Wall clock time and date at job start Tue Mar 31 2020 09:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46599 * 2 1 4 4 C 1.52995 * 109.47381 * 120.00005 * 2 1 3 5 5 N 1.46501 * 109.47096 * 175.00312 * 4 2 1 6 6 C 1.34774 * 120.00335 * 89.99799 * 5 4 2 7 7 O 1.21286 * 119.99364 * 0.02562 * 6 5 4 8 8 C 1.50690 * 120.00424 * 179.97438 * 6 5 4 9 9 C 1.50699 * 109.47281 * 180.02562 * 8 6 5 10 10 C 1.37640 * 120.12931 * 264.99976 * 9 8 6 11 11 C 1.38608 * 120.24877 * 179.97438 * 10 9 8 12 12 C 1.38654 * 120.50357 * 0.02562 * 11 10 9 13 13 C 1.37601 * 120.24831 * 0.02629 * 12 11 10 14 14 C 1.40696 * 120.12760 * 84.73129 * 9 8 6 15 15 C 1.41398 * 120.24431 * 359.97438 * 14 9 8 16 16 H 1.08003 * 120.00339 * 333.91158 * 15 14 9 17 17 C 1.39952 * 119.99773 * 153.90103 * 15 14 9 18 18 N 1.30816 * 119.99844 * 343.71763 * 17 15 14 19 19 Si 1.86796 * 119.99737 * 163.71668 * 17 15 14 20 20 H 1.48500 * 109.47359 * 90.00328 * 19 17 15 21 21 H 1.48502 * 109.46856 * 210.00291 * 19 17 15 22 22 H 1.48498 * 109.47103 * 330.00065 * 19 17 15 23 23 C 1.46503 * 119.99754 * 269.99954 * 5 4 2 24 24 C 1.52998 * 109.47355 * 299.99855 * 23 5 4 25 25 C 1.53005 * 109.47176 * 60.00368 * 23 5 4 26 26 H 1.09000 * 109.47418 * 299.99419 * 1 2 3 27 27 H 1.08999 * 109.47425 * 60.00166 * 1 2 3 28 28 H 1.09013 * 109.46765 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46899 * 240.00490 * 2 1 3 30 30 H 1.08998 * 109.47494 * 60.00261 * 3 2 1 31 31 H 1.09004 * 109.47248 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47973 * 300.00139 * 3 2 1 33 33 H 1.09000 * 109.46979 * 55.00552 * 4 2 1 34 34 H 1.08993 * 109.47162 * 295.00127 * 4 2 1 35 35 H 1.09002 * 109.46985 * 300.00511 * 8 6 5 36 36 H 1.08999 * 109.47236 * 60.00309 * 8 6 5 37 37 H 1.08007 * 119.87242 * 0.02562 * 10 9 8 38 38 H 1.08002 * 119.74457 * 180.02562 * 11 10 9 39 39 H 1.07998 * 119.87498 * 179.97438 * 12 11 10 40 40 H 1.08001 * 120.12872 * 179.97438 * 13 12 11 41 41 H 0.97004 * 120.00045 * 179.97438 * 18 17 15 42 42 H 1.09004 * 109.46741 * 179.97438 * 23 5 4 43 43 H 1.09005 * 109.46734 * 60.00352 * 24 23 5 44 44 H 1.09001 * 109.47162 * 180.02562 * 24 23 5 45 45 H 1.08995 * 109.47339 * 300.00430 * 24 23 5 46 46 H 1.09003 * 109.47213 * 59.99533 * 25 23 5 47 47 H 1.09001 * 109.47176 * 179.97438 * 25 23 5 48 48 H 1.09004 * 109.46813 * 299.99377 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8262 1.1905 6 6 4.2676 0.1493 1.7154 7 8 3.7494 1.1140 2.2369 8 6 5.7694 0.0410 1.6556 9 6 6.3868 1.2512 2.3078 10 6 6.7634 2.3317 1.5429 11 6 7.3310 3.4463 2.1403 12 6 7.5264 3.4865 3.5124 13 6 7.1585 2.4175 4.2967 14 6 6.5751 1.2832 3.7018 15 6 6.1864 0.1817 4.4985 16 1 5.3994 -0.4772 4.1621 17 6 6.8215 -0.0551 5.7229 18 7 7.9634 0.5244 5.9902 19 14 6.0384 -1.1983 6.9755 20 1 6.5132 -2.5862 6.7439 21 1 6.4185 -0.7672 8.3448 22 1 4.5610 -1.1505 6.8337 23 6 4.1259 -1.9918 0.5611 24 6 3.6932 -3.2621 1.2960 25 6 3.6901 -2.0761 -0.9032 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1299 1.4426 -0.0005 32 1 1.6765 1.9565 -0.8900 33 1 1.6055 -1.7198 1.2950 34 1 1.7517 -0.1583 2.1369 35 1 6.0901 -0.8582 2.1817 36 1 6.0886 -0.0136 0.6148 37 1 6.6154 2.3113 0.4732 38 1 7.6232 4.2897 1.5323 39 1 7.9699 4.3600 3.9672 40 1 7.3120 2.4508 5.3652 41 1 8.4035 0.3606 6.8390 42 1 5.2103 -1.8937 0.6119 43 1 2.6088 -3.3599 1.2447 44 1 4.1592 -4.1292 0.8279 45 1 4.0037 -3.2020 2.3391 46 1 3.9984 -1.1711 -1.4267 47 1 4.1561 -2.9431 -1.3716 48 1 2.6057 -2.1741 -0.9544 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776806439.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:24:20 Heat of formation + Delta-G solvation = -36.256095 kcal Electronic energy + Delta-G solvation = -26207.699398 eV Core-core repulsion = 22840.578209 eV Total energy + Delta-G solvation = -3367.121189 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.89263 -37.61036 -36.29590 -34.99698 -33.57107 -31.60173 -31.09137 -29.40440 -27.58235 -27.27879 -26.92263 -25.60744 -24.65055 -21.65383 -20.88222 -20.43785 -19.65409 -18.33640 -17.10646 -16.75173 -15.70751 -15.33923 -15.08819 -14.61843 -14.35718 -14.03268 -13.80166 -13.57317 -13.35361 -13.28866 -12.86662 -12.67307 -12.51937 -12.30100 -12.14154 -11.88754 -11.75544 -11.53362 -11.51939 -11.43342 -11.14975 -11.01896 -10.96566 -10.87575 -10.82471 -10.65083 -10.59555 -10.35447 -10.30187 -9.43055 -9.30639 -9.10969 -8.97754 -8.23385 -7.25485 -7.23059 -6.68832 -4.28801 2.82700 3.01535 3.09029 3.14607 3.31044 3.41169 3.48287 3.97354 4.70624 4.80879 4.92227 4.99468 5.15575 5.17282 5.22173 5.36454 5.53871 5.58892 5.68532 5.70106 5.74930 5.82864 5.86714 5.89428 5.97077 6.02346 6.03697 6.09702 6.12600 6.21000 6.24012 6.28150 6.33319 6.46918 6.48382 6.56165 6.67632 6.84884 7.01321 7.13683 7.35047 7.47822 7.69398 7.90320 7.99678 8.13220 8.18476 8.37153 8.70312 8.95226 8.97522 9.07292 10.25293 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.012837 B = 0.005448 C = 0.004519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.604922 B = 5138.141751 C = 6195.060600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C -0.137 4.137 4 C 0.120 3.880 5 N -0.619 5.619 6 C 0.518 3.482 7 O -0.514 6.514 8 C -0.070 4.070 9 C -0.179 4.179 10 C -0.081 4.081 11 C -0.239 4.239 12 C -0.108 4.108 13 C -0.159 4.159 14 C 0.129 3.871 15 C -0.455 4.455 16 H 0.073 0.927 17 C 0.077 3.923 18 N -0.796 5.796 19 Si 0.900 3.100 20 H -0.270 1.270 21 H -0.276 1.276 22 H -0.262 1.262 23 C 0.129 3.871 24 C -0.164 4.164 25 C -0.163 4.163 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.040 0.960 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.116 0.884 41 H 0.279 0.721 42 H 0.096 0.904 43 H 0.056 0.944 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.058 0.942 47 H 0.062 0.938 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.653 -7.436 -10.171 15.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.136 4.136 3 C -0.194 4.194 4 C -0.003 4.003 5 N -0.355 5.355 6 C 0.307 3.693 7 O -0.387 6.387 8 C -0.110 4.110 9 C -0.181 4.181 10 C -0.100 4.100 11 C -0.258 4.258 12 C -0.126 4.126 13 C -0.178 4.178 14 C 0.127 3.873 15 C -0.485 4.485 16 H 0.091 0.909 17 C -0.140 4.140 18 N -0.422 5.422 19 Si 0.725 3.275 20 H -0.196 1.196 21 H -0.201 1.201 22 H -0.186 1.186 23 C 0.025 3.975 24 C -0.222 4.222 25 C -0.221 4.221 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.112 0.888 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.134 0.866 41 H 0.090 0.910 42 H 0.114 0.886 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.081 0.919 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.734 -6.886 -9.673 14.740 hybrid contribution -0.278 -0.573 0.579 0.861 sum -9.012 -7.459 -9.093 14.817 Atomic orbital electron populations 1.21781 0.95349 1.01217 1.01838 1.21693 0.95263 0.97656 0.98971 1.21775 1.01750 0.94993 1.00892 1.21381 0.80589 0.99906 0.98379 1.48155 1.05777 1.21555 1.60001 1.21133 0.89993 0.81518 0.76646 1.90675 1.74871 1.30947 1.42231 1.20296 0.90123 1.00371 1.00203 1.19077 1.10084 0.95262 0.93648 1.20279 0.99172 0.93863 0.96662 1.20288 1.11984 0.98849 0.94727 1.20665 1.00574 0.97513 0.93873 1.21288 1.04315 0.92860 0.99379 1.17322 0.88239 0.91837 0.89892 1.19447 1.17075 1.10121 1.01809 0.90879 1.25861 0.93688 0.95879 0.98552 1.69820 1.12229 1.36942 1.23196 0.86440 0.80939 0.80349 0.79788 1.19573 1.20111 1.18577 1.21119 0.98812 0.85593 0.91998 1.22175 1.01631 0.96966 1.01438 1.22289 1.01865 1.02017 0.95955 0.92581 0.92817 0.93042 0.90876 0.92249 0.92402 0.94084 0.91394 0.90183 0.88828 0.90968 0.89925 0.89772 0.89672 0.86586 0.91041 0.88615 0.92505 0.91713 0.91825 0.92242 0.91883 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.19 37.16 0.34 -1.12 16 2 C -0.12 -1.42 2.88 -90.62 -0.26 -1.68 16 3 C -0.14 -2.02 7.94 37.16 0.29 -1.73 16 4 C 0.12 1.65 4.42 -4.04 -0.02 1.63 16 5 N -0.62 -9.34 2.29 -166.11 -0.38 -9.72 16 6 C 0.52 10.12 5.87 -10.99 -0.06 10.06 16 7 O -0.51 -12.07 13.83 5.55 0.08 -12.00 16 8 C -0.07 -1.40 3.49 -29.04 -0.10 -1.50 16 9 C -0.18 -4.35 4.43 -103.91 -0.46 -4.81 16 10 C -0.08 -1.91 9.66 -39.66 -0.38 -2.29 16 11 C -0.24 -5.66 10.05 -39.29 -0.39 -6.05 16 12 C -0.11 -2.67 10.02 -39.66 -0.40 -3.07 16 13 C -0.16 -4.31 8.69 -38.87 -0.34 -4.65 16 14 C 0.13 3.50 5.56 -106.82 -0.59 2.90 16 15 C -0.45 -12.07 8.14 -37.74 -0.31 -12.38 16 16 H 0.07 1.90 6.67 -52.48 -0.35 1.55 16 17 C 0.08 1.96 5.16 -17.34 -0.09 1.87 16 18 N -0.80 -20.74 10.95 55.55 0.61 -20.13 16 19 Si 0.90 19.08 29.59 -169.99 -5.03 14.05 16 20 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 21 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 23 C 0.13 1.53 3.17 -67.93 -0.22 1.32 16 24 C -0.16 -1.73 9.17 37.16 0.34 -1.39 16 25 C -0.16 -1.57 8.07 37.16 0.30 -1.27 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 29 H 0.07 0.83 5.35 -51.93 -0.28 0.55 16 30 H 0.06 0.98 8.00 -51.93 -0.42 0.56 16 31 H 0.06 1.00 6.06 -51.93 -0.31 0.68 16 32 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.78 6.43 -51.93 -0.33 0.44 16 34 H 0.08 1.30 7.42 -51.93 -0.39 0.91 16 35 H 0.09 1.86 6.72 -51.93 -0.35 1.51 16 36 H 0.07 1.23 7.70 -51.93 -0.40 0.83 16 37 H 0.08 1.71 8.06 -52.48 -0.42 1.29 16 38 H 0.08 1.77 8.06 -52.49 -0.42 1.35 16 39 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 40 H 0.12 3.23 6.20 -52.49 -0.33 2.91 16 41 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 42 H 0.10 1.17 5.77 -51.93 -0.30 0.87 16 43 H 0.06 0.56 6.66 -51.93 -0.35 0.21 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 47 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.06 0.56 6.26 -51.93 -0.33 0.23 16 LS Contribution 370.69 15.07 5.59 5.59 Total: -1.00 -29.88 370.69 -9.39 -39.27 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -7.90 Total: 7.13 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: -2.35 Total: -24.17 kcal Atomic # 7 Polarization: -30.08 SS G_CDS: 0.23 Total: -29.86 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.08 Total: -12.00 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.88 -9.39 -39.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776806439.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.011 kcal (2) G-P(sol) polarization free energy of solvation -29.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds