Wall clock time and date at job start Tue Mar 31 2020 09:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46599 * 2 1 4 4 C 1.52995 * 109.47381 * 120.00005 * 2 1 3 5 5 N 1.46501 * 109.47096 * 175.00312 * 4 2 1 6 6 C 1.34774 * 120.00335 * 89.99799 * 5 4 2 7 7 O 1.21286 * 119.99364 * 0.02562 * 6 5 4 8 8 C 1.50690 * 120.00424 * 179.97438 * 6 5 4 9 9 C 1.50699 * 109.47281 * 180.02562 * 8 6 5 10 10 C 1.37640 * 120.12931 * 264.99976 * 9 8 6 11 11 C 1.38608 * 120.24877 * 179.97438 * 10 9 8 12 12 C 1.38654 * 120.50357 * 0.02562 * 11 10 9 13 13 C 1.37601 * 120.24831 * 0.02629 * 12 11 10 14 14 C 1.40696 * 120.12760 * 84.73129 * 9 8 6 15 15 C 1.41398 * 120.24431 * 359.97438 * 14 9 8 16 16 H 1.08003 * 120.00339 * 333.91158 * 15 14 9 17 17 C 1.39952 * 119.99773 * 153.90103 * 15 14 9 18 18 N 1.30816 * 119.99844 * 343.71763 * 17 15 14 19 19 Si 1.86796 * 119.99737 * 163.71668 * 17 15 14 20 20 H 1.48500 * 109.47359 * 90.00328 * 19 17 15 21 21 H 1.48502 * 109.46856 * 210.00291 * 19 17 15 22 22 H 1.48498 * 109.47103 * 330.00065 * 19 17 15 23 23 C 1.46503 * 119.99754 * 269.99954 * 5 4 2 24 24 C 1.52998 * 109.47355 * 299.99855 * 23 5 4 25 25 C 1.53005 * 109.47176 * 60.00368 * 23 5 4 26 26 H 1.09000 * 109.47418 * 299.99419 * 1 2 3 27 27 H 1.08999 * 109.47425 * 60.00166 * 1 2 3 28 28 H 1.09013 * 109.46765 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46899 * 240.00490 * 2 1 3 30 30 H 1.08998 * 109.47494 * 60.00261 * 3 2 1 31 31 H 1.09004 * 109.47248 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47973 * 300.00139 * 3 2 1 33 33 H 1.09000 * 109.46979 * 55.00552 * 4 2 1 34 34 H 1.08993 * 109.47162 * 295.00127 * 4 2 1 35 35 H 1.09002 * 109.46985 * 300.00511 * 8 6 5 36 36 H 1.08999 * 109.47236 * 60.00309 * 8 6 5 37 37 H 1.08007 * 119.87242 * 0.02562 * 10 9 8 38 38 H 1.08002 * 119.74457 * 180.02562 * 11 10 9 39 39 H 1.07998 * 119.87498 * 179.97438 * 12 11 10 40 40 H 1.08001 * 120.12872 * 179.97438 * 13 12 11 41 41 H 0.97004 * 120.00045 * 179.97438 * 18 17 15 42 42 H 1.09004 * 109.46741 * 179.97438 * 23 5 4 43 43 H 1.09005 * 109.46734 * 60.00352 * 24 23 5 44 44 H 1.09001 * 109.47162 * 180.02562 * 24 23 5 45 45 H 1.08995 * 109.47339 * 300.00430 * 24 23 5 46 46 H 1.09003 * 109.47213 * 59.99533 * 25 23 5 47 47 H 1.09001 * 109.47176 * 179.97438 * 25 23 5 48 48 H 1.09004 * 109.46813 * 299.99377 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8262 1.1905 6 6 4.2676 0.1493 1.7154 7 8 3.7494 1.1140 2.2369 8 6 5.7694 0.0410 1.6556 9 6 6.3868 1.2512 2.3078 10 6 6.7634 2.3317 1.5429 11 6 7.3310 3.4463 2.1403 12 6 7.5264 3.4865 3.5124 13 6 7.1585 2.4175 4.2967 14 6 6.5751 1.2832 3.7018 15 6 6.1864 0.1817 4.4985 16 1 5.3994 -0.4772 4.1621 17 6 6.8215 -0.0551 5.7229 18 7 7.9634 0.5244 5.9902 19 14 6.0384 -1.1983 6.9755 20 1 6.5132 -2.5862 6.7439 21 1 6.4185 -0.7672 8.3448 22 1 4.5610 -1.1505 6.8337 23 6 4.1259 -1.9918 0.5611 24 6 3.6932 -3.2621 1.2960 25 6 3.6901 -2.0761 -0.9032 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1299 1.4426 -0.0005 32 1 1.6765 1.9565 -0.8900 33 1 1.6055 -1.7198 1.2950 34 1 1.7517 -0.1583 2.1369 35 1 6.0901 -0.8582 2.1817 36 1 6.0886 -0.0136 0.6148 37 1 6.6154 2.3113 0.4732 38 1 7.6232 4.2897 1.5323 39 1 7.9699 4.3600 3.9672 40 1 7.3120 2.4508 5.3652 41 1 8.4035 0.3606 6.8390 42 1 5.2103 -1.8937 0.6119 43 1 2.6088 -3.3599 1.2447 44 1 4.1592 -4.1292 0.8279 45 1 4.0037 -3.2020 2.3391 46 1 3.9984 -1.1711 -1.4267 47 1 4.1561 -2.9431 -1.3716 48 1 2.6057 -2.1741 -0.9544 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776806439.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:24:19 Heat of formation + Delta-G solvation = -50.531097 kcal Electronic energy + Delta-G solvation = -26208.318409 eV Core-core repulsion = 22840.578209 eV Total energy + Delta-G solvation = -3367.740199 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.26510 -39.37058 -37.71998 -36.02000 -35.50111 -33.34810 -32.21165 -31.34552 -29.14721 -28.13470 -27.91786 -27.25418 -26.26112 -22.86567 -22.78638 -21.87269 -20.99830 -19.63912 -19.02046 -18.15663 -17.33014 -16.78511 -16.55484 -16.18620 -15.63948 -15.43444 -15.28519 -14.99386 -14.73930 -14.40863 -14.31254 -13.96704 -13.85689 -13.55185 -13.39488 -13.15084 -13.03928 -12.94041 -12.83742 -12.78054 -12.62926 -12.60231 -12.48820 -12.34018 -12.14206 -11.95226 -11.83907 -11.63230 -11.35065 -11.31814 -11.15602 -11.02143 -10.54085 -9.47659 -9.22370 -9.14950 -8.59526 -6.28829 0.99685 1.13512 1.33773 1.45129 1.52289 1.91262 2.18948 2.22174 2.78164 3.67269 3.86012 3.95623 4.01059 4.11002 4.19180 4.28066 4.33185 4.39892 4.42970 4.59047 4.60230 4.69491 4.73332 4.77906 4.78691 4.82865 4.85257 4.90607 4.99867 5.02090 5.05720 5.09359 5.15113 5.19666 5.21518 5.29739 5.36786 5.43485 5.44366 5.54807 5.55001 5.77300 5.85076 6.04198 6.16847 6.21427 6.42512 6.59389 6.74284 6.99839 7.11566 7.49838 8.36926 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.012837 B = 0.005448 C = 0.004519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.604922 B = 5138.141751 C = 6195.060600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.108 4.108 3 C -0.132 4.132 4 C 0.118 3.882 5 N -0.609 5.609 6 C 0.518 3.482 7 O -0.565 6.565 8 C -0.066 4.066 9 C -0.185 4.185 10 C -0.092 4.092 11 C -0.241 4.241 12 C -0.118 4.118 13 C -0.193 4.193 14 C 0.097 3.903 15 C -0.480 4.480 16 H 0.067 0.933 17 C 0.037 3.963 18 N -0.826 5.826 19 Si 0.969 3.031 20 H -0.254 1.254 21 H -0.267 1.267 22 H -0.270 1.270 23 C 0.118 3.882 24 C -0.160 4.160 25 C -0.156 4.156 26 H 0.044 0.956 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.030 0.970 31 H 0.030 0.970 32 H 0.058 0.942 33 H 0.098 0.902 34 H 0.047 0.953 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.286 0.714 42 H 0.090 0.910 43 H 0.068 0.932 44 H 0.090 0.910 45 H 0.039 0.961 46 H 0.051 0.949 47 H 0.087 0.913 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.795 -9.574 -12.337 18.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.127 4.127 3 C -0.189 4.189 4 C -0.004 4.004 5 N -0.343 5.343 6 C 0.307 3.693 7 O -0.443 6.443 8 C -0.106 4.106 9 C -0.187 4.187 10 C -0.110 4.110 11 C -0.260 4.260 12 C -0.136 4.136 13 C -0.212 4.212 14 C 0.095 3.905 15 C -0.510 4.510 16 H 0.085 0.915 17 C -0.177 4.177 18 N -0.452 5.452 19 Si 0.790 3.210 20 H -0.178 1.178 21 H -0.192 1.192 22 H -0.194 1.194 23 C 0.015 3.985 24 C -0.217 4.217 25 C -0.213 4.213 26 H 0.063 0.937 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.110 0.890 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.116 0.884 34 H 0.065 0.935 35 H 0.108 0.892 36 H 0.120 0.880 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.123 0.877 40 H 0.115 0.885 41 H 0.096 0.904 42 H 0.108 0.892 43 H 0.087 0.913 44 H 0.108 0.892 45 H 0.058 0.942 46 H 0.070 0.930 47 H 0.106 0.894 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.872 -9.066 -11.875 17.907 hybrid contribution 0.094 0.127 1.148 1.159 sum -9.778 -8.939 -10.727 17.047 Atomic orbital electron populations 1.21750 0.93385 1.02698 1.01915 1.21651 0.96803 0.95604 0.98655 1.21707 0.99881 0.97024 1.00302 1.21518 0.79664 1.01265 0.97974 1.48154 1.06311 1.21213 1.58586 1.20963 0.89954 0.81816 0.76564 1.90655 1.75532 1.33275 1.44857 1.20262 0.90647 0.98277 1.01378 1.19556 1.08985 0.97015 0.93112 1.20689 0.98552 0.93507 0.98249 1.20690 1.10970 0.99869 0.94515 1.20935 1.00437 0.97582 0.94640 1.21294 1.06740 0.94335 0.98862 1.17708 0.89140 0.92167 0.91488 1.19557 1.17605 1.10573 1.03244 0.91478 1.26634 0.93819 0.97372 0.99881 1.69877 1.13233 1.38159 1.23966 0.85410 0.79196 0.78998 0.77398 1.17798 1.19152 1.19443 1.21447 0.98545 0.84732 0.93726 1.22148 1.02585 0.97008 1.00007 1.22226 1.02685 1.02789 0.93642 0.93708 0.91615 0.90843 0.89005 0.95054 0.95132 0.92339 0.88395 0.93460 0.89183 0.87984 0.86974 0.86784 0.87707 0.88544 0.90376 0.89165 0.91312 0.89163 0.94157 0.92992 0.89433 0.91067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.19 71.98 0.66 -1.82 16 2 C -0.11 -2.43 2.88 -10.80 -0.03 -2.46 16 3 C -0.13 -3.88 7.94 71.98 0.57 -3.30 16 4 C 0.12 3.11 4.42 86.38 0.38 3.49 16 5 N -0.61 -17.90 2.29 -797.84 -1.82 -19.73 16 6 C 0.52 20.59 5.87 87.65 0.51 21.10 16 7 O -0.57 -27.77 13.83 -3.05 -0.04 -27.82 16 8 C -0.07 -2.65 3.49 29.10 0.10 -2.55 16 9 C -0.18 -9.18 4.43 -19.41 -0.09 -9.26 16 10 C -0.09 -4.28 9.66 22.22 0.21 -4.06 16 11 C -0.24 -11.31 10.05 22.46 0.23 -11.08 16 12 C -0.12 -5.95 10.02 22.22 0.22 -5.73 16 13 C -0.19 -10.93 8.69 22.73 0.20 -10.73 16 14 C 0.10 5.47 5.56 -21.29 -0.12 5.35 16 15 C -0.48 -26.58 8.14 23.46 0.19 -26.39 16 16 H 0.07 3.66 6.67 -2.91 -0.02 3.64 16 17 C 0.04 1.95 5.16 85.26 0.44 2.39 16 18 N -0.83 -44.55 10.95 21.83 0.24 -44.31 16 19 Si 0.97 39.97 29.59 68.60 2.03 42.00 16 20 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 21 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 22 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 23 C 0.12 2.55 3.17 44.99 0.14 2.69 16 24 C -0.16 -2.94 9.17 71.98 0.66 -2.28 16 25 C -0.16 -2.41 8.07 71.98 0.58 -1.83 16 26 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.07 1.00 8.14 -2.38 -0.02 0.99 16 29 H 0.09 1.76 5.35 -2.39 -0.01 1.75 16 30 H 0.03 1.07 8.00 -2.39 -0.02 1.05 16 31 H 0.03 1.05 6.06 -2.39 -0.01 1.03 16 32 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.10 1.97 6.43 -2.39 -0.02 1.96 16 34 H 0.05 1.57 7.42 -2.39 -0.02 1.55 16 35 H 0.09 3.65 6.72 -2.39 -0.02 3.63 16 36 H 0.10 3.37 7.70 -2.39 -0.02 3.35 16 37 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 38 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 39 H 0.10 4.71 8.06 -2.91 -0.02 4.69 16 40 H 0.10 5.71 6.20 -2.91 -0.02 5.69 16 41 H 0.29 13.98 8.30 -92.71 -0.77 13.21 16 42 H 0.09 2.05 5.77 -2.38 -0.01 2.03 16 43 H 0.07 1.10 6.66 -2.38 -0.02 1.08 16 44 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.05 0.91 8.10 -2.39 -0.02 0.89 16 47 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.07 0.98 6.26 -2.38 -0.01 0.96 16 Total: -1.00 -69.14 370.69 6.20 -62.94 By element: Atomic # 1 Polarization: 32.48 SS G_CDS: 0.93 Total: 33.41 kcal Atomic # 6 Polarization: -51.37 SS G_CDS: 4.87 Total: -46.50 kcal Atomic # 7 Polarization: -62.45 SS G_CDS: -1.59 Total: -64.04 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -0.04 Total: -27.82 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 2.03 Total: 42.00 kcal Total: -69.14 6.20 -62.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776806439.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.406 kcal (2) G-P(sol) polarization free energy of solvation -69.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds