260 26 C -0.204 4.204 27 C -0.060 4.060 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.341 0.659 42 H 0.044 0.956 43 H 0.078 0.922 44 H 0.135 0.865 45 H 0.115 0.885 46 H 0.260 0.740 47 H 0.114 0.886 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.427 -19.589 -14.834 28.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.104 4.104 3 C -0.211 4.211 4 C -0.105 4.105 5 H 0.088 0.912 6 C -0.149 4.149 7 C -0.158 4.158 8 C -0.157 4.157 9 C -0.020 4.020 10 H 0.066 0.934 11 N -0.319 5.319 12 C -0.006 4.006 13 C -0.153 4.153 14 C -0.069 4.069 15 C -0.261 4.261 16 C 0.066 3.934 17 O -0.161 6.161 18 C -0.563 4.563 19 H 0.107 0.893 20 C -0.241 4.241 21 N -0.553 5.553 22 Si 0.960 3.040 23 H -0.197 1.197 24 H -0.185 1.185 25 H -0.185 1.185 26 C -0.223 4.223 27 C -0.078 4.078 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.161 0.839 42 H 0.062 0.938 43 H 0.097 0.903 44 H 0.152 0.848 45 H 0.133 0.867 46 H 0.068 0.932 47 H 0.132 0.868 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -12.386 -19.172 -13.080 26.307 hybrid contribution -0.858 0.504 -1.838 2.091 sum -13.244 -18.668 -14.919 27.321 Atomic orbital electron populations 1.21819 0.94532 1.02165 1.01683 1.21147 0.96290 0.95587 0.97403 1.21939 1.00594 0.96533 1.01985 1.22200 0.93510 0.96688 0.98070 0.91170 1.22482 0.98769 0.93605 1.00037 1.22297 0.94742 0.99331 0.99467 1.22220 0.97937 0.94643 1.00881 1.22246 0.94403 0.91533 0.93835 0.93405 1.60728 1.02700 1.13018 1.55461 1.20630 0.90542 0.94904 0.94530 1.19666 1.04094 0.94145 0.97406 1.20898 0.94897 0.98221 0.92876 1.21270 1.09249 0.92453 1.03102 1.19824 0.94183 0.88557 0.90844 1.83638 1.63840 1.33427 1.35177 1.22577 1.33080 0.96704 1.03980 0.89255 1.28389 0.98618 0.92105 1.04938 1.70712 1.38660 1.17198 1.28711 0.82599 0.74929 0.76137 0.70350 1.19728 1.18467 1.18483 1.20437 1.06977 1.00401 0.94474 1.20883 0.97212 0.91330 0.98386 0.93182 0.92434 0.91892 0.90898 0.92121 0.92989 0.93351 0.90668 0.91014 0.90967 0.92453 0.91649 0.92207 0.83936 0.93757 0.90334 0.84757 0.86743 0.93182 0.86770 0.83552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.03 71.98 0.65 -1.06 16 2 C -0.09 -1.13 2.31 -10.79 -0.02 -1.15 16 3 C -0.15 -2.25 8.01 71.98 0.58 -1.67 16 4 C -0.09 -1.29 1.92 -9.72 -0.02 -1.31 16 5 H 0.07 1.28 7.98 -2.38 -0.02 1.26 16 6 C -0.11 -1.42 5.45 31.89 0.17 -1.24 16 7 C -0.12 -1.76 6.83 31.67 0.22 -1.54 16 8 C -0.12 -2.02 6.48 31.32 0.20 -1.82 16 9 C 0.09 1.54 1.96 45.64 0.09 1.63 16 10 H 0.05 0.81 7.25 -2.39 -0.02 0.80 16 11 N -0.69 -14.84 5.92 -491.83 -2.91 -17.75 16 12 C 0.12 2.82 5.63 85.56 0.48 3.30 16 13 C -0.15 -4.72 5.40 -19.83 -0.11 -4.83 16 14 C -0.05 -1.80 9.69 22.25 0.22 -1.59 16 15 C -0.24 -10.90 9.17 22.39 0.21 -10.70 16 16 C 0.12 5.85 6.65 22.58 0.15 6.00 16 17 O -0.25 -15.35 9.16 -22.68 -0.21 -15.56 16 18 C -0.49 -29.16 9.49 67.92 0.64 -28.51 16 19 H 0.09 5.00 5.20 -2.91 -0.02 4.99 16 20 C -0.04 -2.61 5.49 84.83 0.47 -2.14 16 21 N -0.92 -58.36 13.70 21.61 0.30 -58.06 16 22 Si 1.14 48.94 29.92 68.60 2.05 50.99 16 23 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 24 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 25 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 26 C -0.20 -8.63 9.99 22.39 0.22 -8.41 16 27 C -0.06 -1.96 9.69 22.25 0.22 -1.75 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.65 7.34 -2.39 -0.02 0.63 16 31 H 0.07 0.91 8.12 -2.39 -0.02 0.89 16 32 H 0.06 0.81 8.14 -2.38 -0.02 0.80 16 33 H 0.05 0.83 8.05 -2.39 -0.02 0.81 16 34 H 0.05 0.76 6.51 -2.39 -0.02 0.75 16 35 H 0.07 0.83 8.04 -2.39 -0.02 0.82 16 36 H 0.07 0.84 8.00 -2.39 -0.02 0.82 16 37 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.06 1.23 7.92 -2.39 -0.02 1.22 16 41 H 0.34 7.53 6.79 -89.69 -0.61 6.92 16 42 H 0.04 0.91 8.01 -2.39 -0.02 0.89 16 43 H 0.08 1.75 8.04 -2.39 -0.02 1.73 16 44 H 0.13 4.08 8.06 -2.91 -0.02 4.06 16 45 H 0.11 5.36 5.64 -2.91 -0.02 5.34 16 46 H 0.26 17.20 7.97 -92.71 -0.74 16.46 16 47 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 48 H 0.15 3.70 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -69.15 377.09 3.94 -65.21 By element: Atomic # 1 Polarization: 31.60 SS G_CDS: 0.35 Total: 31.95 kcal Atomic # 6 Polarization: -61.14 SS G_CDS: 4.36 Total: -56.78 kcal Atomic # 7 Polarization: -73.20 SS G_CDS: -2.61 Total: -75.81 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.21 Total: -15.56 kcal Atomic # 14 Polarization: 48.94 SS G_CDS: 2.05 Total: 50.99 kcal Total: -69.15 3.94 -65.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772961060.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.929 kcal (2) G-P(sol) polarization free energy of solvation -69.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.64 seconds